11-93466719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466719
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466719
    reference: chr 11
allele count: 1
allele frequency: 8.876422446697082e-6
allele num: 112658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-156G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2296G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-48G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1109G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-134G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-134G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-156G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.45G>A
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-156G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-156G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-156G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-156G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-156G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-156G>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

11-93466722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466722
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466722
    reference: chr 11
allele count: 611
allele frequency: 5.423205282965277e-3
allele num: 112664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1106A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-159A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-51A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-159A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-159A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2293A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-137A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-159A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.42A>G
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-159A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-137A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-159A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-159A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-159A>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
num of homozygotes: 3
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-93466741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466741
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466741
    reference: chr 11
allele count: 1
allele frequency: 8.875634607874463e-6
allele num: 112668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-178C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-178C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-70C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-156C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2274C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-178C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-178C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-156C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-178C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.23C>T
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-178C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-178C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1087C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-178C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

11-93466742-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466742
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466742
    reference: chr 11
allele count: 1
allele frequency: 8.876107294384975e-6
allele num: 112662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-71G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1086G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.22G>C
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2273G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-157G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-179G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-179G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-179G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-179G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-179G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-179G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-157G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-179G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-179G>C
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-93466746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466746
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466746
    reference: chr 11
allele count: 1
allele frequency: 8.877210425395924e-6
allele num: 112648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-183T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.18T>C
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-183T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-183T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1082T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2269T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-75T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-183T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-183T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-161T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-161T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-183T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-183T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-183T>C
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-93466748-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466748
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466748
    reference: chr 11
allele count: 1
allele frequency: 8.878156184523599e-6
allele num: 112636
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-185G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-185G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-185G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-163G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-185G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-185G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-185G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1080G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-163G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.16G>C
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2267G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-77G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-185G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-185G>C
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

11-93466749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466749
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466749
    reference: chr 11
allele count: 3
allele frequency: 2.663446855357079e-5
allele num: 112636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-186C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-186C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1079C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-164C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-186C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-186C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-186C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.15C>T
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-186C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2266C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-164C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-78C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-186C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-186C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

11-93466752-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466752
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466752
    reference: chr 11
allele count: 1
allele frequency: 8.879575201122378e-6
allele num: 112618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-189T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-167T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-189T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1076T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-189T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2263T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-189T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.12T>C
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-189T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-167T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-189T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-189T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-81T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-189T>C
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

11-93466753-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466753
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466753
    reference: chr 11
allele count: 1
allele frequency: 8.87973289763444e-6
allele num: 112616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1075A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-82A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2262A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.11A>G
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-190A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-190A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-190A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-190A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-168A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-190A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-190A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-190A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-168A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-190A>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-93466753-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466753
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466753
    reference: chr 11
allele count: 1
allele frequency: 8.87973289763444e-6
allele num: 112616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-190A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.11A>C
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-190A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-190A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1075A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-168A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-190A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2262A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-190A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-190A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-82A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-168A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-190A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-190A>C
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

11-93466759-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466759
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466759
    reference: chr 11
allele count: 1
allele frequency: 8.886203280786251e-6
allele num: 112534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-174A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-196A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-196A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2256A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-174A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-196A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-196A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-196A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-88A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-196A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1069A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-196A>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.5A>C
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-196A>C
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-93466760-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466760
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466760
    reference: chr 11
allele count: 1
allele frequency: 8.886203280786251e-6
allele num: 112534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-89G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000207145
  ensembl transcript: ENST00000384416
  gene symbol: SNORA18
  hgvsc: ENST00000384416.1:n.4G>T
  variant of: http://identifiers.org/hgnc/32608
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-197G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-197G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-175G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-197G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1068G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-197G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2255G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-197G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-175G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-197G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-197G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-197G>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/11-93466766-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466766
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466766
    reference: chr 11
allele count: 17
allele frequency: 1.513047812310869e-4
allele num: 112356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-203G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-203G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-203G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-181G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-181G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-203G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-203G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2249G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-203G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-203G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-203G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1062G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-95G>T
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-93466768-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466768
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466767
    reference: chr 11
allele count: 1
allele frequency: 8.908209806157355e-6
allele num: 112256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-184delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-206delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2246delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-184delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-206delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-206delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-206delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1059delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-206delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-206delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-206delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-98delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-206delA
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: AT
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

11-93466770-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466770
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466770
    reference: chr 11
allele count: 1
allele frequency: 8.924268656183625e-6
allele num: 112054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-207A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2245A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-207A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-207A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-207A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-207A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1058A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-185A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-207A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-207A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-207A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-185A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-99A>T
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14922
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

11-93466773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466773
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466773
    reference: chr 11
allele count: 1
allele frequency: 8.930644613928233e-6
allele num: 111974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-210G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-210G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-188G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1055G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-188G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-102G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-210G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-210G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-210G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-210G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2242G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-210G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-210G>A
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-93466776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466776
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466776
    reference: chr 11
allele count: 4
allele frequency: 3.577369560162412e-5
allele num: 111814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-191C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-213C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-213C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-213C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-191C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-105C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-213C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-213C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1052C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-213C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-213C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-213C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

11-93466783-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466783
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466784
    reference: chr 11
allele count: 84
allele frequency: 7.650273224043716e-4
allele num: 109800
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-199dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-221dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-221dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2231dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-221dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-199dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-113dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1044dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-221dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-221dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-221dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-221dupA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-221dupA
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS

