13-48563120-GAAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563120
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563116
    reference: chr 13
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-8_62-5delTCTT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-8_366-5delTCTT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-8_-131-5delTCTT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-8_272-5delTCTT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12192_90+12195delTCTT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-8_98-5delTCTT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-8_98-5delTCTT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-8_276-5delTCTT
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: c.272-8_272-5delTCTT
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: GAAGA
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-48563120-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563120
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563120
    reference: chr 13
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-4C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-4C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12196C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-4C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-4C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-4C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-4C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-4C>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 7.75e1
  variant carriers: 0
hgvs: c.272-4C>T
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

13-48563124-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563124
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563124
    reference: chr 13
allele count: 2
allele frequency: 1.669058984544514e-5
allele num: 119828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-8T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-8T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-8T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-8T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-8T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12192T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-8T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-8T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 8.25e1
  variant carriers: 0
hgvs: c.272-8T>C
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

13-48563126-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563126
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563126
    reference: chr 13
allele count: 1
allele frequency: 8.347942232239753e-6
allele num: 119790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-10T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-10T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-10T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-10T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-10T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-10T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-10T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12190T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

13-48563128-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563128
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563128
    reference: chr 13
allele count: 1
allele frequency: 8.349475652928997e-6
allele num: 119768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12188T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-12T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-12T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-12T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-12T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-12T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-12T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-12T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

13-48563129-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563129
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563129
    reference: chr 13
allele count: 23
allele frequency: 1.920635981027457e-4
allele num: 119752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-13G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-13G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-13G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12187G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-13G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-13G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-13G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-13G>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

13-48563133-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563133
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563133
    reference: chr 13
allele count: 2
allele frequency: 1.671039219290477e-5
allele num: 119686
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-17A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-17A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-17A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-17A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-17A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-17A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-17A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12183A>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

13-48563135-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563135
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563136
    reference: chr 13
allele count: 1
allele frequency: 8.356173541012099e-6
allele num: 119672
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-20dupT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-20dupT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-20dupT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12180dupT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-20dupT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-20dupT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-20dupT
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-20dupT
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45818
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

13-48563144-T-TTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563144
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563146
    reference: chr 13
allele count: 1
allele frequency: 8.360365180751095e-6
allele num: 119612
alternate allele: TTA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-29_276-28insTA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-29_98-28insTA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-29_272-28insTA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-29_62-28insTA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-29_98-28insTA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-29_-131-28insTA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12171_90+12172insTA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-29_366-28insTA
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

13-48563146-A-ATGAGAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563146
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563152
    reference: chr 13
allele count: 1
allele frequency: 8.361763328650746e-6
allele num: 119592
alternate allele: ATGAGAT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-31_62-30insATCTCA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-31_-131-30insATCTCA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-31_276-30insATCTCA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-31_98-30insATCTCA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-31_98-30insATCTCA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-31_366-30insATCTCA
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-31_272-30insATCTCA
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45818
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

13-48563151-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563151
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563151
    reference: chr 13
allele count: 1
allele frequency: 8.368901163277262e-6
allele num: 119490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12165A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-35A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45812
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

13-48563151-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563151
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563151
    reference: chr 13
allele count: 1
allele frequency: 8.368901163277262e-6
allele num: 119490
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-35A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-35A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-35A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-35A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-35A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-35A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-35A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12165A>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

13-48563161-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563161
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563161
    reference: chr 13
allele count: 2
allele frequency: 1.676698915175802e-5
allele num: 119282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-45A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12155A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-45A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-45A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-45A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-45A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-45A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-45A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

13-48563162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563162
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563162
    reference: chr 13
allele count: 1
allele frequency: 8.388276544701125e-6
allele num: 119214
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-46C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-46C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-46C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12154C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-46C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-46C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-46C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-46C>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

13-48563163-CCAGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48563163
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48563159
    reference: chr 13
allele count: 7
allele frequency: 5.871695074486646e-5
allele num: 119216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.98-51_98-48delTCTG
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.272-51_272-48delTCTG
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.366-51_366-48delTCTG
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.62-51_62-48delTCTG
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.276-51_276-48delTCTG
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.98-51_98-48delTCTG
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-131-51_-131-48delTCTG
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+12149_90+12152delTCTG
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: CCAGA
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

13-48570935-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570935
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570935
    reference: chr 13
allele count: 1
allele frequency: 8.526748409761421e-6
allele num: 117278
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.271+43T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.268+43T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4381T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.275+43T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.97+43T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-229+43T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.97+43T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4381T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17641
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

