http://identifiers.org/exac.variant/10-123659504-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659504
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659504
    reference: chr 10
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.819G>T
  hgvsp: ENSP00000224652.6:p.Arg273Ser
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.808G>T
  hgvsp: ENSP00000397787.1:p.Arg270Ser
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2402G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.474G>T
  hgvsp: ENSP00000444852.1:p.Arg158Ser
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-79G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1020G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1020G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1020G>T
  variant of: http://identifiers.org/hgnc/782
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10298
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg158Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

10-123659505-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659505
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659505
    reference: chr 10
allele count: 4
allele frequency: 3.300602359930687e-5
allele num: 121190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1021G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1021G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2401G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.807G>A
  hgvsp: ENSP00000397787.1:p.Arg270Lys
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.473G>A
  hgvsp: ENSP00000444852.1:p.Arg158Lys
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1021G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.818G>A
  hgvsp: ENSP00000224652.6:p.Arg273Lys
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-80G>A
  variant of: http://identifiers.org/hgnc/782
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15855
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg158Lys
num of homozygotes: 1
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

10-123659511-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659511
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659511
    reference: chr 10
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2395A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1027A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.469-2A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.814-2A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.803-2A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1027A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1027A>C
  variant of: http://identifiers.org/hgnc/782
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: c.-84-2A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

10-123659512-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659512
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659512
    reference: chr 10
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1028A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.469-3A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.803-3A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.814-3A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2394A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-3A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1028A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1028A>G
  variant of: http://identifiers.org/hgnc/782
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
hgvs: c.-84-3A>G
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

10-123659515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659515
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659515
    reference: chr 10
allele count: 1
allele frequency: 8.269656974628692e-6
allele num: 120924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2391C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-6C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.803-6C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.469-6C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.814-6C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1031C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1031C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1031C>T
  variant of: http://identifiers.org/hgnc/782
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.-84-6C>T
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

10-123659521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659521
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659521
    reference: chr 10
allele count: 12
allele frequency: 9.937229831563955e-5
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-12C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.469-12C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2385C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.803-12C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1037C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1037C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1037C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.814-12C>T
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24751
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31692
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

10-123659523-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659523
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659524
    reference: chr 10
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-15dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.469-15dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.803-15dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1040dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1040dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.814-15dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1040dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2382dupT
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-123659532-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659532
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659532
    reference: chr 10
allele count: 4
allele frequency: 3.323363243602526e-5
allele num: 120360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.814-23T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1048T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-23T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.469-23T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1048T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.803-23T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2374T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1048T>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14402
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

10-123659546-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659546
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659546
    reference: chr 10
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.803-37T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1062T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.814-37T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-37T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.469-37T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1062T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1062T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2360T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

10-123659555-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123659555
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123659555
    reference: chr 10
allele count: 1
allele frequency: 8.38335401227323e-6
allele num: 119284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.526-1071A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.793-1071A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.469-46A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+2351A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.803-46A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-46A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.814-1071A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.814-46A>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6058
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/10-123661859-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661859
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661860
    reference: chr 10
allele count: 653
allele frequency: 6.651997636656276e-3
allele num: 98166
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+46dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2351dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+46dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+46dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+46dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+46dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+46dupT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+46dupT
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 1.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 2.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 3.25e1
  variant carriers: 9
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/10-123661859-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661859
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661859
    reference: chr 10
allele count: 1
allele frequency: 1.018682639610456e-5
allele num: 98166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+47G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+47G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+47G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+47G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+47G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+47G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2350G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+47G>T
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/10-123661859-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661859
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661858
    reference: chr 10
allele count: 163
allele frequency: 1.660452702565043e-3
allele num: 98166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+46delT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+46delT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+46delT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+46delT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+46delT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+46delT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2351delT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+46delT
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 2.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 2.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 2.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 3.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 1.75e1
  variant carriers: 23
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: CA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/10-123661859-CAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661859
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661856
    reference: chr 10
allele count: 1
allele frequency: 1.018682639610456e-5
allele num: 98166
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6830
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9490
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 742
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8622
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CAAA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

10-123661866-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661866
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661866
    reference: chr 10
allele count: 1
allele frequency: 8.518177791406862e-6
allele num: 117396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+40T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+40T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+40T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+40T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2357T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+40T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+40T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+40T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-123661867-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661867
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661867
    reference: chr 10
allele count: 22
allele frequency: 1.87294614428496e-4
allele num: 117462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2358T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+39T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+39T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+39T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+39T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+39T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+39T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+39T>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23481
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19267
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

10-123661868-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661868
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661867
    reference: chr 10
allele count: 1
allele frequency: 8.506584096090374e-6
allele num: 117556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2360delA
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+37delA
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+37delA
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+37delA
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+37delA
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+37delA
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+37delA
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+37delA
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19379
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1931
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: AT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

10-123661872-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661872
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661872
    reference: chr 10
allele count: 4
allele frequency: 3.397027600849257e-5
allele num: 117750
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+34A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+34A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+34A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2363A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+34A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+34A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+34A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+34A>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25908
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

10-123661875-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661875
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661875
    reference: chr 10
allele count: 3
allele frequency: 2.537384126124907e-5
allele num: 118232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+31A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+31A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+31A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+31A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+31A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+31A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+31A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2366A>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 44953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

