11-1466665-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466665
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466665
    reference: chr 11
allele count: 5
allele frequency: 4.465641355411464e-5
allele num: 111966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.954G>A
  hgvsp: ENST00000526678.1:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.774G>A
  hgvsp: ENST00000528710.1:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.954G>A
  hgvsp: ENST00000528841.1:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.39G>A
  hgvsp: ENST00000544817.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.954G>A
  hgvsp: ENST00000531197.1:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.954G>A
  hgvsp: ENST00000529433.1:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.954G>A
  hgvsp: ENST00000308230.5:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.954G>A
  hgvsp: ENST00000308219.9:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*127G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1092G>A
  hgvsp: ENST00000382179.1:c.1092G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.554G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu364Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

11-1466668-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466668
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466668
    reference: chr 11
allele count: 1
allele frequency: 8.950147677436678e-6
allele num: 111730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.957G>A
  hgvsp: ENST00000308219.9:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.957G>A
  hgvsp: ENST00000531197.1:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.557G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.777G>A
  hgvsp: ENST00000528710.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1095G>A
  hgvsp: ENST00000382179.1:c.1095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.957G>A
  hgvsp: ENST00000529433.1:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.42G>A
  hgvsp: ENST00000544817.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*130G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.957G>A
  hgvsp: ENST00000526678.1:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.957G>A
  hgvsp: ENST00000308230.5:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.957G>A
  hgvsp: ENST00000528841.1:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu365Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-1466671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466671
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466671
    reference: chr 11
allele count: 1
allele frequency: 8.958967926894822e-6
allele num: 111620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.960G>A
  hgvsp: ENST00000529433.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.960G>A
  hgvsp: ENST00000526678.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.960G>A
  hgvsp: ENST00000528841.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1098G>A
  hgvsp: ENST00000382179.1:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.960G>A
  hgvsp: ENST00000308230.5:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.780G>A
  hgvsp: ENST00000528710.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.45G>A
  hgvsp: ENST00000544817.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.960G>A
  hgvsp: ENST00000308219.9:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.960G>A
  hgvsp: ENST00000531197.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.560G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30945
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln366Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

11-1466682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466682
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466682
    reference: chr 11
allele count: 1
allele frequency: 9.082817126559974e-6
allele num: 110098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.971C>T
  hgvsp: ENSP00000431152.1:p.Ser324Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.971C>T
  hgvsp: ENSP00000310805.5:p.Ser324Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.791C>T
  hgvsp: ENSP00000433235.1:p.Ser264Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.56C>T
  hgvsp: ENSP00000445168.1:p.Ser19Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.971C>T
  hgvsp: ENSP00000310697.9:p.Ser324Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.571C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.971C>T
  hgvsp: ENSP00000432000.1:p.Ser324Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1109C>T
  hgvsp: ENSP00000371614.1:p.Ser370Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.971C>T
  hgvsp: ENSP00000433684.1:p.Ser324Phe
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*144C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.971C>T
  hgvsp: ENSP00000433370.1:p.Ser324Phe
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser370Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

11-1466683-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466683
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466683
    reference: chr 11
allele count: 1
allele frequency: 9.101996978137003e-6
allele num: 109866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.972C>G
  hgvsp: ENST00000308219.9:c.972C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.972C>G
  hgvsp: ENST00000526678.1:c.972C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.972C>G
  hgvsp: ENST00000531197.1:c.972C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.972C>G
  hgvsp: ENST00000529433.1:c.972C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.972C>G
  hgvsp: ENST00000308230.5:c.972C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.792C>G
  hgvsp: ENST00000528710.1:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*145C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.972C>G
  hgvsp: ENST00000528841.1:c.972C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.57C>G
  hgvsp: ENST00000544817.1:c.57C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.572C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1110C>G
  hgvsp: ENST00000382179.1:c.1110C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser370Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

11-1466683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466683
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466683
    reference: chr 11
allele count: 3
allele frequency: 2.730599093441101e-5
allele num: 109866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.972C>T
  hgvsp: ENST00000528841.1:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1110C>T
  hgvsp: ENST00000382179.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.572C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.792C>T
  hgvsp: ENST00000528710.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.972C>T
  hgvsp: ENST00000526678.1:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.972C>T
  hgvsp: ENST00000531197.1:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.972C>T
  hgvsp: ENST00000308219.9:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.972C>T
  hgvsp: ENST00000529433.1:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.972C>T
  hgvsp: ENST00000308230.5:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*145C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.57C>T
  hgvsp: ENST00000544817.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser370Ser
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-1466684-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466684
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466684
    reference: chr 11
allele count: 2
allele frequency: 1.820631394967775e-5
allele num: 109852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.973G>A
  hgvsp: ENSP00000433684.1:p.Glu325Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.58G>A
  hgvsp: ENSP00000445168.1:p.Glu20Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.793G>A
  hgvsp: ENSP00000433235.1:p.Glu265Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.973G>A
  hgvsp: ENSP00000432000.1:p.Glu325Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*146G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.973G>A
  hgvsp: ENSP00000431152.1:p.Glu325Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.973G>A
  hgvsp: ENSP00000310805.5:p.Glu325Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.973G>A
  hgvsp: ENSP00000433370.1:p.Glu325Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.573G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.973G>A
  hgvsp: ENSP00000310697.9:p.Glu325Lys
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1111G>A
  hgvsp: ENSP00000371614.1:p.Glu371Lys
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu371Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

11-1466696-T-TGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466696
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466698
    reference: chr 11
allele count: 4
allele frequency: 3.696584356055005e-5
allele num: 108208
alternate allele: TGG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+11_977+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+11_977+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+11_977+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+11_*150+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+11_577+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+11_797+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+11_977+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+11_62+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+11_977+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+11_977+12dupGG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+11_1115+12dupGG
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24710
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

11-1466701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466701
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466701
    reference: chr 11
allele count: 6
allele frequency: 5.591486030604067e-5
allele num: 107306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+13C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+13C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23333
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4923
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

