10-123243263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243263
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243263
    reference: chr 10
allele count: 1
allele frequency: 8.457231778894133e-6
allele num: 118242
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2253C>T
  hgvsp: ENST00000457416.2:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1914C>T
  hgvsp: ENST00000369061.4:c.1914C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2244C>T
  hgvsp: ENST00000346997.2:c.2244C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2250C>T
  hgvsp: ENST00000358487.5:c.2250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1977C>T
  hgvsp: ENST00000336553.6:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2244C>T
  hgvsp: ENST00000351936.6:c.2244C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1566C>T
  hgvsp: ENST00000478859.1:c.1566C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2253C>T
  hgvsp: ENST00000369058.3:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1899C>T
  hgvsp: ENST00000356226.4:c.1899C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2253C>T
  hgvsp: ENST00000369056.1:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1986C>T
  hgvsp: ENST00000360144.3:c.1986C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1908C>T
  hgvsp: ENST00000369059.1:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1646C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1297C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1902C>T
  hgvsp: ENST00000369060.4:c.1902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1983C>T
  hgvsp: ENST00000357555.5:c.1983C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe751Phe
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

10-123243267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243267
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243267
    reference: chr 10
allele count: 2
allele frequency: 1.69505890329689e-5
allele num: 117990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1979C>T
  hgvsp: ENSP00000350166.5:p.Thr660Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2249C>T
  hgvsp: ENSP00000410294.2:p.Thr750Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1895C>T
  hgvsp: ENSP00000348559.4:p.Thr632Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1642C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1982C>T
  hgvsp: ENSP00000353262.3:p.Thr661Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2249C>T
  hgvsp: ENSP00000358052.1:p.Thr750Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1973C>T
  hgvsp: ENSP00000337665.6:p.Thr658Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1910C>T
  hgvsp: ENSP00000358057.4:p.Thr637Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2246C>T
  hgvsp: ENSP00000351276.5:p.Thr749Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2249C>T
  hgvsp: ENSP00000358054.3:p.Thr750Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2240C>T
  hgvsp: ENSP00000263451.5:p.Thr747Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2240C>T
  hgvsp: ENSP00000309878.8:p.Thr747Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1898C>T
  hgvsp: ENSP00000358056.4:p.Thr633Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1293C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1904C>T
  hgvsp: ENSP00000358055.1:p.Thr635Met
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1562C>T
  hgvsp: ENSP00000474011.1:p.Thr521Met
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Thr750Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

10-123243268-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243268
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243268
    reference: chr 10
allele count: 2
allele frequency: 1.69485780143046e-5
allele num: 118004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2248A>G
  hgvsp: ENSP00000358054.3:p.Thr750Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2245A>G
  hgvsp: ENSP00000351276.5:p.Thr749Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1292A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1894A>G
  hgvsp: ENSP00000348559.4:p.Thr632Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2239A>G
  hgvsp: ENSP00000263451.5:p.Thr747Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2248A>G
  hgvsp: ENSP00000410294.2:p.Thr750Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1897A>G
  hgvsp: ENSP00000358056.4:p.Thr633Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1909A>G
  hgvsp: ENSP00000358057.4:p.Thr637Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1972A>G
  hgvsp: ENSP00000337665.6:p.Thr658Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2239A>G
  hgvsp: ENSP00000309878.8:p.Thr747Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1561A>G
  hgvsp: ENSP00000474011.1:p.Thr521Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2248A>G
  hgvsp: ENSP00000358052.1:p.Thr750Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1981A>G
  hgvsp: ENSP00000353262.3:p.Thr661Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1903A>G
  hgvsp: ENSP00000358055.1:p.Thr635Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1978A>G
  hgvsp: ENSP00000350166.5:p.Thr660Ala
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1641A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr750Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

10-123243281-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243281
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243281
    reference: chr 10
allele count: 18
allele frequency: 1.542522195180475e-4
allele num: 116692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2235C>T
  hgvsp: ENST00000369058.3:c.2235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1968C>T
  hgvsp: ENST00000360144.3:c.1968C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1965C>T
  hgvsp: ENST00000357555.5:c.1965C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2226C>T
  hgvsp: ENST00000351936.6:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1896C>T
  hgvsp: ENST00000369061.4:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2235C>T
  hgvsp: ENST00000457416.2:c.2235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1959C>T
  hgvsp: ENST00000336553.6:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1881C>T
  hgvsp: ENST00000356226.4:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1548C>T
  hgvsp: ENST00000478859.1:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1890C>T
  hgvsp: ENST00000369059.1:c.1890C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2235C>T
  hgvsp: ENST00000369056.1:c.2235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2226C>T
  hgvsp: ENST00000346997.2:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1884C>T
  hgvsp: ENST00000369060.4:c.1884C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1628C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2232C>T
  hgvsp: ENST00000358487.5:c.2232C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1279C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro745Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

10-123243283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243283
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243283
    reference: chr 10
allele count: 3
allele frequency: 2.580778362754207e-5
allele num: 116244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2224C>T
  hgvsp: ENSP00000309878.8:p.Pro742Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1879C>T
  hgvsp: ENSP00000348559.4:p.Pro627Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1957C>T
  hgvsp: ENSP00000337665.6:p.Pro653Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2224C>T
  hgvsp: ENSP00000263451.5:p.Pro742Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1882C>T
  hgvsp: ENSP00000358056.4:p.Pro628Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2233C>T
  hgvsp: ENSP00000410294.2:p.Pro745Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1546C>T
  hgvsp: ENSP00000474011.1:p.Pro516Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1966C>T
  hgvsp: ENSP00000353262.3:p.Pro656Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2230C>T
  hgvsp: ENSP00000351276.5:p.Pro744Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2233C>T
  hgvsp: ENSP00000358052.1:p.Pro745Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2233C>T
  hgvsp: ENSP00000358054.3:p.Pro745Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1626C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1894C>T
  hgvsp: ENSP00000358057.4:p.Pro632Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1963C>T
  hgvsp: ENSP00000350166.5:p.Pro655Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1277C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1888C>T
  hgvsp: ENSP00000358055.1:p.Pro630Ser
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro745Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