11-93466783-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466783
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466782
    reference: chr 11
allele count: 37
allele frequency: 3.36976320582878e-4
allele num: 109800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-221delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-199delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-221delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1044delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-221delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-221delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-221delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-221delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-113delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-221delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2231delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-199delA
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-221delA
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: AT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-93466784-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466784
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466784
    reference: chr 11
allele count: 163
allele frequency: 1.490299339879679e-3
allele num: 109374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2231A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-221A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-199A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-221A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-221A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-221A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-113A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-199A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-221A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1044A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-221A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-221A>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-221A>T
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11169
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11651
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 2
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

11-93466801-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466801
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466801
    reference: chr 11
allele count: 1
allele frequency: 9.229349330872173e-6
allele num: 108350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-216T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2214T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-238T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-238T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-216T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-130T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-238T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-238T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-238T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-238T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1027T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-238T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-238T>C
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

11-93466802-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466802
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466802
    reference: chr 11
allele count: 1
allele frequency: 9.231394125140779e-6
allele num: 108326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1026C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2213C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-217C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-217C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-239C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-131C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

11-93466802-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466802
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466802
    reference: chr 11
allele count: 1
allele frequency: 9.231394125140779e-6
allele num: 108326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-239C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-239C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-239C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-239C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-217C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-239C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-217C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-131C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2213C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-239C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-239C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1026C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-239C>G
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-93466803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466803
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466803
    reference: chr 11
allele count: 1
allele frequency: 9.247443081987831e-6
allele num: 108138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-240C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2212C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-218C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-240C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-240C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-240C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-218C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1025C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-240C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-240C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-240C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-240C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-132C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-93466804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466804
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466804
    reference: chr 11
allele count: 1
allele frequency: 9.248982611912689e-6
allele num: 108120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-219T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-133T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-241T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-241T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-241T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-241T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2211T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1024T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-241T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-241T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-241T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-219T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-241T>C
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

11-93466805-T-TCTGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466809
    reference: chr 11
allele count: 4
allele frequency: 3.70844226882498e-5
allele num: 107862
alternate allele: TCTGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1019_1022dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-246_1196-243dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-224_615-221dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-246_931-243dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-246_*57-243dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2206_2209dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-246_100-243dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-138_*57-135dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-246_703-243dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-246_*57-243dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-224_1250-221dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-246_*57-243dupGCAG
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-246_*24-243dupGCAG
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

11-93466811-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466811
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466811
    reference: chr 11
allele count: 1
allele frequency: 9.332711152589827e-6
allele num: 107150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-140T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2204T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1017T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-226T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-248T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-248T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-248T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-248T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-248T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-248T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-248T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-226T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-248T>C
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-93466811-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466811
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466811
    reference: chr 11
allele count: 2
allele frequency: 1.866542230517965e-5
allele num: 107150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-248T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1017T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-248T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-248T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-248T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-248T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-226T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-248T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-226T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2204T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-140T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-248T>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-248T>A
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

11-93466812-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466812
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466812
    reference: chr 11
allele count: 1
allele frequency: 9.325748391308402e-6
allele num: 107230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-249A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-249A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-227A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-249A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1016A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-249A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-227A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-141A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2203A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-249A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-249A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-249A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-249A>G
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/11-93466815-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466815
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466815
    reference: chr 11
allele count: 1
allele frequency: 9.364172675344134e-6
allele num: 106790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-252G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-252G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1013G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-252G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2200G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-230G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-252G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-252G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-144G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-252G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-230G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-252G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-252G>T
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-93466815-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466815
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466815
    reference: chr 11
allele count: 1
allele frequency: 9.364172675344134e-6
allele num: 106790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-252G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-252G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-252G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-252G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-230G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-252G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2200G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-252G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-230G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1013G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-252G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-252G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-144G>C
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

11-93466816-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466816
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466816
    reference: chr 11
allele count: 2
allele frequency: 1.873150264114187e-5
allele num: 106772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-231A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-253A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-253A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-253A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-253A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-253A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1012A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2199A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-253A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-231A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-253A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-145A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-253A>G
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

11-93466818-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466818
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466818
    reference: chr 11
allele count: 1
allele frequency: 9.390200386876256e-6
allele num: 106494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-255A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-255A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-255A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1010A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-255A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-147A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2197A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-255A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-255A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-233A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-255A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-255A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-233A>G
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-93466826-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466826
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466826
    reference: chr 11
allele count: 5
allele frequency: 4.727327736177294e-5
allele num: 105768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-263G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2189G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1002G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-263G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-263G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-155G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-241G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-263G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-263G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-241G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-263G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-263G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-263G>A
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

11-93466826-CGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466826
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466824
    reference: chr 11
allele count: 1
allele frequency: 9.454655472354587e-6
allele num: 105768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-265_1196-264delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-243_615-242delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-265_931-264delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-265_*24-264delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-243_1250-242delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2187_2188delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-265_*57-264delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1000_1001delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-157_*57-156delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-265_703-264delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-265_100-264delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-265_*57-264delAC
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-265_*57-264delAC
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: CGT
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

11-93466827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466827
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466827
    reference: chr 11
allele count: 4
allele frequency: 3.782005219167203e-5
allele num: 105764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-264C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2188C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-264C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-264C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-242C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-242C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-264C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.1001C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-264C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-264C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-264C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-264C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-156C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

11-93466835-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466835
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466835
    reference: chr 11
allele count: 3
allele frequency: 2.864125868784847e-5
allele num: 104744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-272G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-272G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-272G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-272G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-272G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.993G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-272G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-250G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-272G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-272G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-164G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2180G>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-250G>C
  variant of: http://identifiers.org/hgnc/28759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