11-1466703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466703
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466703
    reference: chr 11
allele count: 1
allele frequency: 9.35576221394757e-6
allele num: 106886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+15G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+15G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

11-1466704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466704
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466704
    reference: chr 11
allele count: 1
allele frequency: 9.35401193571923e-6
allele num: 106906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+16C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+16C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

11-1466706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466706
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466706
    reference: chr 11
allele count: 2
allele frequency: 1.87522268269357e-5
allele num: 106654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+18C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+18C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22179
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

11-1466708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466708
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466708
    reference: chr 11
allele count: 2
allele frequency: 1.882317509317472e-5
allele num: 106252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+20C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+20C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10041
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

11-1466708-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466708
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466707
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 106252
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+23delG
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+23delG
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 21579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: CG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-1466709-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466709
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466709
    reference: chr 11
allele count: 1
allele frequency: 9.424537726424519e-6
allele num: 106106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+21G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+21G>C
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4013
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

11-1466713-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466713
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466713
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 105200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+25G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+25G>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3671
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-1466718-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466718
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466718
    reference: chr 11
allele count: 2
allele frequency: 1.912484700122399e-5
allele num: 104576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+30A>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+30A>G
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18670
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11666
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5015
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

11-1466720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466720
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466720
    reference: chr 11
allele count: 16147
allele frequency: 1.559313195302843e-1
allele num: 103552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+32G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+32G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.75e1
  variant carriers: 960
genotype depth: GenotypeDepth
  all individuals: 9382
  bin: 1.75e1
  variant carriers: 2913
genotype depth: GenotypeDepth
  all individuals: 15014
  bin: 2.25e1
  variant carriers: 2872
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 9073
  bin: 2.75e1
  variant carriers: 2333
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 7.5e0
  variant carriers: 804
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 1596
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 2.5e0
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 11745
  bin: 1.25e1
  variant carriers: 2000
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 962
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 6.75e1
  variant carriers: 138
num of homozygotes: 1266
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-1466737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466737
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466737
    reference: chr 11
allele count: 3
allele frequency: 3.05698214722426e-5
allele num: 98136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+49C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+49C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13664
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-1466738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466738
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466738
    reference: chr 11
allele count: 2
allele frequency: 2.049684348610314e-5
allele num: 97576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.977+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.977+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.797+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.62+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.977+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.977+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.577+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.977+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1115+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*150+50G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.977+50G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12408
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12836
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7978
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

11-1466752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466752
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466752
    reference: chr 11
allele count: 1
allele frequency: 1.424704373842428e-5
allele num: 70190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-49G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-49G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

11-1466754-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466754
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466754
    reference: chr 11
allele count: 1
allele frequency: 1.467093101728236e-5
allele num: 68162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-47C>G
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-47C>G
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

11-1466754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466754
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466754
    reference: chr 11
allele count: 3
allele frequency: 4.401279305184707e-5
allele num: 68162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-47C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-47C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16865
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-1466757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466757
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466757
    reference: chr 11
allele count: 5
allele frequency: 7.541478129713424e-5
allele num: 66300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-44C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-44C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16758
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-1466758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466758
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466758
    reference: chr 11
allele count: 2
allele frequency: 3.0351777096549e-5
allele num: 65894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-43G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-43G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-1466763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466763
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466763
    reference: chr 11
allele count: 4
allele frequency: 6.412928463782986e-5
allele num: 62374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-38C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-38C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20535
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16885
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

11-1466764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466764
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466764
    reference: chr 11
allele count: 9
allele frequency: 1.446108361719905e-4
allele num: 62236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-37G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-37G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16851
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-1466764-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466764
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466764
    reference: chr 11
allele count: 1
allele frequency: 1.606787068577672e-5
allele num: 62236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-37G>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-37G>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16851
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

11-1466774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466774
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466774
    reference: chr 11
allele count: 7
allele frequency: 1.280831442582156e-4
allele num: 54652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-27G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-27G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15500
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21786
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

11-1466775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466775
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466775
    reference: chr 11
allele count: 133
allele frequency: 2.449535877412701e-3
allele num: 54296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-26C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-26C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15407
  bin: 1.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21867
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 2.75e1
  variant carriers: 4
num of homozygotes: 3
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

11-1466776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466776
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466776
    reference: chr 11
allele count: 12
allele frequency: 2.207343094695019e-4
allele num: 54364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-25G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-25G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21960
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15329
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

11-1466780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466780
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466780
    reference: chr 11
allele count: 12
allele frequency: 2.432399562168079e-4
allele num: 49334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-21C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-21C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13863
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22763
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

11-1466781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466781
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466781
    reference: chr 11
allele count: 215
allele frequency: 4.365836819234049e-3
allele num: 49246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-20G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-20G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22900
  bin: 7.5e0
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13781
  bin: 1.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-1466782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466782
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466782
    reference: chr 11
allele count: 58
allele frequency: 1.187502559272757e-3
allele num: 48842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-19C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-19C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23056
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

11-1466783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466783
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466783
    reference: chr 11
allele count: 1
allele frequency: 2.052039727489124e-5
allele num: 48732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-18G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-18G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13523
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

11-1466789-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466789
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466789
    reference: chr 11
allele count: 3
allele frequency: 6.585012511523772e-5
allele num: 45558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-12C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-12C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

11-1466790-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466790
    reference: chr 11
allele count: 1
allele frequency: 2.26510827217541e-5
allele num: 44148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-11G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-11G>C
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

11-1466793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466793
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466793
    reference: chr 11
allele count: 4
allele frequency: 9.205136466148111e-5
allele num: 43454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-8C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-8C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23631
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1116-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

11-1466794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466794
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466794
    reference: chr 11
allele count: 22
allele frequency: 5.20119154569956e-4
allele num: 42298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.978-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.578-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.978-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*151-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1116-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.978-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.63-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.978-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.978-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.798-7G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.978-7G>A
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11225
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23654
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13098
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1116-7G>A
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

