16-31487552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487552
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487552
    reference: chr 16
allele count: 1
allele frequency: 9.057314687341498e-6
allele num: 110408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*613+46G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.837+46G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*404+46G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*559+46G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2136+46G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.837+46G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3545G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000569703
  gene symbol: TGFB1I1
  hgvsc: ENST00000569703.1:n.948G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.837+46G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.888+46G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

16-31487759-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487759
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487759
    reference: chr 16
allele count: 2
allele frequency: 2.505888838771112e-5
allele num: 79812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-43G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3752G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-43G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-43G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-43G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-43G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-43G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-43G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-43G>C
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

16-31487761-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487761
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487761
    reference: chr 16
allele count: 1
allele frequency: 1.247691770225084e-5
allele num: 80148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-41A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3754A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-41A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-41A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-41A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-41A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-41A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-41A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-41A>G
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-31487764-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487764
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487764
    reference: chr 16
allele count: 4
allele frequency: 4.968944099378882e-5
allele num: 80500
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-38C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-38C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-38C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-38C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-38C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-38C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3757C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-38C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-38C>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16636
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10778
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11369
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-31487764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487764
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487764
    reference: chr 16
allele count: 208
allele frequency: 2.583850931677018e-3
allele num: 80500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-38C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-38C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-38C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-38C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3757C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-38C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-38C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-38C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-38C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10778
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 1.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16636
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4898
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 4
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-31487767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487767
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487767
    reference: chr 16
allele count: 38
allele frequency: 4.694255713403335e-4
allele num: 80950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3760G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-35G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-35G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-35G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-35G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-35G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-35G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-35G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-35G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16711
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16036
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4795
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

16-31487770-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487770
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487770
    reference: chr 16
allele count: 1
allele frequency: 1.224529780564263e-5
allele num: 81664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-32G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-32G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-32G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-32G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-32G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3763G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-32G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-32G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-32G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13781
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4686
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

16-31487776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487776
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487776
    reference: chr 16
allele count: 2
allele frequency: 2.395094845755892e-5
allele num: 83504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-26G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-26G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-26G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-26G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-26G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3769G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-26G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-26G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-26G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12917
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-31487786-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487786
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487786
    reference: chr 16
allele count: 1
allele frequency: 1.128133390492092e-5
allele num: 88642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-16C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-16C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-16C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-16C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3779C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-16C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-16C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-16C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-16C>G
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26751
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-31487787-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487787
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487787
    reference: chr 16
allele count: 1
allele frequency: 1.119219232663294e-5
allele num: 89348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-15T>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-15T>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-15T>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3780T>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-15T>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-15T>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-15T>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-15T>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-15T>C
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

16-31487793-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487793
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487793
    reference: chr 16
allele count: 1
allele frequency: 1.073721734275345e-5
allele num: 93134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-9T>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-9T>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-9T>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-9T>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-9T>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-9T>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-9T>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-9T>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3786T>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/16-31487794-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487794
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487794
    reference: chr 16
allele count: 2
allele frequency: 2.136067499732992e-5
allele num: 93630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-8C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-8C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-8C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-8C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-8C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-8C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-8C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-8C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3787C>A
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
hgvs: c.889-8C>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

16-31487794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487794
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487794
    reference: chr 16
allele count: 13
allele frequency: 1.388443874826444e-4
allele num: 93630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-8C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-8C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-8C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-8C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-8C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-8C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-8C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-8C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3787C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12741
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28567
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
hgvs: c.889-8C>T
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

16-31487795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487795
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487795
    reference: chr 16
allele count: 2
allele frequency: 2.123999065440411e-5
allele num: 94162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.838-7C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.889-7C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*560-7C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*405-7C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2137-7C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3788C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.838-7C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*614-7C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.838-7C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28955
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 3.25e1
  variant carriers: 0
hgvs: c.889-7C>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

16-31487813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487813
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487813
    reference: chr 16
allele count: 446
allele frequency: 4.327156301542641e-3
allele num: 103070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.849C>T
  hgvsp: ENST00000361773.3:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.900C>T
  hgvsp: ENST00000394863.3:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.849C>T
  hgvsp: ENST00000394858.2:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*571C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*625C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2148C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*416C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.849C>T
  hgvsp: ENST00000567607.1:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3806C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9158
  bin: 2.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 34436
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 8490
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.75e1
  variant carriers: 2
hgvs: p.Thr300Thr
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