11-93466841-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466841
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466842
    reference: chr 11
allele count: 5
allele frequency: 4.800583750984119e-5
allele num: 104154
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.89dupT
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-257dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-279dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2173dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-279dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-279dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.986dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-279dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-171dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-279dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-257dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-279dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-279dupT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-279dupT
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12665
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-93466846-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466846
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466846
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 103832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-283T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-283T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.982T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-283T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.85T>G
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-261T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2169T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-283T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-261T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-283T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-283T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-283T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-175T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-283T>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/11-93466855-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466855
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466854
    reference: chr 11
allele count: 2
allele frequency: 1.937984496124031e-5
allele num: 103200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-293delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-293delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.75delT
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-293delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-293delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-293delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2159delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-271delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-293delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-185delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.972delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-293delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-271delT
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-293delT
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: CA
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

11-93466857-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466857
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466857
    reference: chr 11
allele count: 2
allele frequency: 1.942992597198205e-5
allele num: 102934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-294C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-294C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-294C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2158C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-294C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-272C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-294C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-294C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-272C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.971C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.74C>G
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-294C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-294C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-186C>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-93466858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466858
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466858
    reference: chr 11
allele count: 1
allele frequency: 9.717606359201602e-6
allele num: 102906
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.73C>G
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-273C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-187C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2157C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-295C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-295C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.970C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-273C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-295C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-295C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-295C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-295C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-295C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-295C>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

11-93466859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466859
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466859
    reference: chr 11
allele count: 1
allele frequency: 9.728194252582836e-6
allele num: 102794
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.72C>T
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-296C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-274C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2156C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.969C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-296C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-274C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-296C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-296C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-296C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-296C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-296C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-296C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-188C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

11-93466859-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466859
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466859
    reference: chr 11
allele count: 1
allele frequency: 9.728194252582836e-6
allele num: 102794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-296C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-296C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.969C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-296C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.72C>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-296C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-274C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2156C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-296C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-296C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-296C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-296C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-188C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-274C>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-93466860-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466860
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466860
    reference: chr 11
allele count: 12
allele frequency: 1.167883211678832e-4
allele num: 102750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-297C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-297C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2155C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-297C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.968C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-275C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.71C>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-297C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-297C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-275C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-297C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-189C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-297C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-297C>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6385
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

11-93466863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466863
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466863
    reference: chr 11
allele count: 4
allele frequency: 3.9000039000039e-5
allele num: 102564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.965G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-300G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-300G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2152G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-300G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-300G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-300G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-278G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-300G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-192G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.68G>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-300G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-278G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-300G>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

11-93466864-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466864
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466864
    reference: chr 11
allele count: 1
allele frequency: 9.760096820160457e-6
allele num: 102458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-301C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-193C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-301C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-279C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.67C>T
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-301C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-301C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.964C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-301C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2151C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-301C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-301C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-279C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-301C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10724
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-93466866-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466866
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466866
    reference: chr 11
allele count: 98562
allele frequency: 9.60137939096382e-1
allele num: 102654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-303C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-303C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2149C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-195C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-303C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.65C>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-281C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.962C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-281C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-303C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-303C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-303C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-303C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-303C>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 5.25e1
  variant carriers: 6398
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 3.25e1
  variant carriers: 2660
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 7.25e1
  variant carriers: 2458
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.75e1
  variant carriers: 1474
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 4.25e1
  variant carriers: 5577
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.25e1
  variant carriers: 697
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 3544
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 7.75e1
  variant carriers: 1692
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 3.75e1
  variant carriers: 4070
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.5e0
  variant carriers: 1304
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.5e0
  variant carriers: 3325
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 1091
genotype quality: GenotypeQuality
num of homozygotes: 47607
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

11-93466867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466867
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466867
    reference: chr 11
allele count: 2
allele frequency: 1.993699908289804e-5
allele num: 100316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.64C>T
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-282C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-304C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.961C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-304C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-282C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-304C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2148C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-304C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-304C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-304C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-196C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-304C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-304C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-93466875-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466875
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466875
    reference: chr 11
allele count: 1
allele frequency: 1.007841003003366e-5
allele num: 99222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-312C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-312C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-290C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-312C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.56C>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-312C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-312C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-290C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-312C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2140C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.953C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-312C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-204C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-312C>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-93466891-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466891
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466891
    reference: chr 11
allele count: 1
allele frequency: 1.083775875149019e-5
allele num: 92270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-328T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-328T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-328T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.937T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.40T>G
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-328T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2124T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-328T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-306T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-220T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-328T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-306T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-328T>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-328T>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21166
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

11-93466901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466901
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466901
    reference: chr 11
allele count: 1
allele frequency: 1.218769043266301e-5
allele num: 82050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-338C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-338C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-338C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-230C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.927C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2114C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-338C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-316C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.30C>T
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-338C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-338C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-316C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-338C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-338C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

11-93466901-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466901
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466901
    reference: chr 11
allele count: 8
allele frequency: 9.750152346130409e-5
allele num: 82050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.927C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.30C>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-338C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-338C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-316C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-338C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2114C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-230C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-338C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-338C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-338C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-338C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-316C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-338C>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

11-93466905-C-CATTGAGCCCAGGGGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466905
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466921
    reference: chr 11
allele count: 1
allele frequency: 1.284290557895818e-5
allele num: 77864
alternate allele: CATTGAGCCCAGGGGTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