13-48570943-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570943
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570943
    reference: chr 13
allele count: 484
allele frequency: 4.119078824190226e-3
allele num: 117502
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.271+35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.97+35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4373A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.97+35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.268+35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4373A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-229+35A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.275+35A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 3.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 12837
  bin: 2.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 3.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21612
  bin: 2.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 11
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

13-48570944-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570944
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570944
    reference: chr 13
allele count: 1
allele frequency: 8.510058889607517e-6
allele num: 117508
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-229+34C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.97+34C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.97+34C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.275+34C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.268+34C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.271+34C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4372C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4372C>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21956
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

13-48570948-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570948
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570948
    reference: chr 13
allele count: 1
allele frequency: 8.487235198261813e-6
allele num: 117824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4368T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4368T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.275+30T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.268+30T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.97+30T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.271+30T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-229+30T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.97+30T>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

13-48570953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570953
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570953
    reference: chr 13
allele count: 1
allele frequency: 8.466970348669839e-6
allele num: 118106
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.271+25C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.97+25C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-229+25C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.275+25C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.268+25C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4363C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4363C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.97+25C>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9281
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/13-48570957-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570957
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570957
    reference: chr 13
allele count: 594
allele frequency: 4.997476022211005e-3
allele num: 118860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4359T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.271+21T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.268+21T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-229+21T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4359T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.97+21T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.275+21T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.97+21T>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15067
  bin: 2.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 4.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 3.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 24321
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 3.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 15
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

13-48570972-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570972
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570972
    reference: chr 13
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.271+6A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.97+6A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4344A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.268+6A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-229+6A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.97+6A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.275+6A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4344A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9225
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
hgvs: c.271+6A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

13-48570981-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570981
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570981
    reference: chr 13
allele count: 3
allele frequency: 2.47827379968939e-5
allele num: 121052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.272T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.265T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.268T>A
  hgvsp: ENSP00000367923.3:p.Leu90Ile
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4335T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.94T>A
  hgvsp: ENSP00000441056.1:p.Leu32Ile
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.94T>A
  hgvsp: ENSP00000438182.1:p.Leu32Ile
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4335T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-232T>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu90Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

13-48570993-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570993
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570993
    reference: chr 13
allele count: 180
allele frequency: 1.483826293401919e-3
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.256A>G
  hgvsp: ENSP00000367923.3:p.Ile86Val
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.82A>G
  hgvsp: ENSP00000438182.1:p.Ile28Val
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4323A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4323A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.253A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.260A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.82A>G
  hgvsp: ENSP00000441056.1:p.Ile28Val
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-244A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26264
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 16386
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile86Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

13-48570994-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48570994
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48570994
    reference: chr 13
allele count: 24
allele frequency: 1.978337207577032e-4
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.81A>G
  hgvsp: ENST00000543413.1:c.81A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.259A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.81A>G
  hgvsp: ENST00000534875.1:c.81A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.255A>G
  hgvsp: ENST00000378654.3:c.255A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.252A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4322A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-245A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4322A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16451
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala85Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

13-48571009-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571009
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571009
    reference: chr 13
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.66A>C
  hgvsp: ENST00000534875.1:c.66A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4307A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-260A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4307A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.66A>C
  hgvsp: ENST00000543413.1:c.66A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.240A>C
  hgvsp: ENST00000378654.3:c.240A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.237A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.244A>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro80Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

13-48571013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571013
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571013
    reference: chr 13
allele count: 75
allele frequency: 6.178840355242128e-4
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.233C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.236C>T
  hgvsp: ENSP00000367923.3:p.Ser79Leu
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.240C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.62C>T
  hgvsp: ENSP00000441056.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4303C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-264C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.62C>T
  hgvsp: ENSP00000438182.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4303C>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 16529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser79Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

13-48571017-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571017
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571017
    reference: chr 13
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.232A>C
  hgvsp: ENSP00000367923.3:p.Lys78Gln
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-268A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.229A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.58A>C
  hgvsp: ENSP00000438182.1:p.Lys20Gln
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.58A>C
  hgvsp: ENSP00000441056.1:p.Lys20Gln
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4299A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.236A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4299A>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys78Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

13-48571024-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571024
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571024
    reference: chr 13
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4292T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.225T>C
  hgvsp: ENST00000378654.3:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4292T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-275T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.51T>C
  hgvsp: ENST00000543413.1:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.222T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.51T>C
  hgvsp: ENST00000534875.1:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.229T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr75Tyr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