10-123661878-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661878
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661878
    reference: chr 10
allele count: 1
allele frequency: 8.415241685741214e-6
allele num: 118832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+28T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+28T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2369T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+28T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+28T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+28T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+28T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+28T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

10-123661888-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661888
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661888
    reference: chr 10
allele count: 1
allele frequency: 8.300132802124834e-6
allele num: 120480
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+18T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+18T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+18T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+18T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+18T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+18T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2379T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+18T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

10-123661893-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661893
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661893
    reference: chr 10
allele count: 2
allele frequency: 1.655108492361674e-5
allele num: 120838
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813+13A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148+13A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792+13A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2384A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525+13A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813+13A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802+13A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468+13A>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5511
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

10-123661906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661906
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661906
    reference: chr 10
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.813G>A
  hgvsp: ENST00000369043.3:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.525G>A
  hgvsp: ENST00000369040.3:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.813G>A
  hgvsp: ENST00000224652.6:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.792G>A
  hgvsp: ENST00000540606.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2397G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.148G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.468G>A
  hgvsp: ENST00000543447.1:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.802G>A
  hgvsp: ENST00000423243.1:c.802G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
hgvs: c.813G>A
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

10-123661913-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661913
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661913
    reference: chr 10
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.141A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.806A>G
  hgvsp: ENSP00000358039.3:p.Lys269Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.806A>G
  hgvsp: ENSP00000224652.6:p.Lys269Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.795A>G
  hgvsp: ENSP00000397787.1:p.Lys266Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.461A>G
  hgvsp: ENSP00000444852.1:p.Lys154Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.785A>G
  hgvsp: ENSP00000440881.1:p.Lys262Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.518A>G
  hgvsp: ENSP00000358036.3:p.Lys173Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2404A>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys269Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-123661913-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661913
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661913
    reference: chr 10
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.795A>C
  hgvsp: ENSP00000397787.1:p.Lys266Thr
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2404A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.518A>C
  hgvsp: ENSP00000358036.3:p.Lys173Thr
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.141A>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.806A>C
  hgvsp: ENSP00000224652.6:p.Lys269Thr
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.785A>C
  hgvsp: ENSP00000440881.1:p.Lys262Thr
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.806A>C
  hgvsp: ENSP00000358039.3:p.Lys269Thr
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.461A>C
  hgvsp: ENSP00000444852.1:p.Lys154Thr
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys269Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

10-123661919-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661919
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661918
    reference: chr 10
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.778delT
  hgvsp: ENSP00000440881.1:p.Ser260HisfsTer4
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.799delT
  hgvsp: ENSP00000358039.3:p.Ser267HisfsTer4
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.454delT
  hgvsp: ENSP00000444852.1:p.Ser152HisfsTer4
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.511delT
  hgvsp: ENSP00000358036.3:p.Ser171HisfsTer4
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.788delT
  hgvsp: ENSP00000397787.1:p.Ser264HisfsTer4
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.799delT
  hgvsp: ENSP00000224652.6:p.Ser267HisfsTer4
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.134delT
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2411delT
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50751
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser267HisfsTer4
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: GA
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-123661932-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661932
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661932
    reference: chr 10
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.776C>G
  hgvsp: ENSP00000397787.1:p.Pro260Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.499C>G
  hgvsp: ENSP00000358036.3:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.787C>G
  hgvsp: ENSP00000358039.3:p.Pro263Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.766C>G
  hgvsp: ENSP00000440881.1:p.Pro256Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.442C>G
  hgvsp: ENSP00000444852.1:p.Pro148Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.122C>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.787C>G
  hgvsp: ENSP00000224652.6:p.Pro263Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2423C>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50769
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro263Ala
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/10-123661942-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661942
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661942
    reference: chr 10
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.432T>G
  hgvsp: ENSP00000444852.1:p.Phe144Leu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.756T>G
  hgvsp: ENSP00000440881.1:p.Phe252Leu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.766T>G
  hgvsp: ENSP00000397787.1:p.Phe256Leu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.777T>G
  hgvsp: ENSP00000358039.3:p.Phe259Leu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.489T>G
  hgvsp: ENSP00000358036.3:p.Phe163Leu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.777T>G
  hgvsp: ENSP00000224652.6:p.Phe259Leu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2433T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.112T>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe259Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

10-123661951-ATCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661951
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661948
    reference: chr 10
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.744_746delAGA
  hgvsp: ENSP00000440881.1:p.Glu248del
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.100_102delAGA
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.420_422delAGA
  hgvsp: ENSP00000444852.1:p.Glu140del
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.477_479delAGA
  hgvsp: ENSP00000358036.3:p.Glu159del
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.765_767delAGA
  hgvsp: ENSP00000358039.3:p.Glu255del
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.754_756delAGA
  hgvsp: ENSP00000397787.1:p.Glu252del
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.765_767delAGA
  hgvsp: ENSP00000224652.6:p.Glu255del
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2445_-84-2443delAGA
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 30891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu255del
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: ATCT
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

10-123661957-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661957
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661957
    reference: chr 10
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2448C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.741C>T
  hgvsp: ENST00000540606.1:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.762C>T
  hgvsp: ENST00000369043.3:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.97C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.417C>T
  hgvsp: ENST00000543447.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.474C>T
  hgvsp: ENST00000369040.3:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.762C>T
  hgvsp: ENST00000224652.6:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.751C>T
  hgvsp: ENST00000423243.1:c.751C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu254Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