16-31487831-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487831
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487831
    reference: chr 16
allele count: 1
allele frequency: 9.233610341643583e-6
allele num: 108300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.867G>C
  hgvsp: ENSP00000355117.3:p.Trp289Cys
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2166G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.867G>C
  hgvsp: ENSP00000378327.2:p.Trp289Cys
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.867G>C
  hgvsp: ENSP00000457586.1:p.Trp289Cys
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*643G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.918G>C
  hgvsp: ENSP00000378332.3:p.Trp306Cys
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*434G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3824G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*589G>C
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp306Cys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-31487832-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487832
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487831
    reference: chr 16
allele count: 1
allele frequency: 9.222199679067451e-6
allele num: 108434
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2168delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3826delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*645delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*436delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.869delA
  hgvsp: ENSP00000378327.2:p.His290ProfsTer106
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.920delA
  hgvsp: ENSP00000378332.3:p.His307ProfsTer106
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*591delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.869delA
  hgvsp: ENSP00000457586.1:p.His290ProfsTer106
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.869delA
  hgvsp: ENSP00000355117.3:p.His290ProfsTer106
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His307ProfsTer106
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: CA
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-31487834-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487834
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487834
    reference: chr 16
allele count: 2
allele frequency: 1.836075205640423e-5
allele num: 108928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*437C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3827C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2169C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*592C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.921C>G
  hgvsp: ENSP00000378332.3:p.His307Gln
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.870C>G
  hgvsp: ENSP00000378327.2:p.His290Gln
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.870C>G
  hgvsp: ENSP00000355117.3:p.His290Gln
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*646C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.870C>G
  hgvsp: ENSP00000457586.1:p.His290Gln
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His307Gln
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

16-31487842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487842
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487842
    reference: chr 16
allele count: 1
allele frequency: 9.12225648136323e-6
allele num: 109622
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.929A>G
  hgvsp: ENSP00000378332.3:p.His310Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.878A>G
  hgvsp: ENSP00000355117.3:p.His293Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.878A>G
  hgvsp: ENSP00000457586.1:p.His293Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.878A>G
  hgvsp: ENSP00000378327.2:p.His293Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*600A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3835A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2177A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*445A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*654A>G
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10963
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6497
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His310Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-31487849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487849
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487849
    reference: chr 16
allele count: 1
allele frequency: 9.147289658074313e-6
allele num: 109322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.885C>T
  hgvsp: ENST00000567607.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*452C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.885C>T
  hgvsp: ENST00000361773.3:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*607C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3842C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*661C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.936C>T
  hgvsp: ENST00000394863.3:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.885C>T
  hgvsp: ENST00000394858.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2184C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys312Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

16-31487853-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487853
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487853
    reference: chr 16
allele count: 1
allele frequency: 9.187292137515388e-6
allele num: 108846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.889G>T
  hgvsp: ENSP00000355117.3:p.Val297Phe
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*611G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2188G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*665G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.889G>T
  hgvsp: ENSP00000378327.2:p.Val297Phe
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3846G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.940G>T
  hgvsp: ENSP00000378332.3:p.Val314Phe
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.889G>T
  hgvsp: ENSP00000457586.1:p.Val297Phe
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*456G>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35983
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val314Phe
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

16-31487864-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487864
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487864
    reference: chr 16
allele count: 2
allele frequency: 1.883522941309425e-5
allele num: 106184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*467G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2199G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.951G>C
  hgvsp: ENST00000394863.3:c.951G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.900G>C
  hgvsp: ENST00000394858.2:c.900G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*622G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*676G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.900G>C
  hgvsp: ENST00000361773.3:c.900G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3857G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.900G>C
  hgvsp: ENST00000567607.1:c.900G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly317Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS

16-31487867-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487867
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487867
    reference: chr 16
allele count: 1
allele frequency: 9.422051369024064e-6
allele num: 106134
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.954G>C
  hgvsp: ENSP00000378332.3:p.Glu318Asp
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2202G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3860G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*679G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.903G>C
  hgvsp: ENSP00000355117.3:p.Glu301Asp
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*625G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.903G>C
  hgvsp: ENSP00000378327.2:p.Glu301Asp
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.903G>C
  hgvsp: ENSP00000457586.1:p.Glu301Asp
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*470G>C
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32263
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu318Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

16-31487874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487874
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487874
    reference: chr 16
allele count: 1
allele frequency: 9.577993601900274e-6
allele num: 104406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*632G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.910G>A
  hgvsp: ENSP00000457586.1:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.961G>A
  hgvsp: ENSP00000378332.3:p.Gly321Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*686G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*477G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.910G>A
  hgvsp: ENSP00000378327.2:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2209G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3867G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.910G>A
  hgvsp: ENSP00000355117.3:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly321Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

16-31487883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487883
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487883
    reference: chr 16
allele count: 1
allele frequency: 9.872447972199186e-6
allele num: 101292
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970G>A
  hgvsp: ENSP00000378332.3:p.Gly324Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2218G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919G>A
  hgvsp: ENSP00000378327.2:p.Gly307Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919G>A
  hgvsp: ENSP00000457586.1:p.Gly307Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919G>A
  hgvsp: ENSP00000355117.3:p.Gly307Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3876G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9487
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly324Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-31487895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487895
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487895
    reference: chr 16
allele count: 3
allele frequency: 3.115458907097015e-5
allele num: 96294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2230C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+12C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+12C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+12C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+12C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+12C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3888C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+12C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+12C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