13-48571025-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571025
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571025
    reference: chr 13
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.228A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.50A>T
  hgvsp: ENSP00000438182.1:p.Tyr17Phe
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.50A>T
  hgvsp: ENSP00000441056.1:p.Tyr17Phe
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4291A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-276A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4291A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.221A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.224A>T
  hgvsp: ENSP00000367923.3:p.Tyr75Phe
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr75Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

13-48571035-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571035
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571035
    reference: chr 13
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.40C>A
  hgvsp: ENSP00000441056.1:p.Pro14Thr
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.40C>A
  hgvsp: ENSP00000438182.1:p.Pro14Thr
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.214C>A
  hgvsp: ENSP00000367923.3:p.Pro72Thr
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-286C>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4281C>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.211C>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4281C>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.218C>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37781
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro72Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/13-48571038-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571038
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571038
    reference: chr 13
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4278G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.208G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.211G>T
  hgvsp: ENSP00000367923.3:p.Val71Phe
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.215G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4278G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-289G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.37G>T
  hgvsp: ENSP00000438182.1:p.Val13Phe
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.37G>T
  hgvsp: ENSP00000441056.1:p.Val13Phe
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val71Phe
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

13-48571038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571038
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571038
    reference: chr 13
allele count: 3
allele frequency: 2.471413978317461e-5
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.37G>A
  hgvsp: ENSP00000441056.1:p.Val13Ile
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.211G>A
  hgvsp: ENSP00000367923.3:p.Val71Ile
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.37G>A
  hgvsp: ENSP00000438182.1:p.Val13Ile
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.208G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4278G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.215G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-289G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4278G>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val71Ile
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

13-48571042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571042
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571042
    reference: chr 13
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4274C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.33C>T
  hgvsp: ENST00000534875.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.207C>T
  hgvsp: ENST00000378654.3:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.204C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-293C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.211C>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.33C>T
  hgvsp: ENST00000543413.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4274C>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9210
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6088
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val69Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/13-48571044-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571044
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571044
    reference: chr 13
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4272G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.205G>T
  hgvsp: ENSP00000367923.3:p.Val69Phe
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4272G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.31G>T
  hgvsp: ENSP00000441056.1:p.Val11Phe
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.209G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.202G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.31G>T
  hgvsp: ENSP00000438182.1:p.Val11Phe
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-295G>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val69Phe
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

13-48571057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571057
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571057
    reference: chr 13
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.189G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-308G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4259G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.192G>A
  hgvsp: ENST00000378654.3:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.18G>A
  hgvsp: ENST00000543413.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4259G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.196G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.18G>A
  hgvsp: ENST00000534875.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu64Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

13-48571059-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571059
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571059
    reference: chr 13
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4257T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.194T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-310T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4257T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.190T>C
  hgvsp: ENST00000378654.3:c.190T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.16T>C
  hgvsp: ENST00000543413.1:c.16T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.16T>C
  hgvsp: ENST00000534875.1:c.16T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.187T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9212
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu64Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-48571064-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571064
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571064
    reference: chr 13
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.11A>T
  hgvsp: ENSP00000438182.1:p.Glu4Val
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-315A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.189A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.185A>T
  hgvsp: ENSP00000367923.3:p.Glu62Val
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.182A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4252A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.11A>T
  hgvsp: ENSP00000441056.1:p.Glu4Val
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4252A>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu62Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

13-48571074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571074
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571074
    reference: chr 13
allele count: 4
allele frequency: 3.295272930980509e-5
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.175A>G
  hgvsp: ENSP00000367923.3:p.Met59Val
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4242A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.1A>G
  hgvsp: ENSP00000441056.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.172A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-325A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.1A>G
  hgvsp: ENSP00000438182.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4242A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.179A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

13-48571078-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571078
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571078
    reference: chr 13
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.171A>G
  hgvsp: ENST00000378654.3:c.171A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-329A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.175A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4238A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-4A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.168A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-4A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4238A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu57Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-48571081-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571081
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571081
    reference: chr 13
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.168T>A
  hgvsp: ENSP00000367923.3:p.His56Gln
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4235T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-7T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.172T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4235T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-332T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.165T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-7T>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6091
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9210
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His56Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

13-48571082-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571082
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571082
    reference: chr 13
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4234A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-8A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-333A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.167A>G
  hgvsp: ENSP00000367923.3:p.His56Arg
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-8A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.171A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.164A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4234A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37751
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His56Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