10-123243284-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243284
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243284
    reference: chr 10
allele count: 1
allele frequency: 8.618312189740762e-6
allele num: 116032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2232G>C
  hgvsp: ENST00000369058.3:c.2232G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2229G>C
  hgvsp: ENST00000358487.5:c.2229G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1276G>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1962G>C
  hgvsp: ENST00000357555.5:c.1962G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1881G>C
  hgvsp: ENST00000369060.4:c.1881G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1887G>C
  hgvsp: ENST00000369059.1:c.1887G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1893G>C
  hgvsp: ENST00000369061.4:c.1893G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2223G>C
  hgvsp: ENST00000346997.2:c.2223G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2232G>C
  hgvsp: ENST00000369056.1:c.2232G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2223G>C
  hgvsp: ENST00000351936.6:c.2223G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2232G>C
  hgvsp: ENST00000457416.2:c.2232G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1956G>C
  hgvsp: ENST00000336553.6:c.1956G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1625G>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1878G>C
  hgvsp: ENST00000356226.4:c.1878G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1545G>C
  hgvsp: ENST00000478859.1:c.1545G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1965G>C
  hgvsp: ENST00000360144.3:c.1965G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val744Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-123243333-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243333
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243333
    reference: chr 10
allele count: 1
allele frequency: 1.062496015639941e-5
allele num: 94118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2199-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2199-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1576A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2190-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1860-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1845-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2199-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1923-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2190-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1932-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1848-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1854-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1512-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1929-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2196-16A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1243-16A>C
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

10-123243337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243337
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243337
    reference: chr 10
allele count: 2
allele frequency: 2.188566926376608e-5
allele num: 91384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2199-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2190-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1923-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2190-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1848-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2199-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1932-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1860-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2199-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1512-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2196-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1854-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1845-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1572A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1243-20A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1929-20A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-123243353-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243353
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243353
    reference: chr 10
allele count: 1
allele frequency: 1.209248331237303e-5
allele num: 82696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2196-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2190-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1556A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1845-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1854-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1848-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1860-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2199-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2190-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1929-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2199-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1932-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1243-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1512-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2199-36A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1923-36A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

10-123243358-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243358
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243358
    reference: chr 10
allele count: 3
allele frequency: 3.905436367423454e-5
allele num: 76816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2190-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2199-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2199-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1854-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1243-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1929-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2190-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1923-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1848-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1551A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2199-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1845-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1860-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2196-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1932-41A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1512-41A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17832
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19951
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

10-123243361-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243361
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243361
    reference: chr 10
allele count: 5
allele frequency: 6.671292095853125e-5
allele num: 74948
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2199-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2190-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1512-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2199-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1854-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2196-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1243-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1932-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2190-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1860-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1929-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1548C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2199-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1845-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1848-44C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1923-44C>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18748
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

10-123243365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243365
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243365
    reference: chr 10
allele count: 1
allele frequency: 1.419768861629327e-5
allele num: 70434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1512-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1860-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1854-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2199-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1932-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2196-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2199-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1544C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1929-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1845-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2199-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2190-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1243-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2190-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1848-48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1923-48C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

10-123243367-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243367
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243367
    reference: chr 10
allele count: 3
allele frequency: 4.294917680744452e-5
allele num: 69850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1243-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2199-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2199-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1542C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1929-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1845-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1932-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1848-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1854-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2190-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1860-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2190-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1512-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1923-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2196-50C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2199-50C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17446
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

10-123243368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123243368
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123243368
    reference: chr 10
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1929-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1512-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1860-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1845-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2190-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2190-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1932-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1848-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1243-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+1541C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2199-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1923-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2199-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2196-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2199-51C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1854-51C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

10-123244861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244861
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244861
    reference: chr 10
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+48C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+48C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

10-123244861-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244861
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244861
    reference: chr 10
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+48C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+48C>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

10-123244869-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244869
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244869
    reference: chr 10
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+40T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+40T>C
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-123244871-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244871
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244871
    reference: chr 10
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+38A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+38A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

10-123244878-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244878
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244878
    reference: chr 10
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+31C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+31C>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

10-123244884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244884
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244884
    reference: chr 10
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+25G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+25G>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

10-123244885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244885
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244885
    reference: chr 10
allele count: 12
allele frequency: 9.883701775771753e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+24C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+24C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

10-123244887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244887
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244887
    reference: chr 10
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+22G>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

10-123244891-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244891
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244891
    reference: chr 10
allele count: 4
allele frequency: 3.295761650517435e-5
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+18T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+18T>C
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

10-123244902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244902
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244902
    reference: chr 10
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1928+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2198+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1511+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1931+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2189+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1847+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1242+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1922+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.971+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2198+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1853+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2198+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2189+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2195+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1859+7G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1844+7G>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2198+7G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

10-123244914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244914
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244914
    reference: chr 10
allele count: 39
allele frequency: 3.21220307712582e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2193C>T
  hgvsp: ENST00000369058.3:c.2193C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2184C>T
  hgvsp: ENST00000351936.6:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2193C>T
  hgvsp: ENST00000457416.2:c.2193C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2190C>T
  hgvsp: ENST00000358487.5:c.2190C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1842C>T
  hgvsp: ENST00000369060.4:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1917C>T
  hgvsp: ENST00000336553.6:c.1917C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.966C>T
  hgvsp: ENST00000429361.1:c.966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2184C>T
  hgvsp: ENST00000346997.2:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1923C>T
  hgvsp: ENST00000357555.5:c.1923C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1854C>T
  hgvsp: ENST00000369061.4:c.1854C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2193C>T
  hgvsp: ENST00000369056.1:c.2193C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1848C>T
  hgvsp: ENST00000369059.1:c.1848C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1926C>T
  hgvsp: ENST00000360144.3:c.1926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1506C>T
  hgvsp: ENST00000478859.1:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1839C>T
  hgvsp: ENST00000356226.4:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1237C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn731Asn
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