11-93466905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466905
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466905
    reference: chr 11
allele count: 1
allele frequency: 1.284290557895818e-5
allele num: 77864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-342G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.26G>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-342G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-320G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-342G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-320G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-342G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-342G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2110G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-234G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-342G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.923G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-342G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-342G>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/11-93466906-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466906
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466906
    reference: chr 11
allele count: 1
allele frequency: 1.30160878846254e-5
allele num: 76828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.922G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-343G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2109G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-343G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-343G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-235G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-321G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-343G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.25G>T
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-343G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-343G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-343G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-343G>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-321G>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

11-93466909-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466909
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466909
    reference: chr 11
allele count: 422
allele frequency: 5.636436489915854e-3
allele num: 74870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-346T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-324T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-346T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-346T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.22T>C
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-346T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-346T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-324T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.919T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2106T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-346T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-346T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-346T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-238T>C
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: mature miRNA
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 2.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13015
  bin: 2.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 8
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

11-93466912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466912
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466912
    reference: chr 11
allele count: 1
allele frequency: 1.381444438304691e-5
allele num: 72388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-349G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-349G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-349G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.19G>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-349G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-327G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-327G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2103G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.916G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-349G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-349G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-349G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-241G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-349G>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11705
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-93466913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466913
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466913
    reference: chr 11
allele count: 38
allele frequency: 5.267681388449915e-4
allele num: 72138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-350G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-242G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-350G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-328G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-350G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-350G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-350G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2102G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-350G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-350G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.18G>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.915G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-350G>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-328G>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11477
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-93466914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466914
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466914
    reference: chr 11
allele count: 2
allele frequency: 2.798455252700509e-5
allele num: 71468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-351C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-329C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-351C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.17C>T
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-351C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-329C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2101C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-351C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-243C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-351C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-351C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.914C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-351C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-351C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7715
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

11-93466914-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466914
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466914
    reference: chr 11
allele count: 2
allele frequency: 2.798455252700509e-5
allele num: 71468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.914C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-351C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-329C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.17C>A
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-351C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-351C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-329C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-351C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-351C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-351C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2101C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-351C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-351C>A
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-243C>A
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

11-93466914-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466914
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466914
    reference: chr 11
allele count: 1
allele frequency: 1.399227626350255e-5
allele num: 71468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-351C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-243C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2101C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-351C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-351C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-329C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.17C>G
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-329C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-351C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-351C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.914C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-351C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-351C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-351C>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-93466916-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466916
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466916
    reference: chr 11
allele count: 1
allele frequency: 1.43649265952251e-5
allele num: 69614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2099A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-331A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-353A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-353A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-353A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.912A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-353A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.15A>G
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-353A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-353A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-331A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-353A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-353A>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-245A>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

11-93466919-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466919
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466919
    reference: chr 11
allele count: 467
allele frequency: 6.776168780289619e-3
allele num: 68918
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.12C>G
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2096C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-356C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-356C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-356C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-356C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.909C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-334C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-356C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-356C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-334C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-356C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-248C>G
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-356C>G
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8959
  bin: 2.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 1.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 16
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

11-93466923-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466923
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466923
    reference: chr 11
allele count: 4
allele frequency: 5.990714392691328e-5
allele num: 66770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-338T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-360T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-360T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-360T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.905T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-338T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-360T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-360T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2092T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.8T>C
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-360T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-360T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-360T>C
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-252T>C
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14413
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

11-93466925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93466925
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 93466925
    reference: chr 11
allele count: 1
allele frequency: 1.516898246465627e-5
allele num: 65924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000435087
  ensembl transcript: ENST00000526015
  gene symbol: TAF1D
  hgvsc: ENST00000526015.1:c.*57-254C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529794
  gene symbol: TAF1D
  hgvsc: ENST00000529794.1:n.703-362C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530089
  gene symbol: TAF1D
  hgvsc: ENST00000530089.2:n.1196-362C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000376944
  ensembl transcript: ENST00000393259
  gene symbol: TAF1D
  hgvsc: ENST00000393259.2:c.100-362C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000527068
  gene symbol: TAF1D
  hgvsc: ENST00000527068.1:n.931-362C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000314971
  ensembl transcript: ENST00000323981
  gene symbol: TAF1D
  hgvsc: ENST00000323981.2:c.*57-362C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000546088
  gene symbol: TAF1D
  hgvsc: ENST00000546088.1:n.1250-340C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000530769
  gene symbol: TAF1D
  hgvsc: ENST00000530769.1:n.2090C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000525928
  gene symbol: TAF1D
  hgvsc: ENST00000525928.1:n.903C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000446311
  ensembl transcript: ENST00000533794
  gene symbol: TAF1D
  hgvsc: ENST00000533794.1:c.*57-362C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221170
  ensembl transcript: ENST00000408243
  gene symbol: MIR1304
  hgvsc: ENST00000408243.1:n.6C>T
  variant of: http://identifiers.org/hgnc/35302
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000441633
  ensembl transcript: ENST00000540232
  gene symbol: TAF1D
  hgvsc: ENST00000540232.1:c.*57-362C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl transcript: ENST00000529435
  gene symbol: TAF1D
  hgvsc: ENST00000529435.1:n.615-340C>T
  variant of: http://identifiers.org/hgnc/28759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166012
  ensembl protein: ENSP00000433119
  ensembl transcript: ENST00000527169
  gene symbol: TAF1D
  hgvsc: ENST00000527169.1:c.*24-362C>T
  variant of: http://identifiers.org/hgnc/28759
canonical: true
consequence: non coding transcript exon
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13293
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 239
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3765
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2091
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6469
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2387
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3987
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9635
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.628823663550184e-5
allele num: 61394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.388e0

VQSLOD
type: SiteQuality
SIO_000300: -1.933e0

QD
type: SiteQuality
SIO_000300: 5.63e0

DP
type: SiteQuality
SIO_000300: 1.825067e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