13-48571087-TGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571087
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571085
    reference: chr 13
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.160_161delTC
  hgvsp: ENSP00000367923.3:p.Ser54ThrfsTer3
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-15_-14delTC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.157_158delTC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4227_90+4228delTC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.164_165delTC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-340_-339delTC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-15_-14delTC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4227_61+4228delTC
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9210
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser54ThrfsTer3
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: TGA
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

13-48571105-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571105
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571105
    reference: chr 13
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4211A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.144A>G
  hgvsp: ENST00000378654.3:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.148A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-356A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4211A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.141A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9211
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln48Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

13-48571106-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571106
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571106
    reference: chr 13
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.147A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.143A>G
  hgvsp: ENSP00000367923.3:p.Gln48Arg
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4210A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-357A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4210A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.140A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9210
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6045
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln48Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

13-48571113-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571113
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571113
    reference: chr 13
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-39C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-39C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4203C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-364C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.133C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.140C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4203C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.136C>G
  hgvsp: ENSP00000367923.3:p.Gln46Glu
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6034
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln46Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

13-48571117-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571117
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571117
    reference: chr 13
allele count: 4
allele frequency: 3.301092661671013e-5
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.136A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4199A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-368A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-43A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.132A>C
  hgvsp: ENSP00000367923.3:p.Gln44His
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.129A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-43A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4199A>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37517
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln44His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

13-48571126-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571126
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571126
    reference: chr 13
allele count: 3
allele frequency: 2.477005135657315e-5
allele num: 121114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-52T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4190T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.120T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-52T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4190T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-377T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.123T>C
  hgvsp: ENST00000378654.3:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.127T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9211
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His41His
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

13-48571127-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571127
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571127
    reference: chr 13
allele count: 4
allele frequency: 3.302728053372085e-5
allele num: 121112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-378A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-53A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-53A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.119A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.122A>G
  hgvsp: ENSP00000367923.3:p.His41Arg
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4189A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.126A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4189A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9212
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His41Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

13-48571135-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571135
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571135
    reference: chr 13
allele count: 2
allele frequency: 1.653111155194075e-5
allele num: 120984
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.114T>C
  hgvsp: ENST00000378654.3:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-61T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.118T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-386T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.111T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4181T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-61T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4181T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe38Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/13-48571139-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571139
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571139
    reference: chr 13
allele count: 815
allele frequency: 6.740662321765309e-3
allele num: 120908
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4177T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4177T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-65T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.107T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.114T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.110T>G
  hgvsp: ENSP00000367923.3:p.Leu37Trp
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-390T>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-65T>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 4.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 25716
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 6.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 6.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9733
  bin: 9.75e1
  variant carriers: 771
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu37Trp
num of homozygotes: 35
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

13-48571142-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571142
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571142
    reference: chr 13
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4174G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.111G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-68G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.107G>C
  hgvsp: ENSP00000367923.3:p.Gly36Ala
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-393G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4174G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-68G>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.104G>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9078
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly36Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

13-48571147-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571147
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571147
    reference: chr 13
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.102T>A
  hgvsp: ENSP00000367923.3:p.Ser34Arg
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-398T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-73T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-73T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.106T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.99T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4169T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4169T>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9079
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser34Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

13-48571159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571159
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571159
    reference: chr 13
allele count: 1
allele frequency: 8.321544478655239e-6
allele num: 120170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-1G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-1G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4157G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-1G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4157G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-1G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-1G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-1G>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: c.91-1G>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

13-48571169-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571169
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571168
    reference: chr 13
allele count: 1
allele frequency: 8.363161944267889e-6
allele num: 119572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-12delC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-12delC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-12delC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4146delC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-12delC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-12delC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-12delC
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4146delC
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9076
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: TG
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

13-48571171-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571171
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571171
    reference: chr 13
allele count: 2
allele frequency: 1.673444115333769e-5
allele num: 119514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-13C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-13C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4145C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-13C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-13C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-13C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4145C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-13C>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/13-48571175-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571175
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571175
    reference: chr 13
allele count: 1
allele frequency: 8.380965151946898e-6
allele num: 119318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-17G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-17G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-17G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-17G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-17G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4141G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-17G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4141G>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

13-48571176-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571176
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571176
    reference: chr 13
allele count: 1
allele frequency: 8.391514500537057e-6
allele num: 119168
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-18T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-18T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-18T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4140T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-18T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4140T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-18T>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-18T>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

13-48571182-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571182
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571182
    reference: chr 13
allele count: 2
allele frequency: 1.679091947075022e-5
allele num: 119112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-24T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-24T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-24T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-24T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4134T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-24T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-24T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4134T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