10-123661957-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661957
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661957
    reference: chr 10
allele count: 8
allele frequency: 6.589568712727751e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.417C>G
  hgvsp: ENST00000543447.1:c.417C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.474C>G
  hgvsp: ENST00000369040.3:c.474C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.762C>G
  hgvsp: ENST00000224652.6:c.762C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.751C>G
  hgvsp: ENST00000423243.1:c.751C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.762C>G
  hgvsp: ENST00000369043.3:c.762C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2448C>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.741C>G
  hgvsp: ENST00000540606.1:c.741C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.97C>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu254Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

10-123661960-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661960
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661960
    reference: chr 10
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2451A>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.738A>T
  hgvsp: ENST00000540606.1:c.738A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.94A>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.748A>T
  hgvsp: ENST00000423243.1:c.748A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.759A>T
  hgvsp: ENST00000369043.3:c.759A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.759A>T
  hgvsp: ENST00000224652.6:c.759A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.471A>T
  hgvsp: ENST00000369040.3:c.471A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.414A>T
  hgvsp: ENST00000543447.1:c.414A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser253Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

10-123661967-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661967
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661967
    reference: chr 10
allele count: 5
allele frequency: 4.118412599047823e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2458C>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.464C>G
  hgvsp: ENSP00000358036.3:p.Pro155Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.752C>G
  hgvsp: ENSP00000358039.3:p.Pro251Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.752C>G
  hgvsp: ENSP00000224652.6:p.Pro251Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.407C>G
  hgvsp: ENSP00000444852.1:p.Pro136Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.741C>G
  hgvsp: ENSP00000397787.1:p.Pro248Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.731C>G
  hgvsp: ENSP00000440881.1:p.Pro244Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.87C>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro251Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

10-123661967-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661967
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661967
    reference: chr 10
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.87C>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2458C>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.731C>A
  hgvsp: ENSP00000440881.1:p.Pro244Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.752C>A
  hgvsp: ENSP00000358039.3:p.Pro251Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.464C>A
  hgvsp: ENSP00000358036.3:p.Pro155Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.752C>A
  hgvsp: ENSP00000224652.6:p.Pro251Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.741C>A
  hgvsp: ENSP00000397787.1:p.Pro248Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.407C>A
  hgvsp: ENSP00000444852.1:p.Pro136Gln
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro251Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-123661971-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661971
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661971
    reference: chr 10
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.748C>A
  hgvsp: ENSP00000358039.3:p.Gln250Lys
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.460C>A
  hgvsp: ENSP00000358036.3:p.Gln154Lys
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2462C>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.727C>A
  hgvsp: ENSP00000440881.1:p.Gln243Lys
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.83C>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.748C>A
  hgvsp: ENSP00000224652.6:p.Gln250Lys
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.403C>A
  hgvsp: ENSP00000444852.1:p.Gln135Lys
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.737C>A
  hgvsp: ENSP00000397787.1:p.Gln247Lys
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln250Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-123661973-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661973
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661973
    reference: chr 10
allele count: 8
allele frequency: 6.589460158476517e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.746A>T
  hgvsp: ENSP00000358039.3:p.Asn249Ile
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.746A>T
  hgvsp: ENSP00000224652.6:p.Asn249Ile
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2464A>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.401A>T
  hgvsp: ENSP00000444852.1:p.Asn134Ile
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.458A>T
  hgvsp: ENSP00000358036.3:p.Asn153Ile
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.81A>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.735A>T
  hgvsp: ENSP00000397787.1:p.Asn246Ile
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.725A>T
  hgvsp: ENSP00000440881.1:p.Asn242Ile
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn249Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/10-123661983-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661983
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661983
    reference: chr 10
allele count: 20
allele frequency: 1.647365039619129e-4
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.71G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.725G>T
  hgvsp: ENSP00000397787.1:p.Ala243Ser
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.736G>T
  hgvsp: ENSP00000358039.3:p.Ala246Ser
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.448G>T
  hgvsp: ENSP00000358036.3:p.Ala150Ser
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.736G>T
  hgvsp: ENSP00000224652.6:p.Ala246Ser
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.715G>T
  hgvsp: ENSP00000440881.1:p.Ala239Ser
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2474G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.391G>T
  hgvsp: ENSP00000444852.1:p.Ala131Ser
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala246Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

10-123661983-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661983
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661983
    reference: chr 10
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.391G>C
  hgvsp: ENSP00000444852.1:p.Ala131Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.715G>C
  hgvsp: ENSP00000440881.1:p.Ala239Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.725G>C
  hgvsp: ENSP00000397787.1:p.Ala243Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.736G>C
  hgvsp: ENSP00000224652.6:p.Ala246Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.736G>C
  hgvsp: ENSP00000358039.3:p.Ala246Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2474G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.71G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.448G>C
  hgvsp: ENSP00000358036.3:p.Ala150Pro
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5578
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala246Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

10-123661984-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661984
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661984
    reference: chr 10
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.735G>C
  hgvsp: ENSP00000358039.3:p.Lys245Asn
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2475G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.714G>C
  hgvsp: ENSP00000440881.1:p.Lys238Asn
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.70G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.447G>C
  hgvsp: ENSP00000358036.3:p.Lys149Asn
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.390G>C
  hgvsp: ENSP00000444852.1:p.Lys130Asn
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.724G>C
  hgvsp: ENSP00000397787.1:p.Lys242Asn
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.735G>C
  hgvsp: ENSP00000224652.6:p.Lys245Asn
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys245Asn
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