GenotypeDepth
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2076
bin: 4.75e1
variant carriers: 18

GenotypeDepth
all individuals: 447
bin: 9.75e1
variant carriers: 194

GenotypeDepth
all individuals: 3747
bin: 4.25e1
variant carriers: 12

GenotypeDepth
all individuals: 21
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 13148
bin: 2.25e1
variant carriers: 3

GenotypeDepth
all individuals: 381
bin: 6.75e1
variant carriers: 51

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10124
bin: 9.75e1
variant carriers: 608

GenotypeQuality
all individuals: 4783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.167509559639817e-4
allele num: 16214
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.104294478527607e-3
allele num: 8150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 53
allele frequency: 8.059610705596108e-3
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

Latino
type: Population
allele count: 76
allele frequency: 6.731620903454384e-3
allele num: 11290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 457
allele frequency: 7.443724142424341e-3
allele num: 61394
num of homozygotes: 3

Other
type: Population
allele count: 6
allele frequency: 7.125890736342043e-3
allele num: 842
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.464e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.858172e6

GenotypeDepth
all individuals: 492
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15351
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 732
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 368
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9953
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.62871754780286e-5
allele num: 61398
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.183e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 2.795e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

DP
type: SiteQuality
SIO_000300: 1.837873e6

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 2.196e1

GenotypeDepth
all individuals: 269
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3801
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1234
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7582
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.62887672660933e-5
allele num: 61392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.983e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: -3.525e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.062e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.838021e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.062e0

QD
type: SiteQuality
SIO_000300: 8.51e0

GenotypeDepth
all individuals: 1234
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 368
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11356
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4789
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.174364040503828e-5
allele num: 16196
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

FS
type: SiteQuality
SIO_000300: 3.101e0

DP
type: SiteQuality
SIO_000300: 1.837475e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.332e0

QD
type: SiteQuality
SIO_000300: 1.131e1

GenotypeDepth
all individuals: 6427
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9954
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.175126590095097e-5
allele num: 16194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

FS
type: SiteQuality
SIO_000300: 3.078e0

DP
type: SiteQuality
SIO_000300: 1.837441e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

QD
type: SiteQuality
SIO_000300: 1.391e1

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

GenotypeDepth
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13058
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 732
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 368
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3796
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9955
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21876
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.187648456057007e-3
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.258602711157456e-5
allele num: 61376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 6.363e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.837617e6

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

GenotypeDepth
all individuals: 492
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 452
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6427
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2130
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 733
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3797
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7569
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9956
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629513753096076e-5
allele num: 61368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.103e0

QD
type: SiteQuality
SIO_000300: 1.314e1

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

DP
type: SiteQuality
SIO_000300: 1.837002e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 201
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6426
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2130
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9957
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1926
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.181233774261343e-5
allele num: 16178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.168e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

DP
type: SiteQuality
SIO_000300: 1.83722e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

GenotypeDepth
all individuals: 492
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15328
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11362
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13039
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9957
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629566861128312e-5
allele num: 61366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 1.83722e6

FS
type: SiteQuality
SIO_000300: 7.168e0

QD
type: SiteQuality
SIO_000300: 1.291e1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeDepth
all individuals: 3796
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12947
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11353
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9957
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7544
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.227897838899803e-4
allele num: 8144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.587e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.141e0

VQSLOD
type: SiteQuality
SIO_000300: -2.381e0

FS
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

DP
type: SiteQuality
SIO_000300: 1.835099e6

MQRankSum
type: SiteQuality
SIO_000300: -2.106e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.233e0

GenotypeDepth
all individuals: 2131
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 733
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6426
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3724
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9957
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1926
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7541
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.228199459592238e-4
allele num: 8142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.271e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.347e0

DP
type: SiteQuality
SIO_000300: 1.835166e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.576e1

VQSLOD
type: SiteQuality
SIO_000300: -4.976e-1

GenotypeDepth
all individuals: 493
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 371
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2130
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 734
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9971
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 3947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3723
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.228501228501228e-4
allele num: 8140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.611306959133046e-4
allele num: 61272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16028
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.163e1

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.832551e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.294e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1239
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9964
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.260956674179814e-5
allele num: 15972
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

FS
type: SiteQuality
SIO_000300: 2.647e0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.858e0

QD
type: SiteQuality
SIO_000300: 1.484e1

MQ
type: SiteQuality
SIO_000300: 6.022e1

DP
type: SiteQuality
SIO_000300: 1.829299e6

GenotypeDepth
all individuals: 12601
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6420
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9964
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.319514661274014e-5
allele num: 15824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61184
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.531e0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.82532e6

MQ
type: SiteQuality
SIO_000300: 6.022e1

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

QD
type: SiteQuality
SIO_000300: 1.484e1

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.229105211406096e-4
allele num: 8136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.824364e6

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

QD
type: SiteQuality
SIO_000300: 1.236e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e0

FS
type: SiteQuality
SIO_000300: 3.487e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.009e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.91e-1

GenotypeDepth
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1239
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9968
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 959
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.662109375e-4
allele num: 8192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.2306177701206e-4
allele num: 8126
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.096e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

DP
type: SiteQuality
SIO_000300: 1.821635e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.215e1

VQSLOD
type: SiteQuality
SIO_000300: 9.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.429e0

GenotypeDepth
all individuals: 11164
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2145
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 14403
bin: 2.75e1
variant carriers: 7