13-48571183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571183
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571183
    reference: chr 13
allele count: 1
allele frequency: 8.403220113947665e-6
allele num: 119002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-25A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4133A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4133A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-25A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-25A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-25A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-25A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-25A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

13-48571184-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571184
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571184
    reference: chr 13
allele count: 3
allele frequency: 2.520584775667955e-5
allele num: 119020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4132T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-26T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-26T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-26T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-26T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-26T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-26T>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4132T>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

13-48571208-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48571208
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48571208
    reference: chr 13
allele count: 1
allele frequency: 8.556808652644909e-6
allele num: 116866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-409-50A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.91-50A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.95-50A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000438182
  ensembl transcript: ENST00000534875
  gene symbol: SUCLA2
  hgvsc: ENST00000534875.1:c.-84-50A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+4108A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-50A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.88-50A>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+4108A>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9065
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/13-48575267-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575267
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575267
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 45248
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+49G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+49G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+49G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+49G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+49G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4109G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+49G>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26318
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4310
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7769
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

13-48575271-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575271
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575271
    reference: chr 13
allele count: 3
allele frequency: 6.587036711751273e-5
allele num: 45544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+45A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+45A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4113A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+45A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+45A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+45A>C
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+45A>C
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4877
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6376
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7850
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

13-48575272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575272
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575272
    reference: chr 13
allele count: 1
allele frequency: 2.191636714298238e-5
allele num: 45628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+44A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+44A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+44A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+44A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+44A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4114A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+44A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26627
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6377
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7846
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

13-48575275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575275
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575275
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 45800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+41G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4117G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+41G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+41G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+41G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+41G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+41G>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27103
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20220
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

13-48575276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575276
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575276
    reference: chr 13
allele count: 1
allele frequency: 2.177131411652007e-5
allele num: 45932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+40G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+40G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+40G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4118G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+40G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+40G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+40G>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6378
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

13-48575281-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575281
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575281
    reference: chr 13
allele count: 1
allele frequency: 2.099869808071899e-5
allele num: 47622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+35C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+35C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+35C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4123C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+35C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+35C>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+35C>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6379
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/13-48575285-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575285
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575285
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 49134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+31G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4127G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+31G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+31G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+31G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+31G>T
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+31G>T
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28915
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5166
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26022
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

13-48575285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575285
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575285
    reference: chr 13
allele count: 1
allele frequency: 2.035250539341393e-5
allele num: 49134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+31G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+31G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+31G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4127G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+31G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+31G>A
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+31G>A
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11486
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26022
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5166
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

13-48575286-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48575286
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 48575286
    reference: chr 13
allele count: 44
allele frequency: 8.853474988933156e-4
allele num: 49698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000392771
  ensembl transcript: ENST00000434484
  gene symbol: SUCLA2
  hgvsc: ENST00000434484.1:c.61+30A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000441056
  ensembl transcript: ENST00000543413
  gene symbol: SUCLA2
  hgvsc: ENST00000543413.1:c.-84-4128A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000443412
  ensembl transcript: ENST00000544100
  gene symbol: SUCLA2
  hgvsc: ENST00000544100.1:c.-410+30A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000367923
  ensembl transcript: ENST00000378654
  gene symbol: SUCLA2
  hgvsc: ENST00000378654.3:c.90+30A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000497202
  gene symbol: SUCLA2
  hgvsc: ENST00000497202.1:n.87+30A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl transcript: ENST00000470760
  gene symbol: SUCLA2
  hgvsc: ENST00000470760.1:n.94+30A>G
  variant of: http://identifiers.org/hgnc/11448
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136143
  ensembl protein: ENSP00000415091
  ensembl transcript: ENST00000433022
  gene symbol: SUCLA2
  hgvsc: ENST00000433022.1:c.90+30A>G
  variant of: http://identifiers.org/hgnc/11448
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29023
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11339
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6405
  bin: 9.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
reference allele: T

GenotypeQuality
all individuals: 145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45822
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3313
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518095700752976e-5
allele num: 65872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 3.522198e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45822
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 3.522198e6

GenotypeQuality
all individuals: 869
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45828
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.740644038294169e-4
allele num: 11490
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65870
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
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SIO_000300: -3.466e-1

ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 6.75e0

MQRankSum
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SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.520796e6

QD
type: SiteQuality
SIO_000300: 1.615e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.005227181342983e-4
allele num: 9948
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.89e0