11-1466807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466807
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466807
    reference: chr 11
allele count: 1
allele frequency: 2.593630044610437e-5
allele num: 38556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.984C>T
  hgvsp: ENST00000308230.5:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.984C>T
  hgvsp: ENST00000526678.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.984C>T
  hgvsp: ENST00000308219.9:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.804C>T
  hgvsp: ENST00000528710.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*157C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1122C>T
  hgvsp: ENST00000382179.1:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.984C>T
  hgvsp: ENST00000531197.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.984C>T
  hgvsp: ENST00000529433.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174672
  ensembl transcript: ENST00000531078
  gene symbol: BRSK2
  hgvsc: ENST00000531078.1:n.584C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.984C>T
  hgvsp: ENST00000528841.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.69C>T
  hgvsp: ENST00000544817.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24058
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9148
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn374Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-1466825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466825
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466825
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 35878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.87C>T
  hgvsp: ENST00000544817.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1002C>T
  hgvsp: ENST00000308230.5:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1002C>T
  hgvsp: ENST00000529433.1:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1140C>T
  hgvsp: ENST00000382179.1:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1002C>T
  hgvsp: ENST00000526678.1:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.822C>T
  hgvsp: ENST00000528710.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1002C>T
  hgvsp: ENST00000308219.9:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1002C>T
  hgvsp: ENST00000528841.1:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1002C>T
  hgvsp: ENST00000531197.1:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*175C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24413
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr380Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

11-1466828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466828
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466828
    reference: chr 11
allele count: 8
allele frequency: 2.224570379845392e-4
allele num: 35962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.825C>T
  hgvsp: ENST00000528710.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1005C>T
  hgvsp: ENST00000528841.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*178C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1005C>T
  hgvsp: ENST00000529433.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.90C>T
  hgvsp: ENST00000544817.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1005C>T
  hgvsp: ENST00000308230.5:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1005C>T
  hgvsp: ENST00000308219.9:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1005C>T
  hgvsp: ENST00000526678.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1143C>T
  hgvsp: ENST00000382179.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1005C>T
  hgvsp: ENST00000531197.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24660
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe381Phe
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

11-1466834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466834
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466834
    reference: chr 11
allele count: 14
allele frequency: 3.912363067292645e-4
allele num: 35784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1011C>T
  hgvsp: ENST00000529433.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1011C>T
  hgvsp: ENST00000531197.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.96C>T
  hgvsp: ENST00000544817.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1011C>T
  hgvsp: ENST00000308219.9:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1011C>T
  hgvsp: ENST00000308230.5:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1011C>T
  hgvsp: ENST00000526678.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.831C>T
  hgvsp: ENST00000528710.1:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1011C>T
  hgvsp: ENST00000528841.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*184C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1149C>T
  hgvsp: ENST00000382179.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25223
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 2
hgvs: p.Leu383Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

11-1466835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466835
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466835
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 35754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1012C>T
  hgvsp: ENST00000531197.1:c.1012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1012C>T
  hgvsp: ENST00000526678.1:c.1012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.97C>T
  hgvsp: ENST00000544817.1:c.97C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.832C>T
  hgvsp: ENST00000528710.1:c.832C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1012C>T
  hgvsp: ENST00000528841.1:c.1012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*185C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1012C>T
  hgvsp: ENST00000529433.1:c.1012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1012C>T
  hgvsp: ENST00000308219.9:c.1012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1012C>T
  hgvsp: ENST00000308230.5:c.1012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1150C>T
  hgvsp: ENST00000382179.1:c.1150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25359
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu384Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-1466843-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466843
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466843
    reference: chr 11
allele count: 1
allele frequency: 2.748007694421545e-5
allele num: 36390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1020G>C
  hgvsp: ENST00000308230.5:c.1020G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1020G>C
  hgvsp: ENST00000531197.1:c.1020G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1020G>C
  hgvsp: ENST00000308219.9:c.1020G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.840G>C
  hgvsp: ENST00000528710.1:c.840G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1020G>C
  hgvsp: ENST00000526678.1:c.1020G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1158G>C
  hgvsp: ENST00000382179.1:c.1158G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.105G>C
  hgvsp: ENST00000544817.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1020G>C
  hgvsp: ENST00000529433.1:c.1020G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1020G>C
  hgvsp: ENST00000528841.1:c.1020G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*193G>C
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7238
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg386Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

11-1466858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466858
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466858
    reference: chr 11
allele count: 4
allele frequency: 1.02997219075085e-4
allele num: 38836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1035G>A
  hgvsp: ENST00000308219.9:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1035G>A
  hgvsp: ENST00000526678.1:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1035G>A
  hgvsp: ENST00000529433.1:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1035G>A
  hgvsp: ENST00000528841.1:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1173G>A
  hgvsp: ENST00000382179.1:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.120G>A
  hgvsp: ENST00000544817.1:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1035G>A
  hgvsp: ENST00000531197.1:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1035G>A
  hgvsp: ENST00000308230.5:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.855G>A
  hgvsp: ENST00000528710.1:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28241
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro391Pro
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

11-1466858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466858
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466858
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 38836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1035G>C
  hgvsp: ENST00000531197.1:c.1035G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1035G>C
  hgvsp: ENST00000529433.1:c.1035G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1173G>C
  hgvsp: ENST00000382179.1:c.1173G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1035G>C
  hgvsp: ENST00000308230.5:c.1035G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1035G>C
  hgvsp: ENST00000308219.9:c.1035G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1035G>C
  hgvsp: ENST00000526678.1:c.1035G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.855G>C
  hgvsp: ENST00000528710.1:c.855G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*208G>C
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1035G>C
  hgvsp: ENST00000528841.1:c.1035G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.120G>C
  hgvsp: ENST00000544817.1:c.120G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28241
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro391Pro
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