16-31487909-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487909
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487909
    reference: chr 16
allele count: 5
allele frequency: 5.630630630630631e-5
allele num: 88800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+26T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+26T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+26T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+26T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+26T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3902T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2244T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+26T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+26T>G
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

16-31487909-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487909
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487908
    reference: chr 16
allele count: 1
allele frequency: 1.126126126126126e-5
allele num: 88800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+30delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3906delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+30delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+30delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+30delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+30delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+30delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+30delA
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2248delA
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: TA
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

16-31487915-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487915
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487915
    reference: chr 16
allele count: 1
allele frequency: 1.188156456442184e-5
allele num: 84164
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+32C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2250C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+32C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3908C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+32C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+32C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+32C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+32C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+32C>G
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6218
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

16-31487915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487915
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487915
    reference: chr 16
allele count: 1
allele frequency: 1.188156456442184e-5
allele num: 84164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2250C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+32C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+32C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+32C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+32C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3908C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+32C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+32C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+32C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20534
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

16-31487918-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487918
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487918
    reference: chr 16
allele count: 2
allele frequency: 2.51806713166973e-5
allele num: 79426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+35C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+35C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+35C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+35C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3911C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+35C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2253C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+35C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+35C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6533
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

16-31487923-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487923
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487923
    reference: chr 16
allele count: 1
allele frequency: 1.284818583615994e-5
allele num: 77832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+40C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3916C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+40C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+40C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+40C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2258C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+40C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+40C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+40C>G
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18397
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5859
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5065
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

16-31487924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487924
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487924
    reference: chr 16
allele count: 203
allele frequency: 2.647365675534689e-3
allele num: 76680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+41C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2259C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+41C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+41C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+41C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+41C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3917C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+41C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+41C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16490
  bin: 7.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 1.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5903
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6686
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 4
num of homozygotes: 4
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

16-31487927-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487927
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487927
    reference: chr 16
allele count: 84
allele frequency: 1.139075721414624e-3
allele num: 73744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+44T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+44T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+44T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+44T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3920T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+44T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+44T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2262T>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+44T>G
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16993
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 17698
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4896
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-31487930-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487930
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487930
    reference: chr 16
allele count: 2
allele frequency: 2.738000711880185e-5
allele num: 73046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+47A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+47A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2265A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+47A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3923A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+47A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+47A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+47A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+47A>G
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16650
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5021
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3965
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5959
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/16-31487931-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31487931
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31487931
    reference: chr 16
allele count: 2
allele frequency: 2.777932107339297e-5
allele num: 71996
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.970+48C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000568142
  gene symbol: TGFB1I1
  hgvsc: ENST00000568142.2:n.2266C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*641+48C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.919+48C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.3924C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.919+48C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*486+48C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*695+48C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.919+48C>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16380
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-31488139-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488139
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488139
    reference: chr 16
allele count: 5
allele frequency: 4.837180504227696e-5
allele num: 103366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-44C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-44C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4132C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-44C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-44C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-44C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-44C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-44C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19024
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10598
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4251
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/16-31488143-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488143
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488143
    reference: chr 16
allele count: 2
allele frequency: 1.928156874843337e-5
allele num: 103726
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-40C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-40C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-40C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-40C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4136C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-40C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-40C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-40C>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9587
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

16-31488144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488144
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488144
    reference: chr 16
allele count: 3
allele frequency: 2.90320707608338e-5
allele num: 103334
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-39G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-39G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-39G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4137G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-39G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-39G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-39G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-39G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23071
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

16-31488149-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488149
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488149
    reference: chr 16
allele count: 4
allele frequency: 3.840319514583613e-5
allele num: 104158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-34C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-34C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-34C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-34C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4142C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-34C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-34C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-34C>G
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26137
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

16-31488154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488154
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488154
    reference: chr 16
allele count: 41
allele frequency: 3.923069562721271e-4
allele num: 104510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-29C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-29C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4147C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-29C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-29C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-29C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-29C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-29C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12843
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27224
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34948
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-31488161-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488161
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488161
    reference: chr 16
allele count: 1
allele frequency: 9.561326347190882e-6
allele num: 104588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-22C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-22C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4154C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-22C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-22C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-22C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-22C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-22C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/16-31488167-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488167
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488167
    reference: chr 16
allele count: 1
allele frequency: 9.530707940985856e-6
allele num: 104924
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-16C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-16C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-16C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-16C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4160C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-16C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-16C>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-16C>A
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13751
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-31488169-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488169
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488168
    reference: chr 16
allele count: 1
allele frequency: 9.515472157728467e-6
allele num: 105092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4164delT
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-12delT
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-12delT
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-12delT
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-12delT
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-12delT
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-12delT
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-12delT
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28591
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: GT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

16-31488174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488174
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488174
    reference: chr 16
allele count: 2
allele frequency: 1.904544242562755e-5
allele num: 105012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*696-9C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.971-9C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.920-9C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*487-9C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.920-9C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4167C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.920-9C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*642-9C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