10-123244915-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244915
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244915
    reference: chr 10
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2183A>G
  hgvsp: ENSP00000309878.8:p.Asn728Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1925A>G
  hgvsp: ENSP00000353262.3:p.Asn642Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.965A>G
  hgvsp: ENSP00000404219.1:p.Asn322Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1922A>G
  hgvsp: ENSP00000350166.5:p.Asn641Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2192A>G
  hgvsp: ENSP00000358052.1:p.Asn731Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1916A>G
  hgvsp: ENSP00000337665.6:p.Asn639Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1838A>G
  hgvsp: ENSP00000348559.4:p.Asn613Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2192A>G
  hgvsp: ENSP00000358054.3:p.Asn731Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1853A>G
  hgvsp: ENSP00000358057.4:p.Asn618Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1847A>G
  hgvsp: ENSP00000358055.1:p.Asn616Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1236A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1505A>G
  hgvsp: ENSP00000474011.1:p.Asn502Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2183A>G
  hgvsp: ENSP00000263451.5:p.Asn728Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2192A>G
  hgvsp: ENSP00000410294.2:p.Asn731Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1841A>G
  hgvsp: ENSP00000358056.4:p.Asn614Ser
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2189A>G
  hgvsp: ENSP00000351276.5:p.Asn730Ser
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn731Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-123244928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244928
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244928
    reference: chr 10
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1492G>A
  hgvsp: ENSP00000474011.1:p.Ala498Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1909G>A
  hgvsp: ENSP00000350166.5:p.Ala637Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1903G>A
  hgvsp: ENSP00000337665.6:p.Ala635Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1912G>A
  hgvsp: ENSP00000353262.3:p.Ala638Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2179G>A
  hgvsp: ENSP00000358054.3:p.Ala727Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.952G>A
  hgvsp: ENSP00000404219.1:p.Ala318Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2170G>A
  hgvsp: ENSP00000263451.5:p.Ala724Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1834G>A
  hgvsp: ENSP00000358055.1:p.Ala612Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1840G>A
  hgvsp: ENSP00000358057.4:p.Ala614Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2176G>A
  hgvsp: ENSP00000351276.5:p.Ala726Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2170G>A
  hgvsp: ENSP00000309878.8:p.Ala724Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1825G>A
  hgvsp: ENSP00000348559.4:p.Ala609Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1828G>A
  hgvsp: ENSP00000358056.4:p.Ala610Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2179G>A
  hgvsp: ENSP00000410294.2:p.Ala727Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1223G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2179G>A
  hgvsp: ENSP00000358052.1:p.Ala727Thr
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala727Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-123244950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244950
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244950
    reference: chr 10
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2154A>G
  hgvsp: ENST00000358487.5:c.2154A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2148A>G
  hgvsp: ENST00000346997.2:c.2148A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1890A>G
  hgvsp: ENST00000360144.3:c.1890A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.930A>G
  hgvsp: ENST00000429361.1:c.930A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1806A>G
  hgvsp: ENST00000369060.4:c.1806A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1881A>G
  hgvsp: ENST00000336553.6:c.1881A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1470A>G
  hgvsp: ENST00000478859.1:c.1470A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2148A>G
  hgvsp: ENST00000351936.6:c.2148A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1887A>G
  hgvsp: ENST00000357555.5:c.1887A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1818A>G
  hgvsp: ENST00000369061.4:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1812A>G
  hgvsp: ENST00000369059.1:c.1812A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2157A>G
  hgvsp: ENST00000369058.3:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2157A>G
  hgvsp: ENST00000457416.2:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1803A>G
  hgvsp: ENST00000356226.4:c.1803A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2157A>G
  hgvsp: ENST00000369056.1:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1201A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu719Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

10-123244980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244980
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244980
    reference: chr 10
allele count: 11
allele frequency: 9.061254077564335e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2127C>T
  hgvsp: ENST00000369056.1:c.2127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1788C>T
  hgvsp: ENST00000369061.4:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2127C>T
  hgvsp: ENST00000369058.3:c.2127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1776C>T
  hgvsp: ENST00000369060.4:c.1776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2118C>T
  hgvsp: ENST00000351936.6:c.2118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1171C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1851C>T
  hgvsp: ENST00000336553.6:c.1851C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1857C>T
  hgvsp: ENST00000357555.5:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2124C>T
  hgvsp: ENST00000358487.5:c.2124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1860C>T
  hgvsp: ENST00000360144.3:c.1860C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2118C>T
  hgvsp: ENST00000346997.2:c.2118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1773C>T
  hgvsp: ENST00000356226.4:c.1773C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.900C>T
  hgvsp: ENST00000429361.1:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1440C>T
  hgvsp: ENST00000478859.1:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1782C>T
  hgvsp: ENST00000369059.1:c.1782C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2127C>T
  hgvsp: ENST00000457416.2:c.2127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro709Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

10-123244986-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244986
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244986
    reference: chr 10
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2118G>A
  hgvsp: ENST00000358487.5:c.2118G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1165G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.894G>A
  hgvsp: ENST00000429361.1:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1845G>A
  hgvsp: ENST00000336553.6:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1854G>A
  hgvsp: ENST00000360144.3:c.1854G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2121G>A
  hgvsp: ENST00000457416.2:c.2121G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1770G>A
  hgvsp: ENST00000369060.4:c.1770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1782G>A
  hgvsp: ENST00000369061.4:c.1782G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2121G>A
  hgvsp: ENST00000369058.3:c.2121G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1434G>A
  hgvsp: ENST00000478859.1:c.1434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2121G>A
  hgvsp: ENST00000369056.1:c.2121G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1776G>A
  hgvsp: ENST00000369059.1:c.1776G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1767G>A
  hgvsp: ENST00000356226.4:c.1767G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2112G>A
  hgvsp: ENST00000346997.2:c.2112G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2112G>A
  hgvsp: ENST00000351936.6:c.2112G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1851G>A
  hgvsp: ENST00000357555.5:c.1851G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly707Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

10-123244989-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123244989
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123244989
    reference: chr 10
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1851A>G
  hgvsp: ENST00000360144.3:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1767A>G
  hgvsp: ENST00000369060.4:c.1767A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1162A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1848A>G
  hgvsp: ENST00000357555.5:c.1848A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2115A>G
  hgvsp: ENST00000358487.5:c.2115A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.891A>G
  hgvsp: ENST00000429361.1:c.891A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1842A>G
  hgvsp: ENST00000336553.6:c.1842A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2109A>G
  hgvsp: ENST00000346997.2:c.2109A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1764A>G
  hgvsp: ENST00000356226.4:c.1764A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2109A>G
  hgvsp: ENST00000351936.6:c.2109A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2118A>G
  hgvsp: ENST00000369058.3:c.2118A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2118A>G
  hgvsp: ENST00000369056.1:c.2118A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1773A>G
  hgvsp: ENST00000369059.1:c.1773A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2118A>G
  hgvsp: ENST00000457416.2:c.2118A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1431A>G
  hgvsp: ENST00000478859.1:c.1431A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1779A>G
  hgvsp: ENST00000369061.4:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro706Pro
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

10-123245026-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245026
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245026
    reference: chr 10
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2078T>C
  hgvsp: ENSP00000351276.5:p.Met693Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2072T>C
  hgvsp: ENSP00000263451.5:p.Met691Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1814T>C
  hgvsp: ENSP00000353262.3:p.Met605Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2081T>C
  hgvsp: ENSP00000358054.3:p.Met694Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1727T>C
  hgvsp: ENSP00000348559.4:p.Met576Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1736T>C
  hgvsp: ENSP00000358055.1:p.Met579Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2081T>C
  hgvsp: ENSP00000410294.2:p.Met694Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1811T>C
  hgvsp: ENSP00000350166.5:p.Met604Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2081T>C
  hgvsp: ENSP00000358052.1:p.Met694Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1742T>C
  hgvsp: ENSP00000358057.4:p.Met581Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1805T>C
  hgvsp: ENSP00000337665.6:p.Met602Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2072T>C
  hgvsp: ENSP00000309878.8:p.Met691Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.854T>C
  hgvsp: ENSP00000404219.1:p.Met285Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1125T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1394T>C
  hgvsp: ENSP00000474011.1:p.Met465Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1730T>C
  hgvsp: ENSP00000358056.4:p.Met577Thr
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met694Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