11-1466861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466861
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466861
    reference: chr 11
allele count: 1
allele frequency: 2.518637920612533e-5
allele num: 39704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1038C>T
  hgvsp: ENST00000308230.5:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*211C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.123C>T
  hgvsp: ENST00000544817.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1038C>T
  hgvsp: ENST00000531197.1:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1038C>T
  hgvsp: ENST00000308219.9:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1176C>T
  hgvsp: ENST00000382179.1:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1038C>T
  hgvsp: ENST00000529433.1:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.858C>T
  hgvsp: ENST00000528710.1:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1038C>T
  hgvsp: ENST00000528841.1:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1038C>T
  hgvsp: ENST00000526678.1:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser392Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-1466877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466877
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466877
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 44418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1054C>T
  hgvsp: ENST00000526678.1:c.1054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.874C>T
  hgvsp: ENST00000528710.1:c.874C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1192C>T
  hgvsp: ENST00000382179.1:c.1192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1054C>T
  hgvsp: ENST00000528841.1:c.1054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.139C>T
  hgvsp: ENST00000544817.1:c.139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1054C>T
  hgvsp: ENST00000308230.5:c.1054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1054C>T
  hgvsp: ENST00000529433.1:c.1054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1054C>T
  hgvsp: ENST00000308219.9:c.1054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1054C>T
  hgvsp: ENST00000531197.1:c.1054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*227C>T
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30110
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu398Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

11-1466879-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466879
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466880
    reference: chr 11
allele count: 4
allele frequency: 9.134922809902256e-5
allele num: 43788
alternate allele: GC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1201dupC
  hgvsp: ENSP00000371614.1:p.Arg401ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1063dupC
  hgvsp: ENSP00000433684.1:p.Arg355ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1063dupC
  hgvsp: ENSP00000431152.1:p.Arg355ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1063dupC
  hgvsp: ENSP00000310697.9:p.Arg355ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1063dupC
  hgvsp: ENSP00000433370.1:p.Arg355ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.148dupC
  hgvsp: ENSP00000445168.1:p.Arg50ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.883dupC
  hgvsp: ENSP00000433235.1:p.Arg295ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1063dupC
  hgvsp: ENSP00000432000.1:p.Arg355ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1063dupC
  hgvsp: ENSP00000310805.5:p.Arg355ProfsTer48
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*236dupC
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29148
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg401ProfsTer48
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-1466883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466883
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466883
    reference: chr 11
allele count: 1
allele frequency: 2.018407879864363e-5
allele num: 49544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*233C>T
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1060C>T
  hgvsp: ENSP00000432000.1:p.Pro354Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.880C>T
  hgvsp: ENSP00000433235.1:p.Pro294Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.145C>T
  hgvsp: ENSP00000445168.1:p.Pro49Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1060C>T
  hgvsp: ENSP00000433370.1:p.Pro354Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1198C>T
  hgvsp: ENSP00000371614.1:p.Pro400Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1060C>T
  hgvsp: ENSP00000433684.1:p.Pro354Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1060C>T
  hgvsp: ENSP00000310697.9:p.Pro354Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1060C>T
  hgvsp: ENSP00000310805.5:p.Pro354Ser
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1060C>T
  hgvsp: ENSP00000431152.1:p.Pro354Ser
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9778
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro400Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/11-1466884-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466884
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466884
    reference: chr 11
allele count: 1
allele frequency: 2.000640204865557e-5
allele num: 49984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1061C>A
  hgvsp: ENSP00000433684.1:p.Pro354His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1061C>A
  hgvsp: ENSP00000310697.9:p.Pro354His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.146C>A
  hgvsp: ENSP00000445168.1:p.Pro49His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1199C>A
  hgvsp: ENSP00000371614.1:p.Pro400His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1061C>A
  hgvsp: ENSP00000433370.1:p.Pro354His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*234C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.881C>A
  hgvsp: ENSP00000433235.1:p.Pro294His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1061C>A
  hgvsp: ENSP00000310805.5:p.Pro354His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1061C>A
  hgvsp: ENSP00000431152.1:p.Pro354His
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1061C>A
  hgvsp: ENSP00000432000.1:p.Pro354His
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro400His
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-1466885-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466885
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466885
    reference: chr 11
allele count: 2
allele frequency: 3.958984916267469e-5
allele num: 50518
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1200C>A
  hgvsp: ENST00000382179.1:c.1200C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.882C>A
  hgvsp: ENST00000528710.1:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1062C>A
  hgvsp: ENST00000531197.1:c.1062C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1062C>A
  hgvsp: ENST00000526678.1:c.1062C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1062C>A
  hgvsp: ENST00000308219.9:c.1062C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1062C>A
  hgvsp: ENST00000528841.1:c.1062C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1062C>A
  hgvsp: ENST00000308230.5:c.1062C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1062C>A
  hgvsp: ENST00000529433.1:c.1062C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*235C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.147C>A
  hgvsp: ENST00000544817.1:c.147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28770
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9815
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Pro400Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-1466886-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1466886
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1466886
    reference: chr 11
allele count: 2
allele frequency: 3.943062182090611e-5
allele num: 50722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433235
  ensembl transcript: ENST00000528710
  gene symbol: BRSK2
  hgvsc: ENST00000528710.1:c.883C>A
  hgvsp: ENST00000528710.1:c.883C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000431152
  ensembl transcript: ENST00000531197
  gene symbol: BRSK2
  hgvsc: ENST00000531197.1:c.1063C>A
  hgvsp: ENST00000531197.1:c.1063C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432252
  ensembl transcript: ENST00000529951
  gene symbol: BRSK2
  hgvsc: ENST00000529951.1:c.*236C>A
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433684
  ensembl transcript: ENST00000529433
  gene symbol: BRSK2
  hgvsc: ENST00000529433.1:c.1063C>A
  hgvsp: ENST00000529433.1:c.1063C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000371614
  ensembl transcript: ENST00000382179
  gene symbol: BRSK2
  hgvsc: ENST00000382179.1:c.1201C>A
  hgvsp: ENST00000382179.1:c.1201C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000432000
  ensembl transcript: ENST00000528841
  gene symbol: BRSK2
  hgvsc: ENST00000528841.1:c.1063C>A
  hgvsp: ENST00000528841.1:c.1063C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000445168
  ensembl transcript: ENST00000544817
  gene symbol: BRSK2
  hgvsc: ENST00000544817.1:c.148C>A
  hgvsp: ENST00000544817.1:c.148C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310805
  ensembl transcript: ENST00000308230
  gene symbol: BRSK2
  hgvsc: ENST00000308230.5:c.1063C>A
  hgvsp: ENST00000308230.5:c.1063C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000433370
  ensembl transcript: ENST00000526678
  gene symbol: BRSK2
  hgvsc: ENST00000526678.1:c.1063C>A
  hgvsp: ENST00000526678.1:c.1063C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174672
  ensembl protein: ENSP00000310697
  ensembl transcript: ENST00000308219
  gene symbol: BRSK2
  hgvsc: ENST00000308219.9:c.1063C>A
  hgvsp: ENST00000308219.9:c.1063C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11405
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg401Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/12-49441819-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441819
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441819
    reference: chr 12
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4165G>T
  hgvsp: ENSP00000301067.7:p.Gly1389Trp
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39989
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly1389Trp
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.504573904670197e-5
  allele num: 66464
  num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-49441821-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441821
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441821
    reference: chr 12
allele count: 33
allele frequency: 2.744191461406689e-4
allele num: 120254
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4163G>T
  hgvsp: ENSP00000301067.7:p.Arg1388Leu
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31819
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39907
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1388Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 1.118568232662192e-3
  allele num: 894
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