10-123661996-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123661996
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123661996
    reference: chr 10
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.723G>C
  hgvsp: ENSP00000224652.6:p.Leu241Phe
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.435G>C
  hgvsp: ENSP00000358036.3:p.Leu145Phe
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.723G>C
  hgvsp: ENSP00000358039.3:p.Leu241Phe
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2487G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.378G>C
  hgvsp: ENSP00000444852.1:p.Leu126Phe
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.58G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.702G>C
  hgvsp: ENSP00000440881.1:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.712G>C
  hgvsp: ENSP00000397787.1:p.Leu238Phe
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5578
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu241Phe
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

10-123662001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662001
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662001
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.718T>C
  hgvsp: ENSP00000224652.6:p.Ser240Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2492T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.373T>C
  hgvsp: ENSP00000444852.1:p.Ser125Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.430T>C
  hgvsp: ENSP00000358036.3:p.Ser144Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.697T>C
  hgvsp: ENSP00000440881.1:p.Ser233Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.707T>C
  hgvsp: ENSP00000397787.1:p.Ser237Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.718T>C
  hgvsp: ENSP00000358039.3:p.Ser240Pro
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.53T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser240Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

10-123662002-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662002
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662002
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.372A>G
  hgvsp: ENST00000543447.1:c.372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.706A>G
  hgvsp: ENST00000423243.1:c.706A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.696A>G
  hgvsp: ENST00000540606.1:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.429A>G
  hgvsp: ENST00000369040.3:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.717A>G
  hgvsp: ENST00000369043.3:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2493A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.52A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.717A>G
  hgvsp: ENST00000224652.6:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro239Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

10-123662020-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662020
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662020
    reference: chr 10
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.688G>C
  hgvsp: ENSP00000397787.1:p.Gln230His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.678G>C
  hgvsp: ENSP00000440881.1:p.Gln226His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2511G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.411G>C
  hgvsp: ENSP00000358036.3:p.Gln137His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.699G>C
  hgvsp: ENSP00000358039.3:p.Gln233His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.354G>C
  hgvsp: ENSP00000444852.1:p.Gln118His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.699G>C
  hgvsp: ENSP00000224652.6:p.Gln233His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.34G>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln233His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

10-123662039-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662039
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662039
    reference: chr 10
allele count: 9
allele frequency: 7.417541661859001e-5
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2530G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.680G>A
  hgvsp: ENSP00000224652.6:p.Gly227Glu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.392G>A
  hgvsp: ENSP00000358036.3:p.Gly131Glu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.659G>A
  hgvsp: ENSP00000440881.1:p.Gly220Glu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.15G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.680G>A
  hgvsp: ENSP00000358039.3:p.Gly227Glu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.669G>A
  hgvsp: ENSP00000397787.1:p.Gly224Glu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.335G>A
  hgvsp: ENSP00000444852.1:p.Gly112Glu
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.659G>A
  hgvsp: ENSP00000405099.1:p.Gly220Glu
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly227Glu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

10-123662045-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662045
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662045
    reference: chr 10
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.653C>G
  hgvsp: ENSP00000405099.1:p.Pro218Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.674C>G
  hgvsp: ENSP00000224652.6:p.Pro225Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.386C>G
  hgvsp: ENSP00000358036.3:p.Pro129Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2536C>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.329C>G
  hgvsp: ENSP00000444852.1:p.Pro110Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.653C>G
  hgvsp: ENSP00000440881.1:p.Pro218Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.9C>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.674C>G
  hgvsp: ENSP00000358039.3:p.Pro225Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.663C>G
  hgvsp: ENSP00000397787.1:p.Pro222Arg
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro225Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

10-123662046-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662046
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662046
    reference: chr 10
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.673C>G
  hgvsp: ENSP00000224652.6:p.Pro225Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.385C>G
  hgvsp: ENSP00000358036.3:p.Pro129Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2537C>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.652C>G
  hgvsp: ENSP00000405099.1:p.Pro218Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.673C>G
  hgvsp: ENSP00000358039.3:p.Pro225Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.652C>G
  hgvsp: ENSP00000440881.1:p.Pro218Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.8C>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.328C>G
  hgvsp: ENSP00000444852.1:p.Pro110Ala
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.662C>G
  hgvsp: ENSP00000397787.1:p.Pro222Ala
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro225Ala
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