10-123245027-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245027
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245027
    reference: chr 10
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2071A>G
  hgvsp: ENSP00000309878.8:p.Met691Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1726A>G
  hgvsp: ENSP00000348559.4:p.Met576Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1729A>G
  hgvsp: ENSP00000358056.4:p.Met577Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1813A>G
  hgvsp: ENSP00000353262.3:p.Met605Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1810A>G
  hgvsp: ENSP00000350166.5:p.Met604Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2071A>G
  hgvsp: ENSP00000263451.5:p.Met691Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2080A>G
  hgvsp: ENSP00000358052.1:p.Met694Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2080A>G
  hgvsp: ENSP00000358054.3:p.Met694Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2080A>G
  hgvsp: ENSP00000410294.2:p.Met694Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1804A>G
  hgvsp: ENSP00000337665.6:p.Met602Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1393A>G
  hgvsp: ENSP00000474011.1:p.Met465Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1741A>G
  hgvsp: ENSP00000358057.4:p.Met581Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1735A>G
  hgvsp: ENSP00000358055.1:p.Met579Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1124A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2077A>G
  hgvsp: ENSP00000351276.5:p.Met693Val
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.853A>G
  hgvsp: ENSP00000404219.1:p.Met285Val
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met694Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

10-123245037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245037
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245037
    reference: chr 10
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1716C>T
  hgvsp: ENST00000356226.4:c.1716C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1794C>T
  hgvsp: ENST00000336553.6:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2061C>T
  hgvsp: ENST00000351936.6:c.2061C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2061C>T
  hgvsp: ENST00000346997.2:c.2061C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.843C>T
  hgvsp: ENST00000429361.1:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2070C>T
  hgvsp: ENST00000369058.3:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1383C>T
  hgvsp: ENST00000478859.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1725C>T
  hgvsp: ENST00000369059.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2067C>T
  hgvsp: ENST00000358487.5:c.2067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1731C>T
  hgvsp: ENST00000369061.4:c.1731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2070C>T
  hgvsp: ENST00000457416.2:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1800C>T
  hgvsp: ENST00000357555.5:c.1800C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1114C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1719C>T
  hgvsp: ENST00000369060.4:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2070C>T
  hgvsp: ENST00000369056.1:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1803C>T
  hgvsp: ENST00000360144.3:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8910
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe690Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

10-123245040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245040
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245040
    reference: chr 10
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.840C>T
  hgvsp: ENST00000429361.1:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1380C>T
  hgvsp: ENST00000478859.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1797C>T
  hgvsp: ENST00000357555.5:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1728C>T
  hgvsp: ENST00000369061.4:c.1728C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2058C>T
  hgvsp: ENST00000351936.6:c.2058C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1111C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1791C>T
  hgvsp: ENST00000336553.6:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2058C>T
  hgvsp: ENST00000346997.2:c.2058C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2064C>T
  hgvsp: ENST00000358487.5:c.2064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2067C>T
  hgvsp: ENST00000369056.1:c.2067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2067C>T
  hgvsp: ENST00000369058.3:c.2067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1800C>T
  hgvsp: ENST00000360144.3:c.1800C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1722C>T
  hgvsp: ENST00000369059.1:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1716C>T
  hgvsp: ENST00000369060.4:c.1716C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2067C>T
  hgvsp: ENST00000457416.2:c.2067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1713C>T
  hgvsp: ENST00000356226.4:c.1713C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser689Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

10-123245054-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245054
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245054
    reference: chr 10
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-8T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-8T>C
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2061-8T>C
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-123245056-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245056
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245056
    reference: chr 10
allele count: 9
allele frequency: 7.421823459559309e-5
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-10T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-10T>C
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

10-123245059-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245059
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245059
    reference: chr 10
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-13C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/10-123245068-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245068
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245068
    reference: chr 10
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-22G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-22G>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-123245068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245068
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245068
    reference: chr 10
allele count: 4
allele frequency: 3.299731071917638e-5
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-22G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-22G>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

10-123245069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245069
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245069
    reference: chr 10
allele count: 2
allele frequency: 1.65016501650165e-5
allele num: 121200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-23C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-23C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

10-123245074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245074
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245074
    reference: chr 10
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-28A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-28A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

10-123245077-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245077
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245077
    reference: chr 10
allele count: 1795
allele frequency: 1.48165879750388e-2
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-31A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-31A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8857
  bin: 3.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7392
  bin: 4.25e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 4.75e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 6.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 25
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

10-123245088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245088
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245088
    reference: chr 10
allele count: 5
allele frequency: 4.129296533042631e-5
allele num: 121086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-42G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-42G>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

10-123245089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245089
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245089
    reference: chr 10
allele count: 2
allele frequency: 1.652018766933192e-5
allele num: 121064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-43C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-43C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

10-123245090-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245090
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245090
    reference: chr 10
allele count: 5
allele frequency: 4.128955539406752e-5
allele num: 121096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-44A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-44A>G
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-123245090-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245090
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245090
    reference: chr 10
allele count: 18
allele frequency: 1.486423994186431e-4
allele num: 121096
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-44A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-44A>C
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-123245093-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123245093
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123245093
    reference: chr 10
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1716-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2052-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1710-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.834-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1707-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2052-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2061-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1105-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2058-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1785-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1722-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2061-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2061-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1791-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1374-47G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1794-47G>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

10-123246832-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246832
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246832
    reference: chr 10
allele count: 1
allele frequency: 8.469265037180074e-6
allele num: 118074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2051+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2057+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1706+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.833+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1104+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2060+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2060+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2051+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1373+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1793+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1715+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1709+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1790+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1721+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1784+36C>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2060+36C>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/10-123246833-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246833
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246833
    reference: chr 10
allele count: 1
allele frequency: 8.468834688346883e-6
allele num: 118080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1715+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2057+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2051+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1721+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1709+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2060+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.833+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2051+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2060+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1706+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1373+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1104+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2060+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1793+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1790+35G>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1784+35G>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

10-123246834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246834
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246834
    reference: chr 10
allele count: 1
allele frequency: 8.461668641056017e-6
allele num: 118180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2051+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2060+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1784+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2060+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1104+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1793+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1706+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1790+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1709+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.833+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2051+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1721+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1715+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2057+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1373+34G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2060+34G>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