12-49441821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441821
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441821
    reference: chr 12
allele count: 3
allele frequency: 2.494719510369718e-5
allele num: 120254
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4163G>A
  hgvsp: ENSP00000301067.7:p.Arg1388Gln
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1388Gln
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8596
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16376
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

12-49441823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441823
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441823
    reference: chr 12
allele count: 1
allele frequency: 8.321959988016378e-6
allele num: 120164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4161C>T
  hgvsp: ENST00000301067.7:c.4161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16742
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly1387Gly
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 892
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8594
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-49441841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441841
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441841
    reference: chr 12
allele count: 60
allele frequency: 5.010522096402445e-4
allele num: 119748
alternate allele: T
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: synonymous_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4143G>A
  hgvsp: ENST00000301067.7:c.4143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16465
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7540
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 9.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val1381Val
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66260
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8588
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

12-49441842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441842
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441842
    reference: chr 12
allele count: 1
allele frequency: 8.351846593281774e-6
allele num: 119734
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4142T>C
  hgvsp: ENSP00000301067.7:p.Val1381Ala
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val1381Ala
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 886
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16094
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

12-49441864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441864
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441864
    reference: chr 12
allele count: 1
allele frequency: 8.46510682964819e-6
allele num: 118132
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-12G>A
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30426
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6830
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11508
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8568
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.522301720200944e-5
  allele num: 65690
  num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/12-49441864-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441864
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441864
    reference: chr 12
allele count: 1
allele frequency: 8.46510682964819e-6
allele num: 118132
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-12G>T
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11508
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6602
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15224
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

12-49441872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441872
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441872
    reference: chr 12
allele count: 2
allele frequency: 1.699899705917351e-5
allele num: 117654
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-20G>A
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 2
  allele frequency: 2.337540906965872e-4
  allele num: 8556
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15012
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9646
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

12-49441872-CCCAAATGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441872
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441864
    reference: chr 12
allele count: 1
allele frequency: 8.499498529586754e-6
allele num: 117654
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6596
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 862
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8556
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: CCCAAATGT
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

12-49441873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441873
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441873
    reference: chr 12
allele count: 1
allele frequency: 8.512521919743944e-6
allele num: 117474
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-21G>A
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65414
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 860
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.718395815170009e-5
  allele num: 11470
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/12-49441874-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441874
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441874
    reference: chr 12
allele count: 2
allele frequency: 1.704100064755802e-5
allele num: 117364
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-22G>T
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11470
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14874
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 858
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-49441876-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441876
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441876
    reference: chr 12
allele count: 3
allele frequency: 2.555061576984005e-5
allele num: 117414
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-24T>C
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6586
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11476
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 4.587997797761057e-5
  allele num: 65388
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9638
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-49441885-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441885
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441885
    reference: chr 12
allele count: 3
allele frequency: 2.579180852161354e-5
allele num: 116316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-33G>T
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6145
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8522
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11426
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9584
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

12-49441885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441885
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441885
    reference: chr 12
allele count: 1
allele frequency: 8.597269507204511e-6
allele num: 116316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-33G>A
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11426
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8522
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6584
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

12-49441897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49441897
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 49441897
    reference: chr 12
allele count: 1
allele frequency: 8.718699867475763e-6
allele num: 114696
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167548
  ensembl protein: ENSP00000301067
  ensembl transcript: ENST00000301067
  gene symbol: KMT2D
  hgvsc: ENST00000301067.7:c.4132-45T>C
  variant of: http://identifiers.org/hgnc/7133
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11300
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.181474480151229e-4
  allele num: 8464
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64376
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.037293039704228e-5
allele num: 62210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.34143e6

QD
type: SiteQuality
SIO_000300: 1.247e1

FS
type: SiteQuality
SIO_000300: 1.464e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.535e0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5784
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.61087663906698e-5
allele num: 62078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.335759e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: -1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.118e0

QD
type: SiteQuality
SIO_000300: 7.34e0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.813565469713457e-4
allele num: 5514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62034
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.708e0

FS
type: SiteQuality
SIO_000300: 1.511e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.332201e6

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 6.09e0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 390
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7128
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4971
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633613225732675e-5
allele num: 61214
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.24e-1

QD
type: SiteQuality
SIO_000300: 6.08e0

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 1.251e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.714e0

VQSLOD
type: SiteQuality
SIO_000300: -1.266e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.293906e6

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.43915003219575e-5
allele num: 15530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61058
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 1.291344e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 1.117e1