DP
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MQRankSum
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BaseQRankSum
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SIO_000300: 5.48e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.098304671301378e-5
allele num: 16398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQRankSum
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SIO_000300: 7.25e-1

BaseQRankSum
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SIO_000300: 5.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

DP
type: SiteQuality
SIO_000300: 3.518563e6

QD
type: SiteQuality
SIO_000300: 1.981e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.00664384940608e-4
allele num: 9934
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 1.974483596597813e-4
allele num: 65840
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.740644038294169e-4
allele num: 11490
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.659429129055868e-4
allele num: 16396
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

FS
type: SiteQuality
SIO_000300: 1.632e0

DP
type: SiteQuality
SIO_000300: 3.518159e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.03951367781155e-5
allele num: 65800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.645e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

DP
type: SiteQuality
SIO_000300: 3.515433e6

QD
type: SiteQuality
SIO_000300: 1.818e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.776999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.053e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519756838905775e-5
allele num: 65800
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9902
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.514478e6

ReadPosRankSum
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SIO_000300: 1.78e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
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SIO_000300: -9.0e-4

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.022e1

ClippingRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8582
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520681265206813e-5
allele num: 65760
num of homozygotes: 0

Other
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allele count: 0
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BaseQRankSum
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FS
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MQ
type: SiteQuality
SIO_000300: 3.496e1

VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520866285436184e-5
allele num: 65752
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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MQRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele num: 9820
num of homozygotes: 0

Other
type: Population
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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QD
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.512e1

FS
type: SiteQuality
SIO_000300: 2.956e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 3.506447e6

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 872
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220256253813301e-4
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.456e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

FS
type: SiteQuality
SIO_000300: 1.3811e1

MQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: -1.72e0

DP
type: SiteQuality
SIO_000300: 3.499758e6

QD
type: SiteQuality
SIO_000300: 1.533e1

GenotypeQuality
all individuals: 364
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.762e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.442e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.497861e6

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-1

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742160278745645e-4
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.099606575375888e-5
allele num: 65578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.991e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

DP
type: SiteQuality
SIO_000300: 3.497577e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.216e1

MQ
type: SiteQuality
SIO_000300: 5.557e1

GenotypeQuality
all individuals: 2072
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1831
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GenotypeQuality
all individuals: 1568
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559429872438636e-5
allele num: 64126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 1.68771e6

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

QD
type: SiteQuality
SIO_000300: 9.65e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 28266
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1555
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GenotypeQuality
all individuals: 9719
bin: 9.75e1
variant carriers: 463

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Latino
type: Population
allele count: 459
allele frequency: 4.070592408655552e-2
allele num: 11276
num of homozygotes: 11

African
type: Population
allele count: 16
allele frequency: 1.577287066246057e-3
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.224324660774306e-5
allele num: 64264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.63063063063063e-3
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.607e1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.727493e6

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.797e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
all individuals: 1839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 300
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GenotypeQuality
all individuals: 650
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556565593674117e-5
allele num: 64244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.727937e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 882
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 589
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.767e1

VQSLOD
type: SiteQuality
SIO_000300: -1.315e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 1.745389e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 4.193e0

MQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.21300339640951e-4
allele num: 8244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.770753e6

VQSLOD
type: SiteQuality
SIO_000300: -2.21e0

QD
type: SiteQuality
SIO_000300: 4.74e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.328e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

FS
type: SiteQuality
SIO_000300: 1.463e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 646
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GenotypeQuality
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variant carriers: 571

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 915
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GenotypeQuality
all individuals: 594
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 528
allele frequency: 5.143191116306254e-2
allele num: 10266
num of homozygotes: 14

South Asian
type: Population
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.592841163310962e-3
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.766421787108475e-4
allele num: 65066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Latino
type: Population
allele count: 42
allele frequency: 3.677114340745929e-3
allele num: 11422
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 7.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

QD
type: SiteQuality
SIO_000300: 1.519e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
type: SiteQuality
SIO_000300: 5.747e1

VQSLOD
type: SiteQuality
SIO_000300: 8.23e-1

DP
type: SiteQuality
SIO_000300: 1.796265e6

GenotypeQuality
all individuals: 36658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 1574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511076188461422e-5
allele num: 66178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.47e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.121e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.812466e6

MQ
type: SiteQuality
SIO_000300: 5.739e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6073
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variant carriers: 0

GenotypeQuality
all individuals: 9229
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.508566275924256e-5
allele num: 66540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.795e0