16-31488190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488190
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488190
    reference: chr 16
allele count: 3
allele frequency: 2.881014116969173e-5
allele num: 104130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.927C>T
  hgvsp: ENST00000394858.2:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.927C>T
  hgvsp: ENST00000361773.3:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*494C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*703C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.978C>T
  hgvsp: ENST00000394863.3:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.927C>T
  hgvsp: ENST00000567607.1:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*649C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4183C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His326His
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

16-31488191-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488191
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488191
    reference: chr 16
allele count: 1
allele frequency: 9.624083306065098e-6
allele num: 103906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*495G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.928G>C
  hgvsp: ENSP00000457586.1:p.Glu310Gln
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4184G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.928G>C
  hgvsp: ENSP00000378327.2:p.Glu310Gln
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.928G>C
  hgvsp: ENSP00000355117.3:p.Glu310Gln
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.979G>C
  hgvsp: ENSP00000378332.3:p.Glu327Gln
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*704G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*650G>C
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26903
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu327Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-31488191-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488191
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488191
    reference: chr 16
allele count: 1
allele frequency: 9.624083306065098e-6
allele num: 103906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4184G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.928G>T
  hgvsp: ENSP00000355117.3:p.Glu310Ter
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.979G>T
  hgvsp: ENSP00000378332.3:p.Glu327Ter
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*650G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*495G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.928G>T
  hgvsp: ENSP00000378327.2:p.Glu310Ter
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.928G>T
  hgvsp: ENSP00000457586.1:p.Glu310Ter
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*704G>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu327Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-31488192-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488192
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488192
    reference: chr 16
allele count: 1
allele frequency: 9.615384615384616e-6
allele num: 104000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.929A>G
  hgvsp: ENSP00000457586.1:p.Glu310Gly
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4185A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.929A>G
  hgvsp: ENSP00000355117.3:p.Glu310Gly
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.980A>G
  hgvsp: ENSP00000378332.3:p.Glu327Gly
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.929A>G
  hgvsp: ENSP00000378327.2:p.Glu310Gly
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*496A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*651A>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*705A>G
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu327Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-31488194-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488194
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488194
    reference: chr 16
allele count: 2
allele frequency: 1.933039511327611e-5
allele num: 103464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*707C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*653C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.931C>G
  hgvsp: ENSP00000457586.1:p.Arg311Gly
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.931C>G
  hgvsp: ENSP00000355117.3:p.Arg311Gly
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.931C>G
  hgvsp: ENSP00000378327.2:p.Arg311Gly
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4187C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*498C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.982C>G
  hgvsp: ENSP00000378332.3:p.Arg328Gly
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14630
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg328Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

16-31488196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488196
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488196
    reference: chr 16
allele count: 2
allele frequency: 1.934423058322855e-5
allele num: 103390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.933C>T
  hgvsp: ENST00000361773.3:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.933C>T
  hgvsp: ENST00000567607.1:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*709C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.933C>T
  hgvsp: ENST00000394858.2:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.984C>T
  hgvsp: ENST00000394863.3:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*500C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4189C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*655C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14726
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg328Arg
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

16-31488199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488199
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488199
    reference: chr 16
allele count: 1
allele frequency: 9.685042420485801e-6
allele num: 103252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.936G>A
  hgvsp: ENST00000361773.3:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.987G>A
  hgvsp: ENST00000394863.3:c.987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*712G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.936G>A
  hgvsp: ENST00000394858.2:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*503G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.936G>A
  hgvsp: ENST00000567607.1:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*658G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4192G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu329Glu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-31488205-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488205
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488205
    reference: chr 16
allele count: 2
allele frequency: 1.967342120794806e-5
allele num: 101660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*664C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*509C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*718C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.942C>T
  hgvsp: ENST00000567607.1:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.993C>T
  hgvsp: ENST00000394863.3:c.993C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.942C>T
  hgvsp: ENST00000361773.3:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.942C>T
  hgvsp: ENST00000394858.2:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4198C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15322
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg331Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

16-31488213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488213
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488213
    reference: chr 16
allele count: 2
allele frequency: 2.006299781313324e-5
allele num: 99686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.950G>A
  hgvsp: ENSP00000457586.1:p.Cys317Tyr
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.950G>A
  hgvsp: ENSP00000355117.3:p.Cys317Tyr
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*726G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1001G>A
  hgvsp: ENSP00000378332.3:p.Cys334Tyr
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.950G>A
  hgvsp: ENSP00000378327.2:p.Cys317Tyr
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*672G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*517G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4206G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Cys334Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