10-123662053-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662053
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662053
    reference: chr 10
allele count: 2
allele frequency: 1.652537471287161e-5
allele num: 121026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.645G>C
  hgvsp: ENSP00000405099.1:p.Gln215His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.321G>C
  hgvsp: ENSP00000444852.1:p.Gln107His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.645G>C
  hgvsp: ENSP00000440881.1:p.Gln215His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.666G>C
  hgvsp: ENSP00000358039.3:p.Gln222His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.666G>C
  hgvsp: ENSP00000224652.6:p.Gln222His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.378G>C
  hgvsp: ENSP00000358036.3:p.Gln126His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107669
  ensembl transcript: ENST00000481784
  gene symbol: ATE1
  hgvsc: ENST00000481784.1:n.1G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.655G>C
  hgvsp: ENSP00000397787.1:p.Gln219His
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2544G>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln222His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-123662055-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662055
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662056
    reference: chr 10
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.642dupG
  hgvsp: ENSP00000440881.1:p.Gln215AlafsTer9
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.663dupG
  hgvsp: ENSP00000358039.3:p.Gln222AlafsTer9
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.375dupG
  hgvsp: ENSP00000358036.3:p.Gln126AlafsTer9
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2547dupG
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.318dupG
  hgvsp: ENSP00000444852.1:p.Gln107AlafsTer9
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.642dupG
  hgvsp: ENSP00000405099.1:p.Gln215AlafsTer?
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.663dupG
  hgvsp: ENSP00000224652.6:p.Gln222AlafsTer9
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.652dupG
  hgvsp: ENSP00000397787.1:p.Gln219AlafsTer9
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln222AlafsTer9
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

10-123662061-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662061
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662061
    reference: chr 10
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.658C>T
  hgvsp: ENST00000224652.6:c.658C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.647C>T
  hgvsp: ENST00000423243.1:c.647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.313C>T
  hgvsp: ENST00000543447.1:c.313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.637C>T
  hgvsp: ENST00000455628.1:c.637C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.658C>T
  hgvsp: ENST00000369043.3:c.658C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.637C>T
  hgvsp: ENST00000540606.1:c.637C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.370C>T
  hgvsp: ENST00000369040.3:c.370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2552C>T
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5491
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu220Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

10-123662071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662071
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662071
    reference: chr 10
allele count: 1
allele frequency: 8.506149946411256e-6
allele num: 117562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.627A>G
  hgvsp: ENST00000455628.1:c.627A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.627A>G
  hgvsp: ENST00000540606.1:c.627A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.360A>G
  hgvsp: ENST00000369040.3:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2562A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.648A>G
  hgvsp: ENST00000369043.3:c.648A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.303A>G
  hgvsp: ENST00000543447.1:c.303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.637A>G
  hgvsp: ENST00000423243.1:c.637A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.648A>G
  hgvsp: ENST00000224652.6:c.648A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys216Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

10-123662080-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662080
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662080
    reference: chr 10
allele count: 2
allele frequency: 1.739644764539081e-5
allele num: 114966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.639A>G
  hgvsp: ENST00000224652.6:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.639A>G
  hgvsp: ENST00000369043.3:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.294A>G
  hgvsp: ENST00000543447.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.618A>G
  hgvsp: ENST00000540606.1:c.618A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2571A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.351A>G
  hgvsp: ENST00000369040.3:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.628A>G
  hgvsp: ENST00000423243.1:c.628A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.618A>G
  hgvsp: ENST00000455628.1:c.618A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys213Lys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

10-123662083-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662083
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662083
    reference: chr 10
allele count: 1
allele frequency: 8.711256685889507e-6
allele num: 114794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.625G>A
  hgvsp: ENST00000423243.1:c.625G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.291G>A
  hgvsp: ENST00000543447.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.348G>A
  hgvsp: ENST00000369040.3:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.615G>A
  hgvsp: ENST00000540606.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2574G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.636G>A
  hgvsp: ENST00000224652.6:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.636G>A
  hgvsp: ENST00000369043.3:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.615G>A
  hgvsp: ENST00000455628.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20843
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg212Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

10-123662086-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662086
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662086
    reference: chr 10
allele count: 3
allele frequency: 2.666097899114855e-5
allele num: 112524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.345C>G
  hgvsp: ENSP00000358036.3:p.Ile115Met
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.622C>G
  hgvsp: ENSP00000397787.1:p.Ile208Met
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.288C>G
  hgvsp: ENSP00000444852.1:p.Ile96Met
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2577C>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.612C>G
  hgvsp: ENSP00000440881.1:p.Ile204Met
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.633C>G
  hgvsp: ENSP00000358039.3:p.Ile211Met
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.612C>G
  hgvsp: ENSP00000405099.1:p.Ile204Met
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.633C>G
  hgvsp: ENSP00000224652.6:p.Ile211Met
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile211Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

10-123662102-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662102
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662102
    reference: chr 10
allele count: 2
allele frequency: 1.94688887158321e-5
allele num: 102728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.606G>A
  hgvsp: ENSP00000397787.1:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.329G>A
  hgvsp: ENSP00000358036.3:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.617G>A
  hgvsp: ENSP00000358039.3:p.Arg206Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.617G>A
  hgvsp: ENSP00000224652.6:p.Arg206Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.596G>A
  hgvsp: ENSP00000405099.1:p.Arg199Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.272G>A
  hgvsp: ENSP00000444852.1:p.Arg91Gln
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2593G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.596G>A
  hgvsp: ENSP00000440881.1:p.Arg199Gln
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg206Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-123662106-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662106
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662106
    reference: chr 10
allele count: 36
allele frequency: 3.63687794233528e-4
allele num: 98986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.325T>C
  hgvsp: ENSP00000358036.3:p.Cys109Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.592T>C
  hgvsp: ENSP00000440881.1:p.Cys198Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.602T>C
  hgvsp: ENSP00000397787.1:p.Cys202Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.613T>C
  hgvsp: ENSP00000224652.6:p.Cys205Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.592T>C
  hgvsp: ENSP00000405099.1:p.Cys198Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.613T>C
  hgvsp: ENSP00000358039.3:p.Cys205Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.268T>C
  hgvsp: ENSP00000444852.1:p.Cys90Arg
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2597T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12632
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15932
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys205Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