GenotypeDepth
all individuals: 150
bin: 8.75e1
variant carriers: 7

GenotypeDepth
all individuals: 210
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1905
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 6937
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10048
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 3791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.96113775425831e-5
allele num: 60470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.223391240518718e-4
allele num: 8174
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.85638962120161e-4
allele num: 14414
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.984386089425125e-4
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 64
allele frequency: 7.920792079207921e-3
allele num: 8080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.823793e6

MQ
type: SiteQuality
SIO_000300: 6.001e1

QD
type: SiteQuality
SIO_000300: 9.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

FS
type: SiteQuality
SIO_000300: 2.463e0

GenotypeDepth
all individuals: 390
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 331
bin: 9.75e1
variant carriers: 16

GenotypeDepth
all individuals: 1247
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11164
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 506
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 229
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1905
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 298
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6937
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19091
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10048
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 399
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 5

South Asian
type: Population
allele count: 7
allele frequency: 4.85638962120161e-4
allele num: 14414
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 2.351485148514851e-3
allele num: 8080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.922275508516619e-5
allele num: 60470
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.446782481037436e-4
allele num: 8174
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.871540099361249e-5
allele num: 11272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.041362530413625e-4
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

MQ
type: SiteQuality
SIO_000300: 6.001e1

DP
type: SiteQuality
SIO_000300: 1.823793e6

FS
type: SiteQuality
SIO_000300: 2.463e0

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 9.85e0

GenotypeDepth
all individuals: 442
bin: 9.75e1
variant carriers: 106

GenotypeDepth
all individuals: 340
bin: 7.25e1
variant carriers: 6

GenotypeDepth
all individuals: 120
bin: 9.25e1
variant carriers: 10

GenotypeDepth
all individuals: 150
bin: 8.75e1
variant carriers: 7

GenotypeDepth
all individuals: 751
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10061
bin: 9.75e1
variant carriers: 161

GenotypeQuality
all individuals: 3664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 27
allele frequency: 2.399573409171703e-3
allele num: 11252
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.312245371137094e-5
allele num: 60382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

African
type: Population
allele count: 134
allele frequency: 1.694486595852301e-2
allele num: 7908
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

QD
type: SiteQuality
SIO_000300: 1.261e1

DP
type: SiteQuality
SIO_000300: 1.836925e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13223
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18059
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10061
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6838
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.898380494749955e-5
allele num: 11238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60112
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 8.928000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -8.563e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.770739e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10747
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10062
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.663616702711695e-5
allele num: 60110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13408
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 1.770541e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.509e0

FS
type: SiteQuality
SIO_000300: 9.093999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.195e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeDepth
all individuals: 1254
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10747
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2154
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3805
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 761
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10062
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.247193813918683e-4
allele num: 8018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.093999999999999e0

QD
type: SiteQuality
SIO_000300: 1.14e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.509e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

DP
type: SiteQuality
SIO_000300: 1.770541e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.195e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

GenotypeDepth
all individuals: 598
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10062
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.225490196078431e-4
allele num: 8160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 1.462e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.133e0

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

DP
type: SiteQuality
SIO_000300: 1.767447e6

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 761
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2155
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10922
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10062
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17936
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.901548869503294e-5
allele num: 11234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.102e0

DP
type: SiteQuality
SIO_000300: 1.767281e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.04e-1

FS
type: SiteQuality
SIO_000300: 3.496e0

QD
type: SiteQuality
SIO_000300: 1.263e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeDepth
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 514
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10837
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 761
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10065
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.666000066660001e-5
allele num: 60006
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.053e0

DP
type: SiteQuality
SIO_000300: 1.764321e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

FS
type: SiteQuality
SIO_000300: 3.197e0

MQ
type: SiteQuality
SIO_000300: 5.772e1

QD
type: SiteQuality
SIO_000300: 9.73e0

GenotypeDepth
all individuals: 2434
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 387
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2510
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3802
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10707
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10065
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3766
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4645
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.25344697919278e-4
allele num: 7978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

DP
type: SiteQuality
SIO_000300: 1.757954e6

QD
type: SiteQuality
SIO_000300: 9.68e0

GenotypeDepth
all individuals: 351
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10065
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3766
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.342692873378794e-5
allele num: 59832
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

DP
type: SiteQuality
SIO_000300: 1.757954e6

GenotypeDepth
all individuals: 10702
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6373
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3766
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6773
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10066
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59846
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.907892392659897e-5
allele num: 11226
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.757637e6

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

GenotypeDepth
all individuals: 774
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3802
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 762
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10067
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.673808248527049e-5
allele num: 59744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12350
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.755432e6

QD
type: SiteQuality
SIO_000300: 1.574e1

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 4.775e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

GenotypeDepth
all individuals: 6374
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 388
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10607
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10067
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59744
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.228501228501228e-4
allele num: 8140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.574e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 1.755432e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 4.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeDepth
all individuals: 10582
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2157
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6768
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10065
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17397
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.348289024308578e-5
allele num: 59732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12340
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.754481e6

FS
type: SiteQuality
SIO_000300: 5.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

GenotypeDepth
all individuals: 204
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 387
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 762
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10066
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6763
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.226390259953932e-5
allele num: 12156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.607e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 1.75201e6

GenotypeDepth
all individuals: 762
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6373
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1255
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 516
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10071
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.676659528907923e-4
allele num: 11208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.361457527984134e-5
allele num: 59498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11648
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

FS
type: SiteQuality
SIO_000300: 4.689e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.747578e6

GenotypeDepth
all individuals: 273
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3803
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10681
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1255
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10071
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.680728763992067e-5
allele num: 59498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.366e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 4.689e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 1.747578e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6373
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 761
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10072
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 405
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3931
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17138
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.043712172158709e-5
allele num: 59480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.231527093596059e-4
allele num: 8120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.75e-1