16-31488216-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488216
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488216
    reference: chr 16
allele count: 2
allele frequency: 2.018896874747638e-5
allele num: 99064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.953G>C
  hgvsp: ENSP00000378327.2:p.Arg318Pro
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4209G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.953G>C
  hgvsp: ENSP00000355117.3:p.Arg318Pro
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*675G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.953G>C
  hgvsp: ENSP00000457586.1:p.Arg318Pro
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*729G>C
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1004G>C
  hgvsp: ENSP00000378332.3:p.Arg335Pro
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*520G>C
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13069
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg335Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-31488217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488217
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488217
    reference: chr 16
allele count: 1
allele frequency: 1.013048058999919e-5
allele num: 98712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.954C>T
  hgvsp: ENST00000394858.2:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*676C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1005C>T
  hgvsp: ENST00000394863.3:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*730C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4210C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.954C>T
  hgvsp: ENST00000361773.3:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*521C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.954C>T
  hgvsp: ENST00000567607.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29585
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg335Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

16-31488220-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488220
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488220
    reference: chr 16
allele count: 3
allele frequency: 3.062974761087968e-5
allele num: 97944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.957G>T
  hgvsp: ENST00000361773.3:c.957G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*733G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.957G>T
  hgvsp: ENST00000567607.1:c.957G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1008G>T
  hgvsp: ENST00000394863.3:c.1008G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4213G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*679G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*524G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.957G>T
  hgvsp: ENST00000394858.2:c.957G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20520
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg336Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

16-31488223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488223
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488223
    reference: chr 16
allele count: 1
allele frequency: 1.035282425045552e-5
allele num: 96592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.960C>T
  hgvsp: ENST00000361773.3:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4216C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*527C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*736C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*682C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.960C>T
  hgvsp: ENST00000567607.1:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1011C>T
  hgvsp: ENST00000394863.3:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.960C>T
  hgvsp: ENST00000394858.2:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp337Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

16-31488240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488240
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488240
    reference: chr 16
allele count: 6
allele frequency: 6.705259158266467e-5
allele num: 89482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*544C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.977C>T
  hgvsp: ENSP00000378327.2:p.Ala326Val
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.977C>T
  hgvsp: ENSP00000355117.3:p.Ala326Val
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4233C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*753C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*699C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1028C>T
  hgvsp: ENSP00000378332.3:p.Ala343Val
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.977C>T
  hgvsp: ENSP00000457586.1:p.Ala326Val
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14510
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10896
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19102
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala343Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-31488243-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488243
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488243
    reference: chr 16
allele count: 2
allele frequency: 2.25377507324769e-5
allele num: 88740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*547C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4236C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.980C>T
  hgvsp: ENSP00000457586.1:p.Pro327Leu
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*702C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.980C>T
  hgvsp: ENSP00000355117.3:p.Pro327Leu
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.980C>T
  hgvsp: ENSP00000378327.2:p.Pro327Leu
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*756C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1031C>T
  hgvsp: ENSP00000378332.3:p.Pro344Leu
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14244
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro344Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-31488254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488254
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488254
    reference: chr 16
allele count: 2
allele frequency: 2.407608041410858e-5
allele num: 83070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*767G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*558G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*713G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1042G>A
  hgvsp: ENSP00000378332.3:p.Gly348Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4247G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.991G>A
  hgvsp: ENSP00000378327.2:p.Gly331Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.991G>A
  hgvsp: ENSP00000457586.1:p.Gly331Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.991G>A
  hgvsp: ENSP00000355117.3:p.Gly331Ser
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly348Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-31488266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488266
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488266
    reference: chr 16
allele count: 1
allele frequency: 1.273852895467631e-5
allele num: 78502
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1054C>T
  hgvsp: ENSP00000378332.3:p.Pro352Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1003C>T
  hgvsp: ENSP00000457586.1:p.Pro335Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*570C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*779C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1003C>T
  hgvsp: ENSP00000355117.3:p.Pro335Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1003C>T
  hgvsp: ENSP00000378327.2:p.Pro335Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*725C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4259C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro352Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-31488272-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488272
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488272
    reference: chr 16
allele count: 1
allele frequency: 1.313853268866933e-5
allele num: 76112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*576C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1009C>G
  hgvsp: ENSP00000378327.2:p.Leu337Val
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1060C>G
  hgvsp: ENSP00000378332.3:p.Leu354Val
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*731C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*785C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1009C>G
  hgvsp: ENSP00000457586.1:p.Leu337Val
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1009C>G
  hgvsp: ENSP00000355117.3:p.Leu337Val
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4265C>G
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu354Val
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

16-31488292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488292
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488292
    reference: chr 16
allele count: 5
allele frequency: 7.807376409231441e-5
allele num: 64042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1029G>A
  hgvsp: ENST00000361773.3:c.1029G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4285G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1029G>A
  hgvsp: ENST00000567607.1:c.1029G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1080G>A
  hgvsp: ENST00000394863.3:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*751G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*805G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1029G>A
  hgvsp: ENST00000394858.2:c.1029G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*596G>A
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15265
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30804
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala360Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-31488293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488293
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488293
    reference: chr 16
allele count: 1
allele frequency: 1.557050323866467e-5
allele num: 64224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*806C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*597C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1081C>T
  hgvsp: ENSP00000378332.3:p.Leu361Phe
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1030C>T
  hgvsp: ENSP00000457586.1:p.Leu344Phe
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1030C>T
  hgvsp: ENSP00000378327.2:p.Leu344Phe
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4286C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*752C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1030C>T
  hgvsp: ENSP00000355117.3:p.Leu344Phe
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15214
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu361Phe
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