10-123246837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246837
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246837
    reference: chr 10
allele count: 1
allele frequency: 8.454514710855598e-6
allele num: 118280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1790+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1721+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2057+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1793+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2060+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2060+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2051+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1104+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1709+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2051+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.833+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2060+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1784+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1373+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1715+31C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1706+31C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

10-123246842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246842
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246842
    reference: chr 10
allele count: 8
allele frequency: 6.74957393314547e-5
allele num: 118526
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1373+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1104+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2051+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.833+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2060+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1784+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1721+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1793+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1706+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2060+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1709+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2057+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2060+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2051+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1790+26T>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1715+26T>C
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22204
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

10-123246851-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246851
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246851
    reference: chr 10
allele count: 1
allele frequency: 8.411843876177658e-6
allele num: 118880
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2060+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1706+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2051+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.833+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1784+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1715+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1104+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1793+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2051+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1373+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1709+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2060+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1790+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1721+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2057+17T>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2060+17T>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

10-123246855-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246855
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246855
    reference: chr 10
allele count: 1
allele frequency: 8.401243384020834e-6
allele num: 119030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1709+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2057+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1706+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1721+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1715+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2060+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.833+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1784+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1373+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1790+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2051+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2060+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1104+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2051+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2060+13C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1793+13C>T
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

10-123246861-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246861
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246861
    reference: chr 10
allele count: 1
allele frequency: 8.389824820457749e-6
allele num: 119192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2057+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2060+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1790+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2060+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1793+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1709+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.833+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1373+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1721+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1715+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1104+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2051+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2051+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2060+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1784+7A>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1706+7A>C
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2060+7A>C
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS

10-123246869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246869
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246869
    reference: chr 10
allele count: 1
allele frequency: 8.372544751251695e-6
allele num: 119438
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2059G>A
  hgvsp: ENSP00000410294.2:p.Val687Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1792G>A
  hgvsp: ENSP00000353262.3:p.Val598Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2059G>A
  hgvsp: ENSP00000358052.1:p.Val687Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2050G>A
  hgvsp: ENSP00000263451.5:p.Val684Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.832G>A
  hgvsp: ENSP00000404219.1:p.Val278Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1705G>A
  hgvsp: ENSP00000348559.4:p.Val569Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1789G>A
  hgvsp: ENSP00000350166.5:p.Val597Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1708G>A
  hgvsp: ENSP00000358056.4:p.Val570Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2059G>A
  hgvsp: ENSP00000358054.3:p.Val687Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2056G>A
  hgvsp: ENSP00000351276.5:p.Val686Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1714G>A
  hgvsp: ENSP00000358055.1:p.Val572Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1783G>A
  hgvsp: ENSP00000337665.6:p.Val595Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1720G>A
  hgvsp: ENSP00000358057.4:p.Val574Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2050G>A
  hgvsp: ENSP00000309878.8:p.Val684Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1372G>A
  hgvsp: ENSP00000474011.1:p.Val458Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1103G>A
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23694
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val687Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

10-123246874-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246874
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246874
    reference: chr 10
allele count: 4
allele frequency: 3.34487314568595e-5
allele num: 119586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1778G>C
  hgvsp: ENSP00000337665.6:p.Ser593Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.827G>C
  hgvsp: ENSP00000404219.1:p.Ser276Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1715G>C
  hgvsp: ENSP00000358057.4:p.Ser572Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2054G>C
  hgvsp: ENSP00000358052.1:p.Ser685Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1787G>C
  hgvsp: ENSP00000353262.3:p.Ser596Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1784G>C
  hgvsp: ENSP00000350166.5:p.Ser595Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1703G>C
  hgvsp: ENSP00000358056.4:p.Ser568Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2045G>C
  hgvsp: ENSP00000309878.8:p.Ser682Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1700G>C
  hgvsp: ENSP00000348559.4:p.Ser567Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2054G>C
  hgvsp: ENSP00000358054.3:p.Ser685Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2045G>C
  hgvsp: ENSP00000263451.5:p.Ser682Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1709G>C
  hgvsp: ENSP00000358055.1:p.Ser570Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2054G>C
  hgvsp: ENSP00000410294.2:p.Ser685Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1098G>C
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1367G>C
  hgvsp: ENSP00000474011.1:p.Ser456Thr
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2051G>C
  hgvsp: ENSP00000351276.5:p.Ser684Thr
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser685Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

10-123246885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246885
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246885
    reference: chr 10
allele count: 2
allele frequency: 1.66858554003771e-5
allele num: 119862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2034C>T
  hgvsp: ENST00000351936.6:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2040C>T
  hgvsp: ENST00000358487.5:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1773C>T
  hgvsp: ENST00000357555.5:c.1773C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2043C>T
  hgvsp: ENST00000369058.3:c.2043C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1776C>T
  hgvsp: ENST00000360144.3:c.1776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.816C>T
  hgvsp: ENST00000429361.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1087C>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2043C>T
  hgvsp: ENST00000457416.2:c.2043C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1692C>T
  hgvsp: ENST00000369060.4:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1356C>T
  hgvsp: ENST00000478859.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2043C>T
  hgvsp: ENST00000369056.1:c.2043C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1767C>T
  hgvsp: ENST00000336553.6:c.1767C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2034C>T
  hgvsp: ENST00000346997.2:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1704C>T
  hgvsp: ENST00000369061.4:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1698C>T
  hgvsp: ENST00000369059.1:c.1698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1689C>T
  hgvsp: ENST00000356226.4:c.1689C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr681Tyr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

10-123246888-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246888
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246888
    reference: chr 10
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1686A>G
  hgvsp: ENST00000356226.4:c.1686A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2031A>G
  hgvsp: ENST00000346997.2:c.2031A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.813A>G
  hgvsp: ENST00000429361.1:c.813A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1353A>G
  hgvsp: ENST00000478859.1:c.1353A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1764A>G
  hgvsp: ENST00000336553.6:c.1764A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2040A>G
  hgvsp: ENST00000369058.3:c.2040A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2040A>G
  hgvsp: ENST00000457416.2:c.2040A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2040A>G
  hgvsp: ENST00000369056.1:c.2040A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1695A>G
  hgvsp: ENST00000369059.1:c.1695A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1689A>G
  hgvsp: ENST00000369060.4:c.1689A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2037A>G
  hgvsp: ENST00000358487.5:c.2037A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2031A>G
  hgvsp: ENST00000351936.6:c.2031A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1770A>G
  hgvsp: ENST00000357555.5:c.1770A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1084A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1701A>G
  hgvsp: ENST00000369061.4:c.1701A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1773A>G
  hgvsp: ENST00000360144.3:c.1773A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val680Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