QD
type: SiteQuality
SIO_000300: 1.246e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

DP
type: SiteQuality
SIO_000300: 1.74655e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.632e0

GenotypeDepth
all individuals: 100
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 271
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3805
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10077
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.678571428571429e-4
allele num: 11200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.46e1

FS
type: SiteQuality
SIO_000300: 3.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.034e0

DP
type: SiteQuality
SIO_000300: 1.740927e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10252
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 100
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10082
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6745
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.17741536940944e-4
allele num: 8094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

DP
type: SiteQuality
SIO_000300: 1.73715e6

FS
type: SiteQuality
SIO_000300: 3.461e0

QD
type: SiteQuality
SIO_000300: 1.23e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.24e-1

GenotypeDepth
all individuals: 261
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2160
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1258
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10081
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.734342e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 1.722e1

GenotypeDepth
all individuals: 406
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2166
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1264
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10100
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6716
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58822
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.555583950932788e-4
allele num: 7826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.733e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.318e0

DP
type: SiteQuality
SIO_000300: 1.729482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.238e1

GenotypeDepth
all individuals: 262
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2167
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 401
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10094
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 872
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6686
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.404718940451466e-5
allele num: 58742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.728109e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.718e0

FS
type: SiteQuality
SIO_000300: 2.491e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeDepth
all individuals: 3803
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10089
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12526
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.702707304614337e-5
allele num: 58730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.773e0

DP
type: SiteQuality
SIO_000300: 1.72835e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.406e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.379999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeDepth
all individuals: 1262
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3807
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 401
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10633
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3681
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.027749229188078e-4
allele num: 9730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58706
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

DP
type: SiteQuality
SIO_000300: 1.728131e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.73e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.204e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

GenotypeDepth
all individuals: 12531
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6381
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 390
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1262
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58706
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.240079365079365e-4
allele num: 8064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.058e1

DP
type: SiteQuality
SIO_000300: 1.728131e6

FS
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.204e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.73e-1

GenotypeDepth
all individuals: 3285
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 390
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10633
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 398
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3809
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16108
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10113
bin: 9.75e1
variant carriers: 12

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.520681265206813e-4
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.790189760114572e-4
allele num: 11172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.533115290269828e-4
allele num: 58704
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.728464e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

QD
type: SiteQuality
SIO_000300: 1.434e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 2.263e0

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.525e0

GenotypeDepth
all individuals: 1267
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10663
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3323
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 391
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10120
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.954154727793696e-5
allele num: 11168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.115961800818554e-5
allele num: 58640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 1.729267e6

QD
type: SiteQuality
SIO_000300: 3.292e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeDepth
all individuals: 1787
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1107
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2172
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6614
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3689
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15348
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.044495508669313e-4
allele num: 9574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

DP
type: SiteQuality
SIO_000300: 1.730478e6

FS
type: SiteQuality
SIO_000300: 1.849e0

VQSLOD
type: SiteQuality
SIO_000300: -1.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 4.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.639e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

GenotypeDepth
all individuals: 697
bin: 8.75e1
variant carriers: 697

GenotypeDepth
all individuals: 1451
bin: 9.75e1
variant carriers: 1451

GenotypeDepth
all individuals: 1109
bin: 8.25e1
variant carriers: 1109

GenotypeDepth
all individuals: 461
bin: 9.25e1
variant carriers: 461

GenotypeDepth
all individuals: 4873
bin: 6.25e1
variant carriers: 4873

GenotypeDepth
all individuals: 6355
bin: 4.75e1
variant carriers: 6352

GenotypeDepth
all individuals: 5901
bin: 5.75e1
variant carriers: 5901

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 88

GenotypeQuality
all individuals: 594
bin: 8.25e1
variant carriers: 594

GenotypeQuality
all individuals: 597
bin: 3.25e1
variant carriers: 595

GenotypeQuality
all individuals: 1517
bin: 1.75e1
variant carriers: 1515

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 736
bin: 1.25e1
variant carriers: 734

GenotypeQuality
all individuals: 330
bin: 6.75e1
variant carriers: 279

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 173

GenotypeQuality
all individuals: 592
bin: 7.5e0
variant carriers: 562

GenotypeQuality
all individuals: 1295
bin: 2.25e1
variant carriers: 1258

GenotypeQuality
all individuals: 172
bin: 7.25e1
variant carriers: 163

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 860

GenotypeQuality
all individuals: 415
bin: 7.75e1
variant carriers: 409

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 108

GenotypeQuality
all individuals: 46666
bin: 9.75e1
variant carriers: 46664

GenotypeQuality
all individuals: 465
bin: 2.75e1
variant carriers: 463

GenotypeQuality
all individuals: 331
bin: 3.75e1
variant carriers: 330

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 389

GenotypeQuality
all individuals: 190
bin: 4.75e1
variant carriers: 187

GenotypeQuality
all individuals: 482
bin: 6.25e1
variant carriers: 213

Other
type: Population
allele count: 705
allele frequency: 9.631147540983607e-1
allele num: 732
num of homozygotes: 339

African
type: Population
allele count: 5381
allele frequency: 6.921790583997942e-1
allele num: 7774
num of homozygotes: 1835

European (Non-Finnish)
type: Population
allele count: 58075
allele frequency: 9.892178238059549e-1
allele num: 58708
num of homozygotes: 28725

European (Finnish)
type: Population
allele count: 6566
allele frequency: 9.993911719939117e-1
allele num: 6570
num of homozygotes: 3281