16-31488297-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488297
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488297
    reference: chr 16
allele count: 1
allele frequency: 1.6149349181228e-5
allele num: 61922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1034G>T
  hgvsp: ENSP00000355117.3:p.Ser345Ile
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1034G>T
  hgvsp: ENSP00000457586.1:p.Ser345Ile
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*601G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4290G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1085G>T
  hgvsp: ENSP00000378332.3:p.Ser362Ile
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*810G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*756G>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1034G>T
  hgvsp: ENSP00000378327.2:p.Ser345Ile
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5752
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser362Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-31488304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488304
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488304
    reference: chr 16
allele count: 1
allele frequency: 1.690102758247702e-5
allele num: 59168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1041C>T
  hgvsp: ENST00000361773.3:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*608C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1041C>T
  hgvsp: ENST00000567607.1:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1041C>T
  hgvsp: ENST00000394858.2:c.1041C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1092C>T
  hgvsp: ENST00000394863.3:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*763C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4297C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*817C>T
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6451
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu364Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-31488311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488311
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488311
    reference: chr 16
allele count: 2
allele frequency: 3.589504289457626e-5
allele num: 55718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*615C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1048C>T
  hgvsp: ENSP00000378327.2:p.Pro350Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4304C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1048C>T
  hgvsp: ENSP00000457586.1:p.Pro350Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*824C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1048C>T
  hgvsp: ENSP00000355117.3:p.Pro350Ser
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*770C>T
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1099C>T
  hgvsp: ENSP00000378332.3:p.Pro367Ser
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15099
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro367Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

16-31488312-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488312
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488312
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 54078
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1100C>G
  hgvsp: ENSP00000378332.3:p.Pro367Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4305C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*616C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1049C>G
  hgvsp: ENSP00000378327.2:p.Pro350Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1049C>G
  hgvsp: ENSP00000355117.3:p.Pro350Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1049C>G
  hgvsp: ENSP00000457586.1:p.Pro350Arg
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*771C>G
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*825C>G
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro367Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-31488314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31488314
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 31488314
    reference: chr 16
allele count: 7
allele frequency: 1.298026998961578e-4
allele num: 53928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140682
  ensembl transcript: ENST00000564176
  gene symbol: TGFB1I1
  hgvsc: ENST00000564176.1:n.4307G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000454688
  ensembl transcript: ENST00000564804
  gene symbol: TGFB1I1
  hgvsc: ENST00000564804.1:c.*618G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000457586
  ensembl transcript: ENST00000567607
  gene symbol: TGFB1I1
  hgvsc: ENST00000567607.1:c.1051G>A
  hgvsp: ENSP00000457586.1:p.Asp351Asn
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378332
  ensembl transcript: ENST00000394863
  gene symbol: TGFB1I1
  hgvsc: ENST00000394863.3:c.1102G>A
  hgvsp: ENSP00000378332.3:p.Asp368Asn
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000456341
  ensembl transcript: ENST00000567066
  gene symbol: TGFB1I1
  hgvsc: ENST00000567066.2:c.*827G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000378327
  ensembl transcript: ENST00000394858
  gene symbol: TGFB1I1
  hgvsc: ENST00000394858.2:c.1051G>A
  hgvsp: ENSP00000378327.2:p.Asp351Asn
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000459283
  ensembl transcript: ENST00000563712
  gene symbol: TGFB1I1
  hgvsc: ENST00000563712.2:c.*773G>A
  variant of: http://identifiers.org/hgnc/11767
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140682
  ensembl protein: ENSP00000355117
  ensembl transcript: ENST00000361773
  gene symbol: TGFB1I1
  hgvsc: ENST00000361773.3:c.1051G>A
  hgvsp: ENSP00000355117.3:p.Asp351Asn
  variant of: http://identifiers.org/hgnc/11767
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24263
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp368Asn
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

GenotypeQuality
all individuals: 1380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4673
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3801
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23897
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.328154770628756e-5
allele num: 13646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 2.273111e6

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

VQSLOD
type: SiteQuality
SIO_000300: 9.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

FS
type: SiteQuality
SIO_000300: 3.518e0

QD
type: SiteQuality
SIO_000300: 1.105e1

GenotypeQuality
all individuals: 278
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5023
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2788
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7255
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5625
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2293
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9381
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3442
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.579098067287044e-4
allele num: 5588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.259e1

FS
type: SiteQuality
SIO_000300: 1.715e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.72653e5

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
all individuals: 7219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4986
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 946
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5012
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.605851979345956e-5
allele num: 11620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46440
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