FS
type: SiteQuality
SIO_000300: 5.101e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.11e-1

GenotypeDepth
all individuals: 27574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1927
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7164
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.179523472517103e-4
allele num: 8478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.317927692881103e-5
allele num: 10732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637787022175636e-5
allele num: 61058
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.291344e6

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.11e-1

QD
type: SiteQuality
SIO_000300: 1.117e1

FS
type: SiteQuality
SIO_000300: 5.101e0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

GenotypeDepth
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 398
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5330
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.445790898543251e-5
allele num: 15514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637465203864418e-5
allele num: 61070
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

FS
type: SiteQuality
SIO_000300: 1.121e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.291186e6

GenotypeQuality
all individuals: 697
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1388
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.776435045317221e-4
allele num: 10592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 1.734e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.92e-1

DP
type: SiteQuality
SIO_000300: 1.240276e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.085e1

QD
type: SiteQuality
SIO_000300: 1.527e1

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8542
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2235
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29342
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.534706331045004e-5
allele num: 10488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.707807888382076e-5
allele num: 59632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.228199459592238e-4
allele num: 8142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

QD
type: SiteQuality
SIO_000300: 1.025e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.278e0

DP
type: SiteQuality
SIO_000300: 1.216811e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

FS
type: SiteQuality
SIO_000300: 4.972e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 483
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6832749798007e-5
allele num: 59408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15346
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.122e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

DP
type: SiteQuality
SIO_000300: 1.205364e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4328
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2687
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683048337148243e-5
allele num: 59416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15362
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.135999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 1.204717e6

QD
type: SiteQuality
SIO_000300: 2.581e1

VQSLOD
type: SiteQuality
SIO_000300: -1.829e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.095e0

GenotypeQuality
all individuals: 8764
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 421
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2778
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.687763713080169e-5
allele num: 59250
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.512960791976033e-5
allele num: 15354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.022e0

VQSLOD
type: SiteQuality
SIO_000300: -4.004e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.639e1

FS
type: SiteQuality
SIO_000300: 3.182e0

DP
type: SiteQuality
SIO_000300: 1.197821e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.73e-1

GenotypeQuality
all individuals: 2815
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5052
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.58732212160414e-4
allele num: 7730
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 1.188803e6

FS
type: SiteQuality
SIO_000300: 2.139e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 409
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 8880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

FS
type: SiteQuality
SIO_000300: 2.139e0

DP
type: SiteQuality
SIO_000300: 1.188803e6

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

GenotypeQuality
all individuals: 460
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.295672454003628e-4
allele num: 7718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.183176e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.871e0

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.326e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.174e1

GenotypeQuality
all individuals: 196
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4666
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9002
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.105e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

DP
type: SiteQuality
SIO_000300: 1.153404e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.818e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

GenotypeQuality
all individuals: 515
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8906
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4032
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.951219512195122e-4
allele num: 10250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 4.121e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

DP
type: SiteQuality
SIO_000300: 1.137254e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1318
bin: 4.75e1
variant carriers: 140

GenotypeQuality
all individuals: 4044
bin: 3.25e1
variant carriers: 96

GenotypeQuality
all individuals: 1230
bin: 4.25e1
variant carriers: 83

GenotypeQuality
all individuals: 977
bin: 7.75e1
variant carriers: 166

GenotypeQuality
all individuals: 754
bin: 5.25e1
variant carriers: 152

GenotypeQuality
all individuals: 2933
bin: 2.75e1
variant carriers: 94

GenotypeQuality
all individuals: 1809
bin: 7.5e0
variant carriers: 61

GenotypeQuality
all individuals: 819
bin: 2.5e0
variant carriers: 27

GenotypeQuality
all individuals: 653
bin: 1.75e1
variant carriers: 85

GenotypeQuality
all individuals: 3104
bin: 3.75e1
variant carriers: 111

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 175

GenotypeQuality
all individuals: 579
bin: 1.25e1
variant carriers: 73

GenotypeQuality
all individuals: 7566
bin: 2.25e1
variant carriers: 84

GenotypeQuality
all individuals: 872
bin: 7.25e1
variant carriers: 110

GenotypeQuality
all individuals: 641
bin: 5.75e1
variant carriers: 113

GenotypeQuality
all individuals: 657
bin: 8.25e1
variant carriers: 184

GenotypeQuality
all individuals: 14450
bin: 6.25e1
variant carriers: 157

GenotypeQuality
all individuals: 14018
bin: 9.75e1
variant carriers: 13660

GenotypeQuality
all individuals: 361
bin: 8.75e1
variant carriers: 169

Other
type: Population
allele count: 122
allele frequency: 1.72316384180791e-1
allele num: 708
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 11089
allele frequency: 1.933565823888405e-1
allele num: 57350
num of homozygotes: 973

South Asian
type: Population
allele count: 1812
allele frequency: 1.192890059249506e-1
allele num: 15190
num of homozygotes: 110

European (Finnish)
type: Population
allele count: 960
allele frequency: 1.968826907301066e-1
allele num: 4876
num of homozygotes: 79

Latino
type: Population
allele count: 731
allele frequency: 7.243361078081649e-2
allele num: 10092
num of homozygotes: 24

African
type: Population
allele count: 1020
allele frequency: 1.308698999230177e-1
allele num: 7794
num of homozygotes: 57

East Asian
type: Population
allele count: 413
allele frequency: 5.476001060726598e-2
allele num: 7542
num of homozygotes: 12

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.293148e6

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 1.567e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
all individuals: 1041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8128
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5545
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7264
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.04384133611691e-4
allele num: 9580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.360544217687075e-4
allele num: 7350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.763154335181928e-5
allele num: 14786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 2.841e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 1.12911e6

QD
type: SiteQuality
SIO_000300: 1.365e1

GenotypeQuality
all individuals: 1202
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9892
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4116
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4080
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5541
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4162
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.369112814895947e-4
allele num: 7304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.851989036224905e-5
allele num: 53996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.060999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.355e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.128931e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 7.14e0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5079
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9903
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38754
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.837559720690923e-4
allele num: 5442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.887e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.17576e5