South Asian
type: Population
allele count: 9489
allele frequency: 9.831123083298798e-1
allele num: 9652
num of homozygotes: 4665

East Asian
type: Population
allele count: 7527
allele frequency: 9.352634194831014e-1
allele num: 8048
num of homozygotes: 3520

Latino
type: Population
allele count: 10819
allele frequency: 9.685765443151299e-1
allele num: 11170
num of homozygotes: 5242

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.619e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 2.756832e6

QD
type: SiteQuality
SIO_000300: 3.475e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

GenotypeDepth
all individuals: 2504
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2350
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25199
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.468729404419161e-5
allele num: 57658
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.463e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.08e-1

DP
type: SiteQuality
SIO_000300: 1.417967e6

QD
type: SiteQuality
SIO_000300: 1.518e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4085
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11276
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.754693805930865e-5
allele num: 56990
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

FS
type: SiteQuality
SIO_000300: 2.586e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.606e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 8.66e0

DP
type: SiteQuality
SIO_000300: 1.376962e6

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 341
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5548
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.905633051299642e-5
allele num: 52476
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.565e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.237189e6

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 7354
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7078
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7098
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 968
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6225
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.162629757785467e-5
allele num: 46240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

VQSLOD
type: SiteQuality
SIO_000300: -1.906e0

DP
type: SiteQuality
SIO_000300: 1.088938e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

QD
type: SiteQuality
SIO_000300: 4.15e0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17295
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 905
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 492
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6225
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 495
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 3.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.532332209623046e-4
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.758705592683785e-4
allele num: 5686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.29757785467128e-4
allele num: 46240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 4.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.906e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.088938e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 579
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.293157218858925e-5
allele num: 43608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

QD
type: SiteQuality
SIO_000300: 7.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

MQRankSum
type: SiteQuality
SIO_000300: -2.22e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.77776e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

GenotypeDepth
all individuals: 9482
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4856
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.750700280112045e-4
allele num: 5712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 9.77776e5

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

QD
type: SiteQuality
SIO_000300: 7.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.22e0

GenotypeDepth
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2621
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42920
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.677852348993289e-4
allele num: 5960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.62e0

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.179e0

DP
type: SiteQuality
SIO_000300: 9.58231e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10292
bin: 7.5e0
variant carriers: 13

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10736
bin: 1.25e1
variant carriers: 63

GenotypeQuality
all individuals: 514
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 724
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2483
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 6034
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 513
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 363
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1765
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 17591
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 286
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1829
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 824
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 374
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 533
bin: 9.75e1
variant carriers: 358

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 443
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 18334
bin: 6.25e1
variant carriers: 7

African
type: Population
allele count: 83
allele frequency: 1.478446740292127e-2
allele num: 5614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 9.779951100244498e-4
allele num: 8180
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.473453749315818e-4
allele num: 7308
num of homozygotes: 0

East Asian
type: Population
allele count: 323
allele frequency: 5.712769720551822e-2
allele num: 5654
num of homozygotes: 8

Other
type: Population
allele count: 2
allele frequency: 3.53356890459364e-3
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.78102887741442e-5
allele num: 41832
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 9.15869e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.08e0

GenotypeDepth
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2632
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6000
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.479543763947434e-5
allele num: 40330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.451e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 8.66419e5

QD
type: SiteQuality
SIO_000300: 1.819e1

GenotypeDepth
all individuals: 7561
bin: 2.25e1
variant carriers: 10

GenotypeDepth
all individuals: 11683
bin: 1.25e1
variant carriers: 4

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19234
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 449
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6062
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 390
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

South Asian
type: Population
allele count: 38
allele frequency: 5.335579893288402e-3
allele num: 7122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40202
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 8.64786e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

QD
type: SiteQuality
SIO_000300: 1.448e1

GenotypeDepth
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6323
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1050
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6058
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.893222264293828e-4
allele num: 5282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.512941649494899e-5
allele num: 39794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.51476e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

QD
type: SiteQuality
SIO_000300: 1.278e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2561
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11084
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6058
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.832058906825262e-4
allele num: 7062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.51476e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

GenotypeDepth
all individuals: 7715
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11549
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6058
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1913
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.288659793814433e-4
allele num: 7760
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

DP
type: SiteQuality
SIO_000300: 8.51476e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

QD
type: SiteQuality
SIO_000300: 1.278e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

GenotypeDepth
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6071
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.944768572539868e-4
allele num: 5142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.484e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.10449e5

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 5.75e1
variant carriers: 3

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7885
bin: 2.25e1
variant carriers: 117

GenotypeDepth
all individuals: 12508
bin: 7.5e0
variant carriers: 28

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 623
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21569
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 411
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1031
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1987
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2170
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 525
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 306
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 6171
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 14619
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 582
bin: 9.75e1
variant carriers: 420

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 281
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 1.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.565353509000783e-4
allele num: 38330
num of homozygotes: 0

African
type: Population
allele count: 436
allele frequency: 8.307926829268293e-2
allele num: 5248
num of homozygotes: 16

South Asian
type: Population
allele count: 2
allele frequency: 2.905287623474724e-4
allele num: 6884
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 3.108948364422817e-3
allele num: 7398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5058
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

QD
type: SiteQuality
SIO_000300: 1.709e1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

DP
type: SiteQuality
SIO_000300: 8.00932e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

GenotypeDepth
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2465
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6762
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 8.149959250203749e-4
allele num: 4908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

DP
type: SiteQuality
SIO_000300: 7.59422e5

VQSLOD
type: SiteQuality
SIO_000300: -2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2