DP
type: SiteQuality
SIO_000300: 8.81031e5

VQSLOD
type: SiteQuality
SIO_000300: -1.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.557e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 8.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15736
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4898
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7112
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.146106961970985e-5
allele num: 46596
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.315379163713678e-4
allele num: 5644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.297e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

DP
type: SiteQuality
SIO_000300: 8.93154e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.196e0

GenotypeQuality
all individuals: 5239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 15736
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1739
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11369
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2054
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2841
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 9.75e1
variant carriers: 199

GenotypeQuality
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.146106961970985e-5
allele num: 46596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

African
type: Population
allele count: 198
allele frequency: 2.64e-2
allele num: 7500
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.76678445229682e-3
allele num: 5094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.93154e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

QD
type: SiteQuality
SIO_000300: 1.297e1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.196e0

GenotypeQuality
all individuals: 16223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1626
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4791
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 9.75e1
variant carriers: 37

GenotypeQuality
all individuals: 1279
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6791
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1620
bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.137026114459119e-5
allele num: 46794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 4.635761589403974e-3
allele num: 7550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11700
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.85951370127364e-4
allele num: 5182
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 9.13499e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 6535
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16509
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14881
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.316135825217162e-4
allele num: 7598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5266
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.104e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

DP
type: SiteQuality
SIO_000300: 9.28424e5

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.066e0

GenotypeQuality
all individuals: 1983
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19794
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 713
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.146624647536905e-5
allele num: 48232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.906e0

FS
type: SiteQuality
SIO_000300: 6.767e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

DP
type: SiteQuality
SIO_000300: 9.83988e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
all individuals: 1303
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1171
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51094
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.565925461948011e-4
allele num: 6386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

DP
type: SiteQuality
SIO_000300: 1.077555e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

FS
type: SiteQuality
SIO_000300: 2.139e0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.546e1

GenotypeQuality
all individuals: 86
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.941219862561634e-5
allele num: 51514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 1.657e0

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
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QD
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SIO_000300: 1.437e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.076e0

InbreedingCoeff
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SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.085947e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.885191610156126e-5
allele num: 12682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4144
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.075e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

DP
type: SiteQuality
SIO_000300: 1.139824e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

QD
type: SiteQuality
SIO_000300: 3.063e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.707411114818522e-5
allele num: 53946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.117e0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 1.148034e6

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

GenotypeQuality
all individuals: 679
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variant carriers: 0

GenotypeQuality
all individuals: 13419
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GenotypeQuality
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GenotypeQuality
all individuals: 980
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53946
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.019767806714779e-3
allele num: 12748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6672
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.117e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

DP
type: SiteQuality
SIO_000300: 1.148034e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

QD
type: SiteQuality
SIO_000300: 1.062e1

GenotypeQuality
all individuals: 170
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variant carriers: 0

GenotypeQuality
all individuals: 1145
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 237
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.194172438500119e-4
allele num: 8374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.845018450184502e-5
allele num: 54200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.02e-2

QD
type: SiteQuality
SIO_000300: 8.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

DP
type: SiteQuality
SIO_000300: 1.155299e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 639
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GenotypeQuality
all individuals: 1597
bin: 9.75e1
variant carriers: 439

Latino
type: Population
allele count: 25
allele frequency: 2.768549280177187e-3
allele num: 9030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 384
allele frequency: 6.550441813653577e-3
allele num: 58622
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.366120218579235e-3
allele num: 732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 6.592440668033988e-4
allele num: 13652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.909393183707398e-3
allele num: 4812
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.467931345980127e-3
allele num: 8856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

DP
type: SiteQuality
SIO_000300: 1.265986e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 43167
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.083188908145581e-4
allele num: 9232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14278
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.096e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 5.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.322359e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.79e-1

GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 577
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GenotypeQuality
all individuals: 573
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GenotypeQuality
all individuals: 839
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GenotypeQuality
all individuals: 716
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.999860002799944e-5
allele num: 14286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61014
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.072e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.84e-1

DP
type: SiteQuality
SIO_000300: 1.324549e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.82e0

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.156566745740781e-4
allele num: 9274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 5.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.824e0

DP
type: SiteQuality
SIO_000300: 1.328755e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.719e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.257545271629779e-4
allele num: 7952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

FS
type: SiteQuality
SIO_000300: 1.657e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.658e0

DP
type: SiteQuality
SIO_000300: 1.336149e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.263902932254803e-4
allele num: 7912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61334
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.797e-1

FS
type: SiteQuality
SIO_000300: 1.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.333084e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.421e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.402e0

QD
type: SiteQuality
SIO_000300: 9.94e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.893153937475267e-5
allele num: 10108
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.631e0

FS
type: SiteQuality
SIO_000300: 1.956e0

VQSLOD
type: SiteQuality
SIO_000300: -2.554e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 6.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