10-123662110-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662110
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662110
    reference: chr 10
allele count: 2
allele frequency: 2.07939115427003e-5
allele num: 96182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2601T>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.588T>A
  hgvsp: ENST00000540606.1:c.588T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.609T>A
  hgvsp: ENST00000369043.3:c.609T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.588T>A
  hgvsp: ENST00000455628.1:c.588T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.264T>A
  hgvsp: ENST00000543447.1:c.264T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.598T>A
  hgvsp: ENST00000423243.1:c.598T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.321T>A
  hgvsp: ENST00000369040.3:c.321T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.609T>A
  hgvsp: ENST00000224652.6:c.609T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11391
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14469
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro203Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/10-123662121-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662121
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662121
    reference: chr 10
allele count: 5
allele frequency: 5.719907566293729e-5
allele num: 87414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.598T>G
  hgvsp: ENSP00000224652.6:p.Leu200Val
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.577T>G
  hgvsp: ENSP00000440881.1:p.Leu193Val
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.310T>G
  hgvsp: ENSP00000358036.3:p.Leu104Val
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.253T>G
  hgvsp: ENSP00000444852.1:p.Leu85Val
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.577T>G
  hgvsp: ENSP00000405099.1:p.Leu193Val
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.598T>G
  hgvsp: ENSP00000358039.3:p.Leu200Val
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.587T>G
  hgvsp: ENSP00000397787.1:p.Leu197Val
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2612T>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu200Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS

10-123662121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662121
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662121
    reference: chr 10
allele count: 1
allele frequency: 1.143981513258746e-5
allele num: 87414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.598T>C
  hgvsp: ENST00000224652.6:c.598T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.253T>C
  hgvsp: ENST00000543447.1:c.253T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.310T>C
  hgvsp: ENST00000369040.3:c.310T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.577T>C
  hgvsp: ENST00000455628.1:c.577T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.577T>C
  hgvsp: ENST00000540606.1:c.577T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.587T>C
  hgvsp: ENST00000423243.1:c.587T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.598T>C
  hgvsp: ENST00000369043.3:c.598T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2612T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30955
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17753
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu200Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

10-123662128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662128
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662128
    reference: chr 10
allele count: 1
allele frequency: 1.31832203970786e-5
allele num: 75854
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.591G>A
  hgvsp: ENST00000369043.3:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.591G>A
  hgvsp: ENST00000224652.6:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.246G>A
  hgvsp: ENST00000543447.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.570G>A
  hgvsp: ENST00000455628.1:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.580G>A
  hgvsp: ENST00000423243.1:c.580G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.303G>A
  hgvsp: ENST00000369040.3:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.570G>A
  hgvsp: ENST00000540606.1:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2619G>A
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly197Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

10-123662143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662143
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662143
    reference: chr 10
allele count: 1
allele frequency: 1.988150622291145e-5
allele num: 50298
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.584-8C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.239-8C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2634C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.296-8C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.573-8C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.563-8C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.563-8C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.584-8C>T
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28013
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7768
  bin: 6.25e1
  variant carriers: 0
hgvs: c.584-8C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

10-123662150-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662150
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662150
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 40538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.239-15T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.563-15T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.584-15T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.563-15T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.296-15T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.584-15T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2641T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.573-15T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6560
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-123662153-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662153
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662153
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 37920
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.563-18T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.563-18T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.584-18T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.296-18T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.239-18T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2644T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.573-18T>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.584-18T>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17907
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22054
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

10-123662161-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662161
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662161
    reference: chr 10
allele count: 1
allele frequency: 3.035085589413621e-5
allele num: 32948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.296-26G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.573-26G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.563-26G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.584-26G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.584-26G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.239-26G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.563-26G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2652G>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15934
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

10-123662166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123662166
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123662166
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 29848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.296-31G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.573-31G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.563-31G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.584-31G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.584-31G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-84-2657G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.239-31G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.563-31G>A
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26678
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/10-123670370-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123670370
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123670370
    reference: chr 10
allele count: 15
allele frequency: 1.235584843492587e-4
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.238+51G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.583+51G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.562+51G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.583+51G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.572+51G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.295+51G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-85+51G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.562+51G>T
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

10-123670370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123670370
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123670370
    reference: chr 10
allele count: 4
allele frequency: 3.29489291598023e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.562+51G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.583+51G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.295+51G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.562+51G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.238+51G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.583+51G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-85+51G>A
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.572+51G>A
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-123670371-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123670371
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123670371
    reference: chr 10
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.583+50T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-85+50T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.562+50T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.562+50T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.583+50T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.238+50T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.295+50T>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.572+50T>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

10-123670373-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123670373
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123670373
    reference: chr 10
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.572+48G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.295+48G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.562+48G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.583+48G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.562+48G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.238+48G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.583+48G>C
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-85+48G>C
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-123670380-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123670380
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123670380
    reference: chr 10
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.295+41G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.583+41G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.572+41G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.562+41G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.583+41G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.562+41G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.238+41G>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-85+41G>T
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

10-123670387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123670387
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123670387
    reference: chr 10
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.562+34C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.562+34C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.572+34C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.583+34C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.295+34C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.238+34C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.583+34C>T
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-85+34C>T
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