QD
type: SiteQuality
SIO_000300: 1.148e1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.383e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.822198e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.64e-1

MQ
type: SiteQuality
SIO_000300: 5.73e1

GenotypeQuality
all individuals: 2405
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 180

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 37565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99895036737142e-5
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 173
allele frequency: 1.664421781797191e-2
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.326007959854646e-4
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

MQ
type: SiteQuality
SIO_000300: 5.707e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

QD
type: SiteQuality
SIO_000300: 1.375e1

DP
type: SiteQuality
SIO_000300: 1.832133e6

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9229
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
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variant carriers: 0

GenotypeQuality
all individuals: 6085
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 37661
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variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.020396382528382e-3
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.595155709342561e-4
allele num: 11560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

MQ
type: SiteQuality
SIO_000300: 5.658e1

VQSLOD
type: SiteQuality
SIO_000300: -7.91e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 1.159e0

QD
type: SiteQuality
SIO_000300: 1.194e1

DP
type: SiteQuality
SIO_000300: 1.824963e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

GenotypeQuality
all individuals: 2407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 658
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37770
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 9213
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variant carriers: 2

GenotypeQuality
all individuals: 933
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.755e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 6.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.824761e6

VQSLOD
type: SiteQuality
SIO_000300: -1.691e0

QD
type: SiteQuality
SIO_000300: 1.116e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 1562
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2008
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 9273
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 53
allele frequency: 7.943883209928355e-4
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 2.721499848805564e-3
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.273e1

VQSLOD
type: SiteQuality
SIO_000300: -2.094e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.518e0

DP
type: SiteQuality
SIO_000300: 1.82854e6

MQ
type: SiteQuality
SIO_000300: 5.708e1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

QD
type: SiteQuality
SIO_000300: 1.833e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.767e1

VQSLOD
type: SiteQuality
SIO_000300: -1.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.82524e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -8.928e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.686e1

FS
type: SiteQuality
SIO_000300: 2.769e0

DP
type: SiteQuality
SIO_000300: 1.825088e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

QD
type: SiteQuality
SIO_000300: 1.575e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9208
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variant carriers: 1

East Asian
type: Population
allele count: 0
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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FS
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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South Asian
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African
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European (Non-Finnish)
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East Asian
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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FS
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DP
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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Other
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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QD
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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South Asian
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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DP
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FS
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VQSLOD
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QD
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MQ
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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African
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European (Non-Finnish)
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FS
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ClippingRankSum
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994844433786943e-5
allele num: 66724
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.449e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

FS
type: SiteQuality
SIO_000300: 9.0e-1

VQSLOD
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SIO_000300: -1.273e0

MQ
type: SiteQuality
SIO_000300: 4.907e1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 1.825381e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 7.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.264e0

MQ
type: SiteQuality
SIO_000300: 5.187e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

QD
type: SiteQuality
SIO_000300: 1.394e1

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

DP
type: SiteQuality
SIO_000300: 1.82521e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.825138e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.049e0

MQ
type: SiteQuality
SIO_000300: 5.713e1

FS
type: SiteQuality
SIO_000300: 2.206e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.719e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

QD
type: SiteQuality
SIO_000300: 1.547e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.825164e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 4.886e1

FS
type: SiteQuality
SIO_000300: 4.676e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 655
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.725e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.824989e6

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.793e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

MQ
type: SiteQuality
SIO_000300: 4.964e1

DP
type: SiteQuality
SIO_000300: 1.822904e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.735e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

DP
type: SiteQuality
SIO_000300: 1.822869e6

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -1.632e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.808e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.821136e6

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.337e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.677e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.003003003003003e-5
allele num: 66600
num of homozygotes: 0

African
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Latino
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allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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QD
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.506805275966709e-5
allele num: 66566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.244e1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

DP
type: SiteQuality
SIO_000300: 1.817948e6

VQSLOD
type: SiteQuality
SIO_000300: -2.741e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQ
type: SiteQuality
SIO_000300: 4.633e1

FS
type: SiteQuality
SIO_000300: 1.4099e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2391
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.009254251547383e-5
allele num: 66564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.259e1

MQ
type: SiteQuality
SIO_000300: 4.637e1

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

FS
type: SiteQuality
SIO_000300: 3.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.818095e6

VQSLOD
type: SiteQuality
SIO_000300: -1.712e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007699711260828e-5
allele num: 66496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 4.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -8.885e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 1.815705e6

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 3

GenotypeQuality
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bin: 7.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818843215714805e-4
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 41
allele frequency: 3.546099290780142e-3
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 744
allele frequency: 7.269884698065272e-2
allele num: 10234
num of homozygotes: 35