GenotypeQuality
all individuals: 677
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5429
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.667235676944415e-5
allele num: 37492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12304
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.00521e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.742000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.333e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.111e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 677
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5429
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.001707030833244e-5
allele num: 37492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.333e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.00521e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

FS
type: SiteQuality
SIO_000300: 9.742000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.111e1

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5871
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2875
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 607
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.901863826550019e-4
allele num: 5258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.232711306256861e-5
allele num: 36440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.145922746781116e-3
allele num: 466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

FS
type: SiteQuality
SIO_000300: 6.349e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

DP
type: SiteQuality
SIO_000300: 7.88539e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 6069
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2875
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28419
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 154
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2368
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.925298421255295e-4
allele num: 5194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.75709953129308e-5
allele num: 36270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.371e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 7.78687e5

FS
type: SiteQuality
SIO_000300: 4.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

GenotypeQuality
all individuals: 3324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28346
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 363
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.825129609133803e-5
allele num: 34334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.012072434607646e-4
allele num: 4970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11862
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.403846153846154e-3
allele num: 416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.434e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 1.859e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

DP
type: SiteQuality
SIO_000300: 7.47328e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 28908
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7360
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2698
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.765266171916088e-5
allele num: 34226
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.009646302250804e-4
allele num: 4976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4202
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.230834320528008e-4
allele num: 11818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.313e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

FS
type: SiteQuality
SIO_000300: 1.229e0

QD
type: SiteQuality
SIO_000300: 1.385e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

DP
type: SiteQuality
SIO_000300: 7.46324e5

GenotypeQuality
all individuals: 612
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7360
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2698
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28908
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.921755390638696e-5
allele num: 34226
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

DP
type: SiteQuality
SIO_000300: 7.46324e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.313e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

FS
type: SiteQuality
SIO_000300: 1.229e0

QD
type: SiteQuality
SIO_000300: 1.385e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 796
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26838
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9594
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 286
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1483
bin: 6.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.67549091883922e-4
allele num: 29842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.24517287831163e-4
allele num: 4454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1754
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.95159386068477e-4
allele num: 3388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.752e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

DP
type: SiteQuality
SIO_000300: 6.85289e5

GenotypeQuality
all individuals: 998
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6583
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2439
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2495
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1991
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 9671
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 831
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 399
bin: 9.75e1
variant carriers: 127

GenotypeQuality
all individuals: 26843
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 258
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 14

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 7

African
type: Population
allele count: 1
allele frequency: 2.264492753623188e-4
allele num: 4416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

East Asian
type: Population
allele count: 125
allele frequency: 3.553155201819216e-2
allele num: 3518
num of homozygotes: 3

South Asian
type: Population
allele count: 6
allele frequency: 5.310674455655868e-4
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.377237419790612e-5
allele num: 29610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

DP
type: SiteQuality
SIO_000300: 6.83231e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.354e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 2441
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9789
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 281
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 4.041492657955005e-4
allele num: 29692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.82691e5

QD
type: SiteQuality
SIO_000300: 1.367e1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 25376
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2767
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10830
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 973
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6253
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1362
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.155832265152902e-5
allele num: 10922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26858
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 4.089219330855019e-3
allele num: 2690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.56167e5

FS
type: SiteQuality
SIO_000300: 1.434e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

QD
type: SiteQuality
SIO_000300: 1.195e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

GenotypeQuality
all individuals: 25933
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2764
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 333
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1044
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2179
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2708
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 10843
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 204
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 245
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2299
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 13

GenotypeQuality
all individuals: 465
bin: 9.75e1
variant carriers: 208

GenotypeQuality
all individuals: 1360
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 6434
bin: 6.25e1
variant carriers: 9

South Asian
type: Population
allele count: 5
allele frequency: 4.58547322083639e-4
allele num: 10904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.868549172346641e-4
allele num: 4108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.954102920723226e-4
allele num: 1438
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 3.005259203606311e-3
allele num: 2662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 197
allele frequency: 7.35568665521619e-3
allele num: 26782
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.6711140760507e-4
allele num: 2998
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

DP
type: SiteQuality
SIO_000300: 6.55614e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2295
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2630
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 303
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11041
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 325
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 400
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 26309
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 854
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2691
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 3.840245775729647e-4
allele num: 2604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.460629921259842e-4
allele num: 4064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2960
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.835535976505139e-4
allele num: 10896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 2.034664657121326e-3
allele num: 26540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

DP
type: SiteQuality
SIO_000300: 6.5175e5

QD
type: SiteQuality
SIO_000300: 1.379e1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

FS
type: SiteQuality
SIO_000300: 2.487e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2236
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26846
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11097
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2660
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1369
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.776149837625557e-5
allele num: 26482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4046
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 2.456e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.50631e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 752
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 7.524454477050414e-4
allele num: 2658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.060748802079103e-5
allele num: 24626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.564e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.68e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 3.033e0

DP
type: SiteQuality
SIO_000300: 6.31157e5

GenotypeQuality
all individuals: 1357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23884
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12585
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3575
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6271
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1172
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.511128019783147e-5
allele num: 10514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.82e-2

DP
type: SiteQuality
SIO_000300: 6.25386e5

VQSLOD
type: SiteQuality
SIO_000300: -1.292e0

QD
type: SiteQuality
SIO_000300: 1.201e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2758
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24313
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1822
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13018
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 330
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.591803419537761e-5
allele num: 23278
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.560229445506692e-5
allele num: 10460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.705627705627706e-4
allele num: 3696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.82e-2

DP
type: SiteQuality
SIO_000300: 6.20874e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 1.294e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 2.431e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeDepth
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23564
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13272
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 253
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 2901
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.434196523589925e-5
allele num: 22552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 2.025072324011572e-3
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.92e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

DP
type: SiteQuality
SIO_000300: 6.16035e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