10-123670392-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123670392
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123670392
    reference: chr 10
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358036
  ensembl transcript: ENST00000369040
  gene symbol: ATE1
  hgvsc: ENST00000369040.3:c.295+29A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000358039
  ensembl transcript: ENST00000369043
  gene symbol: ATE1
  hgvsc: ENST00000369043.3:c.583+29A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000397787
  ensembl transcript: ENST00000423243
  gene symbol: ATE1
  hgvsc: ENST00000423243.1:c.572+29A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444852
  ensembl transcript: ENST00000543447
  gene symbol: ATE1
  hgvsc: ENST00000543447.1:c.238+29A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000224652
  ensembl transcript: ENST00000224652
  gene symbol: ATE1
  hgvsc: ENST00000224652.6:c.583+29A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000440881
  ensembl transcript: ENST00000540606
  gene symbol: ATE1
  hgvsc: ENST00000540606.1:c.562+29A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000444514
  ensembl transcript: ENST00000535655
  gene symbol: ATE1
  hgvsc: ENST00000535655.1:c.-85+29A>G
  variant of: http://identifiers.org/hgnc/782
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107669
  ensembl protein: ENSP00000405099
  ensembl transcript: ENST00000455628
  gene symbol: ATE1
  hgvsc: ENST00000455628.1:c.562+29A>G
  variant of: http://identifiers.org/hgnc/782
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.378e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele count: 4
allele frequency: 3.856536829926726e-4
allele num: 10372
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.924699e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

ClippingRankSum
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SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -2.474e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Other
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 3.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

MQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.39e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.91822e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele count: 12
allele frequency: 1.393404551788203e-3
allele num: 8612
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
type: SiteQuality
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FS
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
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Other
type: Population
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African
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.04266118798719e-5
allele num: 66196
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South Asian
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East Asian
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.142e-1

ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 1.523275651961979e-5
allele num: 65648
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African
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East Asian
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.640618e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 1.718e1

GenotypeQuality
all individuals: 20332
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 695
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1465
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 1576
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 3657
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5582
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 2688
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1872
bin: 9.75e1
variant carriers: 593

GenotypeQuality
all individuals: 2669
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 314
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 27
allele frequency: 4.43932916803683e-3
allele num: 6082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 247
allele frequency: 4.555010511562719e-3
allele num: 54226
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 3.074670571010249e-3
allele num: 6830
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 8.086253369272238e-3
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 41
allele frequency: 4.320337197049526e-3
allele num: 9490
num of homozygotes: 0

African
type: Population
allele count: 252
allele frequency: 2.922755741127349e-2
allele num: 8622
num of homozygotes: 2

South Asian
type: Population
allele count: 59
allele frequency: 4.846393954328898e-3
allele num: 12174
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

FS
type: SiteQuality
SIO_000300: 1.766e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.19e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

DP
type: SiteQuality
SIO_000300: 1.494228e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.12e0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

GenotypeQuality
all individuals: 3468
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20332
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.844133810349279e-5
allele num: 54226
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 1.766e0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.19e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

QD
type: SiteQuality
SIO_000300: 6.12e0

DP
type: SiteQuality
SIO_000300: 1.494228e6

GenotypeQuality
all individuals: 1139
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2922
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 20332
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 3657
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1465
bin: 7.5e0
variant carriers: 21

GenotypeQuality
all individuals: 3751
bin: 3.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1576
bin: 1.25e1
variant carriers: 34

GenotypeQuality
all individuals: 2688
bin: 4.25e1
variant carriers: 13

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 638
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1872
bin: 9.75e1
variant carriers: 13

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.644195988161789e-4
allele num: 6082
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.695417789757413e-3
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.376185458377239e-4
allele num: 9490
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 2.135699030721209e-3
allele num: 12174
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.320644216691069e-4
allele num: 6830
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.623753189515194e-3
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 108
allele frequency: 1.991664515177221e-3
allele num: 54226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.19e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

QD
type: SiteQuality
SIO_000300: 6.12e0

DP
type: SiteQuality
SIO_000300: 1.494228e6

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.844133810349279e-5
allele num: 54226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.19e-2

QD
type: SiteQuality
SIO_000300: 6.12e0

DP
type: SiteQuality
SIO_000300: 1.494228e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

GenotypeQuality
all individuals: 705
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5083
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549042691616581e-5
allele num: 64556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.62e0

QD
type: SiteQuality
SIO_000300: 1.401e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

DP
type: SiteQuality
SIO_000300: 1.477407e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
all individuals: 39015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5081
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.67314702308627e-3
allele num: 8230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 1.482186e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.38e0

QD
type: SiteQuality
SIO_000300: 1.481e1

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547125440930751e-5
allele num: 64636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.487087e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.164e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5099
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.036326942482341e-4
allele num: 9910
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.509397e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.19e-1

QD
type: SiteQuality
SIO_000300: 2.807e1

GenotypeQuality
all individuals: 494
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5178
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65050
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.61271676300578e-4
allele num: 8304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.77e-1

QD
type: SiteQuality
SIO_000300: 1.736e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.242e0

FS
type: SiteQuality
SIO_000300: 3.411e0

DP
type: SiteQuality
SIO_000300: 1.5259e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.725e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e0