10-123246890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246890
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246890
    reference: chr 10
allele count: 1
allele frequency: 8.339866228545694e-6
allele num: 119906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1351G>A
  hgvsp: ENSP00000474011.1:p.Val451Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1768G>A
  hgvsp: ENSP00000350166.5:p.Val590Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1693G>A
  hgvsp: ENSP00000358055.1:p.Val565Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2038G>A
  hgvsp: ENSP00000358052.1:p.Val680Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1684G>A
  hgvsp: ENSP00000348559.4:p.Val562Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1771G>A
  hgvsp: ENSP00000353262.3:p.Val591Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.811G>A
  hgvsp: ENSP00000404219.1:p.Val271Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2029G>A
  hgvsp: ENSP00000263451.5:p.Val677Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1762G>A
  hgvsp: ENSP00000337665.6:p.Val588Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2029G>A
  hgvsp: ENSP00000309878.8:p.Val677Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1699G>A
  hgvsp: ENSP00000358057.4:p.Val567Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1082G>A
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2035G>A
  hgvsp: ENSP00000351276.5:p.Val679Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1687G>A
  hgvsp: ENSP00000358056.4:p.Val563Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2038G>A
  hgvsp: ENSP00000410294.2:p.Val680Ile
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2038G>A
  hgvsp: ENSP00000358054.3:p.Val680Ile
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val680Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

10-123246891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246891
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246891
    reference: chr 10
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2028A>G
  hgvsp: ENST00000346997.2:c.2028A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1081A>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1683A>G
  hgvsp: ENST00000356226.4:c.1683A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1761A>G
  hgvsp: ENST00000336553.6:c.1761A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2034A>G
  hgvsp: ENST00000358487.5:c.2034A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1767A>G
  hgvsp: ENST00000357555.5:c.1767A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2037A>G
  hgvsp: ENST00000369058.3:c.2037A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1686A>G
  hgvsp: ENST00000369060.4:c.1686A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2028A>G
  hgvsp: ENST00000351936.6:c.2028A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1350A>G
  hgvsp: ENST00000478859.1:c.1350A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1698A>G
  hgvsp: ENST00000369061.4:c.1698A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.810A>G
  hgvsp: ENST00000429361.1:c.810A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1770A>G
  hgvsp: ENST00000360144.3:c.1770A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2037A>G
  hgvsp: ENST00000369056.1:c.2037A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2037A>G
  hgvsp: ENST00000457416.2:c.2037A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1692A>G
  hgvsp: ENST00000369059.1:c.1692A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg679Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

10-123246909-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246909
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246909
    reference: chr 10
allele count: 2
allele frequency: 1.670090351888037e-5
allele num: 119754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2019A>T
  hgvsp: ENST00000369058.3:c.2019A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1752A>T
  hgvsp: ENST00000360144.3:c.1752A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1063A>T
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1668A>T
  hgvsp: ENST00000369060.4:c.1668A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.2010A>T
  hgvsp: ENST00000351936.6:c.2010A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2019A>T
  hgvsp: ENST00000457416.2:c.2019A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1332A>T
  hgvsp: ENST00000478859.1:c.1332A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2016A>T
  hgvsp: ENST00000358487.5:c.2016A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1749A>T
  hgvsp: ENST00000357555.5:c.1749A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1674A>T
  hgvsp: ENST00000369059.1:c.1674A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.792A>T
  hgvsp: ENST00000429361.1:c.792A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.2010A>T
  hgvsp: ENST00000346997.2:c.2010A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1680A>T
  hgvsp: ENST00000369061.4:c.1680A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1743A>T
  hgvsp: ENST00000336553.6:c.1743A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2019A>T
  hgvsp: ENST00000369056.1:c.2019A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1665A>T
  hgvsp: ENST00000356226.4:c.1665A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro673Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

10-123246924-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123246924
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 123246924
    reference: chr 10
allele count: 60
allele frequency: 5.03220611916264e-4
allele num: 119232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000348559
  ensembl transcript: ENST00000356226
  gene symbol: FGFR2
  hgvsc: ENST00000356226.4:c.1650C>G
  hgvsp: ENST00000356226.4:c.1650C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474109
  ensembl transcript: ENST00000604236
  gene symbol: FGFR2
  hgvsc: ENST00000604236.1:c.*1048C>G
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358056
  ensembl transcript: ENST00000369060
  gene symbol: FGFR2
  hgvsc: ENST00000369060.4:c.1653C>G
  hgvsp: ENST00000369060.4:c.1653C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358057
  ensembl transcript: ENST00000369061
  gene symbol: FGFR2
  hgvsc: ENST00000369061.4:c.1665C>G
  hgvsp: ENST00000369061.4:c.1665C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000337665
  ensembl transcript: ENST00000336553
  gene symbol: FGFR2
  hgvsc: ENST00000336553.6:c.1728C>G
  hgvsp: ENST00000336553.6:c.1728C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358052
  ensembl transcript: ENST00000369056
  gene symbol: FGFR2
  hgvsc: ENST00000369056.1:c.2004C>G
  hgvsp: ENST00000369056.1:c.2004C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000351276
  ensembl transcript: ENST00000358487
  gene symbol: FGFR2
  hgvsc: ENST00000358487.5:c.2001C>G
  hgvsp: ENST00000358487.5:c.2001C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358055
  ensembl transcript: ENST00000369059
  gene symbol: FGFR2
  hgvsc: ENST00000369059.1:c.1659C>G
  hgvsp: ENST00000369059.1:c.1659C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000358054
  ensembl transcript: ENST00000369058
  gene symbol: FGFR2
  hgvsc: ENST00000369058.3:c.2004C>G
  hgvsp: ENST00000369058.3:c.2004C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000263451
  ensembl transcript: ENST00000346997
  gene symbol: FGFR2
  hgvsc: ENST00000346997.2:c.1995C>G
  hgvsp: ENST00000346997.2:c.1995C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000309878
  ensembl transcript: ENST00000351936
  gene symbol: FGFR2
  hgvsc: ENST00000351936.6:c.1995C>G
  hgvsp: ENST00000351936.6:c.1995C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000474011
  ensembl transcript: ENST00000478859
  gene symbol: FGFR2
  hgvsc: ENST00000478859.1:c.1317C>G
  hgvsp: ENST00000478859.1:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000410294
  ensembl transcript: ENST00000457416
  gene symbol: FGFR2
  hgvsc: ENST00000457416.2:c.2004C>G
  hgvsp: ENST00000457416.2:c.2004C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000353262
  ensembl transcript: ENST00000360144
  gene symbol: FGFR2
  hgvsc: ENST00000360144.3:c.1737C>G
  hgvsp: ENST00000360144.3:c.1737C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000350166
  ensembl transcript: ENST00000357555
  gene symbol: FGFR2
  hgvsc: ENST00000357555.5:c.1734C>G
  hgvsp: ENST00000357555.5:c.1734C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000066468
  ensembl protein: ENSP00000404219
  ensembl transcript: ENST00000429361
  gene symbol: FGFR2
  hgvsc: ENST00000429361.1:c.777C>G
  hgvsp: ENST00000429361.1:c.777C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val668Val
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 16955
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 646
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 513
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1564
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1378
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28014
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 727
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1109
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3887
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4673
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525134211810639e-5
allele num: 65568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15376
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.690211e6