FS
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14883
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21961
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1586
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.94811320754717e-4
allele num: 3392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20268
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.463e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.15e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 5.94838e5

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 1494
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4109
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15314
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4804
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6835
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19027
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

QD
type: SiteQuality
SIO_000300: 6.06e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.84555e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 1387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6983
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3946
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15299
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 2.190237797246558e-3
allele num: 3196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.325380764724678e-5
allele num: 18778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1720
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.785e0

QD
type: SiteQuality
SIO_000300: 1.21e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.87e-2

DP
type: SiteQuality
SIO_000300: 5.86857e5

GenotypeQuality
all individuals: 1083
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1406
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3774
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20890
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14986
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 3.74652108756155e-4
allele num: 18684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.875440658049354e-4
allele num: 1702
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 4.354136429608127e-3
allele num: 1378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3190
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.08e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

DP
type: SiteQuality
SIO_000300: 5.90078e5

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21189
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3705
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14948
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7059
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.90975e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

QD
type: SiteQuality
SIO_000300: 1.893e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.415e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13835
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.807200929152149e-4
allele num: 1722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

VQSLOD
type: SiteQuality
SIO_000300: -9.636e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.02762e5

MQ
type: SiteQuality
SIO_000300: 5.916e1

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2391
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25535
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10964
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.896226415094339e-4
allele num: 3392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.990049751243781e-4
allele num: 10050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.32431e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeQuality
all individuals: 839
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2391
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25535
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10964
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.32431e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeQuality
all individuals: 2605
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 672
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27396
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10267
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.891844997108155e-4
allele num: 3458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.942e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.784e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.721e0

DP
type: SiteQuality
SIO_000300: 6.41694e5

QD
type: SiteQuality
SIO_000300: 7.27e0

GenotypeQuality
all individuals: 2425
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6970
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2881
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29944
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.089e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

DP
type: SiteQuality
SIO_000300: 6.88674e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6582
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2307
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 998
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 334
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28499
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2157
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.294889502762431e-4
allele num: 23168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 7.052186177715092e-4
allele num: 1418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

DP
type: SiteQuality
SIO_000300: 7.06456e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.904e-1

FS
type: SiteQuality
SIO_000300: 3.831e0

QD
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 29138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5698
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.770454716838851e-5
allele num: 26522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4156
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

DP
type: SiteQuality
SIO_000300: 7.23035e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.581e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

GenotypeQuality
all individuals: 1790
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5524
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9707
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2932
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.048136083966703e-5
allele num: 11052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.858e1

FS
type: SiteQuality
SIO_000300: 2.741e0

VQSLOD
type: SiteQuality
SIO_000300: -2.425e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

QD
type: SiteQuality
SIO_000300: 6.58e0

DP
type: SiteQuality
SIO_000300: 7.27235e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.94e-1

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29210
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5355
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1726
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.799856011519078e-4
allele num: 11112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.31498e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 28982
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1661
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.34322220590395e-5
allele num: 27236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 3.8012e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.737e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

DP
type: SiteQuality
SIO_000300: 7.38935e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.617e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

FS
type: SiteQuality
SIO_000300: 9.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 7.79e0

DP
type: SiteQuality
SIO_000300: 1.547262e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.171e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.364577689482873e-4
allele num: 66444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.594258042199931e-4
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.547742e6

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

QD
type: SiteQuality
SIO_000300: 1.151e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.515080368430558e-5
allele num: 66444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.151e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 1.547742e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

DP
type: SiteQuality
SIO_000300: 1.544558e6

FS
type: SiteQuality
SIO_000300: 7.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.289e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

Latino
type: Population
allele count: 60
allele frequency: 5.195704883962591e-3
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.981e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

QD
type: SiteQuality
SIO_000300: 1.002e1

DP
type: SiteQuality
SIO_000300: 1.534833e6

FS
type: SiteQuality
SIO_000300: 1.326e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

African
type: Population
allele count: 1
allele frequency: 1.026694045174538e-4
allele num: 9740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.531076e6

FS
type: SiteQuality
SIO_000300: 4.694e0

QD
type: SiteQuality
SIO_000300: 1.313e1

MQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.811e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 8.586e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.21e-1

DP
type: SiteQuality
SIO_000300: 1.481441e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: -4.267e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522301720200944e-5
allele num: 65690
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.267e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 8.586e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.811e0

QD
type: SiteQuality
SIO_000300: 1.257e1

DP
type: SiteQuality
SIO_000300: 1.481441e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.21e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

DP
type: SiteQuality
SIO_000300: 1.459407e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.221e1

MQRankSum
type: SiteQuality
SIO_000300: -1.518e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.122e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526810797605961e-5
allele num: 65496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15012
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

QD
type: SiteQuality
SIO_000300: 1.221e1

MQRankSum
type: SiteQuality
SIO_000300: -1.518e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.122e0

DP
type: SiteQuality
SIO_000300: 1.459407e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.39e-1

FS
type: SiteQuality
SIO_000300: 2.268e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.349e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

DP
type: SiteQuality
SIO_000300: 1.453662e6

QD
type: SiteQuality
SIO_000300: 1.764e1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.058945887247255e-5
allele num: 65382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.197e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.453393e6

QD
type: SiteQuality
SIO_000300: 1.874e1

FS
type: SiteQuality
SIO_000300: 6.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.556e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.454e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.448469e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

FS
type: SiteQuality
SIO_000300: 1.4053e1

VQSLOD
type: SiteQuality
SIO_000300: -8.455e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

South Asian
type: Population
allele count: 3
allele frequency: 2.098489087856743e-4
allele num: 14296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.022e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

DP
type: SiteQuality
SIO_000300: 1.406033e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53727901614143e-5
allele num: 65050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.384e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

FS
type: SiteQuality
SIO_000300: 9.949999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.022e0

DP
type: SiteQuality
SIO_000300: 1.406033e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.454e1

DP
type: SiteQuality
SIO_000300: 1.377337e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4