GenotypeQuality
all individuals: 839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.193887297039159e-4
allele num: 8376
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65436
num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.542472e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.073e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.34e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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SIO_000300: 5.89e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.582748e6

VQSLOD
type: SiteQuality
SIO_000300: -8.066e-1

MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.252e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.413e0

MQRankSum
type: SiteQuality
SIO_000300: -1.161e0

DP
type: SiteQuality
SIO_000300: 1.589715e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.11e1

DP
type: SiteQuality
SIO_000300: 1.590635e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.590635e6

ReadPosRankSum
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FS
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ClippingRankSum
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SIO_000300: 1.01e0

MQ
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
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DP
type: SiteQuality
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ClippingRankSum
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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DP
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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African
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Latino
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allele num: 11574
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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VQSLOD
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DP
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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East Asian
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Other
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European (Non-Finnish)
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Other
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Latino
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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QD
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66736
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Latino
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Other
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African
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East Asian
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European (Finnish)
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South Asian
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DP
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VQSLOD
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FS
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ReadPosRankSum
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QD
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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African
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MQRankSum
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ClippingRankSum
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MQ
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QD
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FS
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DP
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Latino
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East Asian
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Other
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European (Finnish)
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InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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FS
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MQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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African
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Other
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European (Finnish)
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
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Other
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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African
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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African
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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MQ
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Other
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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Other
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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European (Finnish)
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FS
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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VQSLOD
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DP
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FS
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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SIO_000300: -3.211e0

GenotypeQuality
all individuals: 1040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734003814808393e-4
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.791e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.07e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 2.197e0

DP
type: SiteQuality
SIO_000300: 1.58719e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.887e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

DP
type: SiteQuality
SIO_000300: 1.586183e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

QD
type: SiteQuality
SIO_000300: 1.211e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 3.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.109e0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 2.464e1

VQSLOD
type: SiteQuality
SIO_000300: -2.215e0

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

DP
type: SiteQuality
SIO_000300: 1.582188e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 1.337e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.884e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.175889328063241e-5
allele num: 16192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

DP
type: SiteQuality
SIO_000300: 1.543523e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

QD
type: SiteQuality
SIO_000300: 1.386e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
all individuals: 370
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62850
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.503128911138924e-4
allele num: 7990
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.494e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

DP
type: SiteQuality
SIO_000300: 1.497345e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.263309532757109e-5
allele num: 15966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.05e-1

DP
type: SiteQuality
SIO_000300: 1.495079e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15766
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.045066991473812e-4
allele num: 9852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.486e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.456895e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2888
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 2
allele frequency: 1.348254011055683e-4
allele num: 14834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55944
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 5.38e0

DP
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 6.696677703783623e-4
allele num: 53758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8676
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.214341e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

GenotypeQuality
all individuals: 276
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23949
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 1576
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 626
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.834944009817457e-5
allele num: 52152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

DP
type: SiteQuality
SIO_000300: 1.169933e6

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 3.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 350
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 17753
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.349698662354843e-5
allele num: 13606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.513536523071684e-5
allele num: 46984
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.474e1

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

DP
type: SiteQuality
SIO_000300: 1.045718e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

FS
type: SiteQuality
SIO_000300: 3.605e0

GenotypeQuality
all individuals: 286
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 2497
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46984
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.367240907847963e-4
allele num: 7314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

DP
type: SiteQuality
SIO_000300: 1.045718e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.474e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

FS
type: SiteQuality
SIO_000300: 3.605e0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 1636
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.903888713246918e-5
allele num: 12652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40218
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.026e0

FS
type: SiteQuality
SIO_000300: 3.0143e1

MQ
type: SiteQuality
SIO_000300: 3.816e1

QD
type: SiteQuality
SIO_000300: 9.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.816e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.88e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 9.20526e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 641
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variant carriers: 0

GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 1188
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1566
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variant carriers: 1

GenotypeQuality
all individuals: 838
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.881384878124515e-5
allele num: 25764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.246e0

DP
type: SiteQuality
SIO_000300: 7.27708e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.423e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.726e0

QD
type: SiteQuality
SIO_000300: 1.812e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 3.854e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 275
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GenotypeQuality
all individuals: 1566
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.119e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.56801e5

VQSLOD
type: SiteQuality
SIO_000300: -4.883e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 166
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variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.291e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.32873e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.198e1

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.232859636000998e-5
allele num: 16044
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.005e-1

QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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SIO_000300: -7.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 5.83023e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.88e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14262
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3480
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

QD
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SIO_000300: 1.556e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.45545e5

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.441476071497213e-3
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

DP
type: SiteQuality
SIO_000300: 3.212428e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.656e0

QD
type: SiteQuality
SIO_000300: 1.283e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

FS
type: SiteQuality
SIO_000300: 5.442e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 3.212428e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

FS
type: SiteQuality
SIO_000300: 5.442e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.656e0

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

FS
type: SiteQuality
SIO_000300: 3.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.305e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

DP
type: SiteQuality
SIO_000300: 3.212174e6

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.89e-1

DP
type: SiteQuality
SIO_000300: 3.212137e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

VQSLOD
type: SiteQuality
SIO_000300: -1.353e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

QD
type: SiteQuality
SIO_000300: 1.257e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.212404e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

MQ
type: SiteQuality
SIO_000300: 5.858e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.399e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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