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.762114007102871e-4
allele num: 66452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

FS
type: SiteQuality
SIO_000300: 5.74e-1

MQ
type: SiteQuality
SIO_000300: 4.97e1

QD
type: SiteQuality
SIO_000300: 1.44e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.320000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.843672e6

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1953
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 1522
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variant carriers: 0

GenotypeQuality
all individuals: 5892
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variant carriers: 0

GenotypeQuality
all individuals: 624
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variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.758e0

DP
type: SiteQuality
SIO_000300: 1.804196e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.206e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.759e1

MQRankSum
type: SiteQuality
SIO_000300: 6.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.399e0

GenotypeQuality
all individuals: 37220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5891
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 922
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 1952
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
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variant carriers: 0

GenotypeQuality
all individuals: 2319
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510209012927389e-5
allele num: 66216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.387e1

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

QD
type: SiteQuality
SIO_000300: 1.261e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.803453e6

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 1938
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variant carriers: 0

GenotypeQuality
all individuals: 134
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GenotypeQuality
all individuals: 177
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GenotypeQuality
all individuals: 9077
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515518913676043e-5
allele num: 65984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.795334e6

QD
type: SiteQuality
SIO_000300: 1.411e1

VQSLOD
type: SiteQuality
SIO_000300: -1.923e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

FS
type: SiteQuality
SIO_000300: 1.0579e1

GenotypeQuality
all individuals: 921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35218
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 5702
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.083465141744738e-5
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.572e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.856e0

FS
type: SiteQuality
SIO_000300: 1.763e0

DP
type: SiteQuality
SIO_000300: 1.776804e6

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5674
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 9075
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variant carriers: 2

GenotypeQuality
all individuals: 1918
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 1509
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GenotypeQuality
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GenotypeQuality
all individuals: 2271
bin: 7.75e1
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GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.05101293629485e-5
allele num: 65552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 1.095e1

QD
type: SiteQuality
SIO_000300: 1.1e1

DP
type: SiteQuality
SIO_000300: 1.775446e6

VQSLOD
type: SiteQuality
SIO_000300: -1.042e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.215e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.04e-1

MQ
type: SiteQuality
SIO_000300: 5.589e1

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
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GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
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GenotypeQuality
all individuals: 1907
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.088650754992694e-5
allele num: 16424
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.427e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.99e-1

FS
type: SiteQuality
SIO_000300: 4.406e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
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SIO_000300: -5.33e-1

DP
type: SiteQuality
SIO_000300: 1.764954e6

QD
type: SiteQuality
SIO_000300: 2.998e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531393568147014e-5
allele num: 65300
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.148e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 9.66e0

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65280
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.035002035002035e-4
allele num: 9828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.617e1

DP
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SIO_000300: 1.741241e6

MQ
type: SiteQuality
SIO_000300: 5.613e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 3.613e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533648242439114e-5
allele num: 65204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.528e1

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.390000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: -8.599e-1

DP
type: SiteQuality
SIO_000300: 1.732937e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.600239212439047e-5
allele num: 65214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.541e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.914e1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.408e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 1.732836e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56710336613803e-5
allele num: 63812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

MQ
type: SiteQuality
SIO_000300: 5.336e1

DP
type: SiteQuality
SIO_000300: 1.639917e6

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 9.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1078
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4050
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South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.592000000000001e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.178e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24762
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.090871625798475e-4
allele num: 9706
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.37e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 2.59e-1

DP
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.78e-2

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.408e1

MQ
type: SiteQuality
SIO_000300: 5.995e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.031282754172378e-5
allele num: 24806
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2312
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
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QD
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FS
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2328
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
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ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
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SIO_000300: 8.87685e5

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5365
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.996802557953637e-5
allele num: 25020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.678e0

DP
type: SiteQuality
SIO_000300: 8.91067e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

MQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.505e0

GenotypeQuality
all individuals: 5377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6688
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4395
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.017293997965412e-4
allele num: 9830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26030
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.17e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 9.17669e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 5763
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6386
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

FS
type: SiteQuality
SIO_000300: 7.123e0

DP
type: SiteQuality
SIO_000300: 9.41707e5

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5763
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2346
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6386
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 3.723008190618019e-4
allele num: 2686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.324e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 7.123e0

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

DP
type: SiteQuality
SIO_000300: 9.41707e5

MQ
type: SiteQuality
SIO_000300: 6.0e1