QD
type: SiteQuality
SIO_000300: 3.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.202e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.554e0

FS
type: SiteQuality
SIO_000300: 1.158e0

VQSLOD
type: SiteQuality
SIO_000300: -2.463e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

GenotypeDepth
all individuals: 3882
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 681
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1109
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1174
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 923
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1671
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27737
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1190
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16986
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5910
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1196
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4645
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.056141315974451e-5
allele num: 65442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15338
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

DP
type: SiteQuality
SIO_000300: 1.687604e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 3.455e0

QD
type: SiteQuality
SIO_000300: 1.086e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 1340
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1676
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27792
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 657
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3855
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 726
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4654
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5909
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 749
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.304121022430882e-4
allele num: 15336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.251e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.687534e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2176
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 840
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3861
bin: 3.25e1
variant carriers: 4

GenotypeDepth
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26294
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1110
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 726
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1193
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 514
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1181
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 923
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16941
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5921
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39959
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.03179190751445e-5
allele num: 11072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.683501683501683e-3
allele num: 10098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.419e0

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

DP
type: SiteQuality
SIO_000300: 1.670823e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.494e1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

GenotypeDepth
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 922
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1178
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 16912
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1191
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2521
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1109
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2454
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 296
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.813236627379873e-4
allele num: 11030
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.550676094777323e-5
allele num: 64488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 1.721e1

MQRankSum
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SIO_000300: 8.8e-1

VQSLOD
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SIO_000300: -2.387e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.074e1

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.651589729945457e-5
allele num: 15034
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64364
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.99e1

QD
type: SiteQuality
SIO_000300: 1.255e1

InbreedingCoeff
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SIO_000300: 6.9e-3

DP
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MQRankSum
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SIO_000300: 2.7e-2

BaseQRankSum
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SIO_000300: 8.26e-1

FS
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VQSLOD
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SIO_000300: -1.517e0

ClippingRankSum
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SIO_000300: -6.18e-1

ReadPosRankSum
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SIO_000300: -2.3e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -8.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -4.2e-3

MQRankSum
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BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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ClippingRankSum
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SIO_000300: 4.93e-1

DP
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SIO_000300: 1.235666e6

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12712
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.007694773966015e-5
allele num: 49904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.186571e6

BaseQRankSum
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QD
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ReadPosRankSum
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FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 9.65e-1

InbreedingCoeff
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SIO_000300: -5.6e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6778
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44802
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 8.426019548365353e-5
allele num: 11868
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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FS
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SIO_000300: 7.433e0

ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 7.26920281075842e-5
allele num: 41270
num of homozygotes: 0

FS
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.11e1

GenotypeDepth
all individuals: 1108
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1183
bin: 4.75e1
variant carriers: 0

GenotypeDepth
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bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 294
bin: 9.75e1
variant carriers: 0

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1143
bin: 4.25e1
variant carriers: 0

GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4766
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3729
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5891
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.155268022181146e-3
allele num: 4328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.040758e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

QD
type: SiteQuality
SIO_000300: 1.418e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 20455
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1130
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2168
bin: 2.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 166
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16580
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4590
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4512
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5452
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.669941795268863e-5
allele num: 37454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4088
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.413e0

DP
type: SiteQuality
SIO_000300: 1.027867e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.313e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.762e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1106
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20589
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 726
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variant carriers: 0

GenotypeDepth
all individuals: 5993
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1045
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variant carriers: 0

GenotypeDepth
all individuals: 231
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variant carriers: 0

GenotypeDepth
all individuals: 166
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variant carriers: 0

GenotypeDepth
all individuals: 294
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variant carriers: 1

GenotypeDepth
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
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variant carriers: 0

GenotypeQuality
all individuals: 312
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variant carriers: 0

GenotypeQuality
all individuals: 4564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 4624
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
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variant carriers: 0

GenotypeQuality
all individuals: 588
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variant carriers: 0

GenotypeQuality
all individuals: 374
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variant carriers: 0

GenotypeQuality
all individuals: 5434
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5883
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.079719903043361e-5
allele num: 37130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4068
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.561e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

DP
type: SiteQuality
SIO_000300: 1.026472e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 5957
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20924
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1010
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2280
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variant carriers: 0

GenotypeDepth
all individuals: 82
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 513
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variant carriers: 0

GenotypeDepth
all individuals: 922
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variant carriers: 0

GenotypeDepth
all individuals: 166
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variant carriers: 0

GenotypeDepth
all individuals: 294
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variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5762
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5418
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variant carriers: 0

GenotypeQuality
all individuals: 5881
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 311
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variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.279881217520415e-5
allele num: 10776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.104e0

QD
type: SiteQuality
SIO_000300: 1.11e1

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.352e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

DP
type: SiteQuality
SIO_000300: 1.024232e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

GenotypeDepth
all individuals: 10658
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5690
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variant carriers: 0

GenotypeDepth
all individuals: 7440
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variant carriers: 0

GenotypeDepth
all individuals: 939
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variant carriers: 0

GenotypeDepth
all individuals: 1691
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 8923
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variant carriers: 0

GenotypeDepth
all individuals: 2876
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variant carriers: 0

GenotypeDepth
all individuals: 728
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variant carriers: 0

GenotypeDepth
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 2800
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26102
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.993e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 2.665251e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.268e1

GenotypeDepth
all individuals: 1248
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 728
bin: 8.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2125
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 5690
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 1252
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1691
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
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SIO_000300: 5.993e1

DP
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SIO_000300: 2.665251e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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InbreedingCoeff
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.661613e6

BaseQRankSum
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SIO_000300: 4.03e0

ReadPosRankSum
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SIO_000300: -5.09e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
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SIO_000300: 2.660979e6

InbreedingCoeff
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SIO_000300: 1.0e-4

MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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African
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Latino
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DP
type: SiteQuality
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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MQ
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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East Asian
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Other
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Latino
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European (Non-Finnish)
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allele num: 66740
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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MQ
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

Latino
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South Asian
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African
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East Asian
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European (Finnish)
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Other
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VQSLOD
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DP
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MQ
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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SIO_000300: 9.02e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.497211728728189e-5
allele num: 66708
num of homozygotes: 0

East Asian
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European (Finnish)
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allele num: 6614
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South Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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FS
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SIO_000300: 1.746e2

DP
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

Other
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MQRankSum
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SIO_000300: 4.61e-1

VQSLOD
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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SIO_000300: -6.65e-1

ReadPosRankSum
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QD
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SIO_000300: 1.369e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 5.094396164219358e-4
allele num: 66740
num of homozygotes: 0

African
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South Asian
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East Asian
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allele num: 8654
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Other
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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Latino
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East Asian
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FS
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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QD
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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African
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European (Finnish)
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Other
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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Latino
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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FS
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DP
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MQ
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Latino
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East Asian
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European (Finnish)
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African
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
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DP
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South Asian
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African
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European (Non-Finnish)
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Latino
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ReadPosRankSum
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FS
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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East Asian
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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SIO_000300: -1.791e0

VQSLOD
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DP
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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East Asian
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South Asian
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allele count: 0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 5.965e1

QD
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SIO_000300: 9.43e0

MQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

African
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Latino
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66678
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InbreedingCoeff
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FS
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MQ
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QD
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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Latino
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East Asian
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Other
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South Asian
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African
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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African
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Latino
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South Asian
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European (Non-Finnish)
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Other
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.621813e6

MQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.214e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

GenotypeDepth
all individuals: 1698
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 432
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variant carriers: 0

GenotypeDepth
all individuals: 1252
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 1105
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5469
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.214e1

MQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 2.621813e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

GenotypeDepth
all individuals: 345
bin: 1.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000840235265874e-5
allele num: 66648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.620685e6

FS
type: SiteQuality
SIO_000300: 1.401e0

VQSLOD
type: SiteQuality
SIO_000300: -2.838e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.603e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.26e-1

QD
type: SiteQuality
SIO_000300: 6.46e0

GenotypeDepth
all individuals: 4206
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 80
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GenotypeQuality
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GenotypeQuality
all individuals: 10021
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25995
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variant carriers: 2

GenotypeQuality
all individuals: 2708
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.48e0

QD
type: SiteQuality
SIO_000300: 1.553e1

FS
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 2.615384e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeDepth
all individuals: 4217
bin: 5.25e1
variant carriers: 192

GenotypeDepth
all individuals: 1112
bin: 9.75e1
variant carriers: 135

GenotypeDepth
all individuals: 594
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variant carriers: 4

GenotypeDepth
all individuals: 1251
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variant carriers: 86

GenotypeDepth
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variant carriers: 179

GenotypeDepth
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variant carriers: 112

GenotypeDepth
all individuals: 9187
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variant carriers: 69

GenotypeDepth
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variant carriers: 27

GenotypeDepth
all individuals: 928
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variant carriers: 70

GenotypeDepth
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variant carriers: 52

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26396
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variant carriers: 1765

GenotypeQuality
all individuals: 4535
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 37
allele frequency: 3.204573012298631e-3
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.183484468454563e-3
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 186
allele frequency: 1.12781954887218e-2
allele num: 16492
num of homozygotes: 1

East Asian
type: Population
allele count: 9
allele frequency: 1.044083526682135e-3
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 168
allele frequency: 2.543912780133253e-2
allele num: 6604
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1343
allele frequency: 2.016092713243462e-2
allele num: 66614
num of homozygotes: 20

Other
type: Population
allele count: 19
allele frequency: 2.097130242825607e-2
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.8e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

DP
type: SiteQuality
SIO_000300: 2.611718e6

QD
type: SiteQuality
SIO_000300: 1.481e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 308
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25385
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variant carriers: 5

South Asian
type: Population
allele count: 2
allele frequency: 1.213150551983501e-4
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003453972067878e-5
allele num: 66590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.337e1

DP
type: SiteQuality
SIO_000300: 2.561967e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeDepth
all individuals: 4134
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2631
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GenotypeQuality
all individuals: 328
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 8.5e-1

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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MQRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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African
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allele frequency: 3.861003861003861e-4
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South Asian
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.737451737451737e-3
allele num: 10360
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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FS
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DP
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SIO_000300: 2.557417e6

ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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SIO_000300: 1.1e-3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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African
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65386
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.265664160401002e-5
allele num: 15960
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65442
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.219846909212894e-4
allele num: 65582
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: -1.88e-1

FS
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SIO_000300: 9.506e0

BaseQRankSum
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SIO_000300: 3.03e0

VQSLOD
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DP
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MQ
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InbreedingCoeff
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SIO_000300: -4.0e-4

ClippingRankSum
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SIO_000300: -1.55e-1

ReadPosRankSum
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QD
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SIO_000300: 1.326e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520681265206813e-5
allele num: 65760
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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FS
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DP
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QD
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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European (Finnish)
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MQ
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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QD
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MQRankSum
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.846426043878273e-5
allele num: 11304
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.396e0

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.936e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.88e-1

DP
type: SiteQuality
SIO_000300: 1.874714e6

MQ
type: SiteQuality
SIO_000300: 5.835e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.574e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.342e1

GenotypeDepth
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bin: 2.5e0
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.052536012589275e-5
allele num: 66088
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
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SIO_000300: 5.51e-1

VQSLOD
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MQ
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SIO_000300: 5.956e1

ClippingRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.879e0

QD
type: SiteQuality
SIO_000300: 1.194e1

ReadPosRankSum
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SIO_000300: 6.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.879193e6

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76242509693338e-4
allele num: 11348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.887117e6

MQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

VQSLOD
type: SiteQuality
SIO_000300: -5.819e-1

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50952510340247e-5
allele num: 66246
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.733e0

VQSLOD
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SIO_000300: 1.92e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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ClippingRankSum
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SIO_000300: -8.06e-1

QD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
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SIO_000300: 1.888043e6

ReadPosRankSum
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SIO_000300: 1.33e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.952229299363058e-5
allele num: 10048
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.834e1

FS
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MQRankSum
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele num: 16228
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: 4.33e-1

MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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FS
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 408
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 441
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 383
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 504
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7429
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 605
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 546
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 591
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6439
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66134
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.324500232450023e-4
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.026e1

VQSLOD
type: SiteQuality
SIO_000300: -1.749e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

FS
type: SiteQuality
SIO_000300: 1.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.88866e6