DP
type: SiteQuality
SIO_000300: 1.324536e6

GenotypeQuality
all individuals: 10186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.338675213675214e-5
allele num: 59904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.831e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.281602e6

FS
type: SiteQuality
SIO_000300: 1.0482e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.128599942971201e-5
allele num: 14028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.776e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.246e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.281239e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.694226077527785e-5
allele num: 59024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13862
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9206
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.249996e6

MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 6.489e0

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -2.9e-3

ClippingRankSum
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VQSLOD
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33014
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13582
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.15233924867481e-4
allele num: 8678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.459e0

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 4.915e0

DP
type: SiteQuality
SIO_000300: 1.194247e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
all individuals: 552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.284148012791229e-4
allele num: 13134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.935e1

DP
type: SiteQuality
SIO_000300: 1.089885e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

FS
type: SiteQuality
SIO_000300: 3.498e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

MQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

QD
type: SiteQuality
SIO_000300: 1.222e1

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.285355122564425e-4
allele num: 6364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.003841844085161e-5
allele num: 12494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 4.851e0

DP
type: SiteQuality
SIO_000300: 9.44873e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.179e1

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.972230987693279e-5
allele num: 50704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.851e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

DP
type: SiteQuality
SIO_000300: 9.44873e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.179e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.237232289950576e-5
allele num: 12140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48178
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.661e0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e-1

FS
type: SiteQuality
SIO_000300: 2.919e0

DP
type: SiteQuality
SIO_000300: 8.86827e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

GenotypeQuality
all individuals: 393
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 512
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.661129568106312e-4
allele num: 6020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48178
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 8.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.661e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.919e0

DP
type: SiteQuality
SIO_000300: 8.86827e5

GenotypeQuality
all individuals: 5049
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.377517072316582e-5
allele num: 45688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.782e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

DP
type: SiteQuality
SIO_000300: 8.5509e5

VQSLOD
type: SiteQuality
SIO_000300: -4.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 4.821e0

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 468
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.373626373626374e-4
allele num: 7280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11674
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.469e1

DP
type: SiteQuality
SIO_000300: 8.32552e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 191

GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 685
bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1689
bin: 4.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.521613311629589e-5
allele num: 44232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3106
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 2.147766323024055e-3
allele num: 4656
num of homozygotes: 0

African
type: Population
allele count: 191
allele frequency: 2.66016713091922e-2
allele num: 7180
num of homozygotes: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.412e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.26491e5

GenotypeQuality
all individuals: 5985
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4427
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 756
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3837
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1257
bin: 9.75e1
variant carriers: 87

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4925
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4259
bin: 6.25e1
variant carriers: 1

African
type: Population
allele count: 2
allele frequency: 2.875215641173088e-4
allele num: 6956
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.676245210727969e-3
allele num: 4176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 68
allele frequency: 1.595569946970764e-3
allele num: 42618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.136044880785414e-4
allele num: 11408
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.13093e5

FS
type: SiteQuality
SIO_000300: 8.05e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
all individuals: 357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4910
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
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variant carriers: 0

GenotypeQuality
all individuals: 15220
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variant carriers: 0

GenotypeQuality
all individuals: 6693
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 486
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variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.897710808461316e-4
allele num: 6902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.184e0

DP
type: SiteQuality
SIO_000300: 8.08277e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.46e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4907
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5916
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variant carriers: 0

GenotypeQuality
all individuals: 6659
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 356
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GenotypeQuality
all individuals: 5776
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variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 4.75e1
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GenotypeQuality
all individuals: 1175
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variant carriers: 3

GenotypeQuality
all individuals: 176
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14361
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variant carriers: 0

GenotypeQuality
all individuals: 268
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variant carriers: 0

GenotypeQuality
all individuals: 4048
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41612
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.042864346949068e-4
allele num: 3966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.702e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.0685e5

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.314e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 369
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3999
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variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 1693
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variant carriers: 0

GenotypeQuality
all individuals: 7671
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variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.875319511502414e-5
allele num: 56336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14956
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.711e0

QD
type: SiteQuality
SIO_000300: 1.54e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

DP
type: SiteQuality
SIO_000300: 1.131598e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7939
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
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variant carriers: 0

GenotypeQuality
all individuals: 265
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variant carriers: 0

GenotypeQuality
all individuals: 481
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variant carriers: 0

GenotypeQuality
all individuals: 29638
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variant carriers: 0

GenotypeQuality
all individuals: 2342
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variant carriers: 0

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 704
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1419
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.281722635221738e-4
allele num: 7802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.769535673839185e-5
allele num: 56512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.564e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.160988e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
all individuals: 208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
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variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
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variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 679
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variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3209
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.550001775000888e-5
allele num: 56338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10788
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.292323597828896e-4
allele num: 7738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

FS
type: SiteQuality
SIO_000300: 1.287e0

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.16974e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.023e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.74e0

GenotypeQuality
all individuals: 300
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 4.25e1
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GenotypeQuality
all individuals: 959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8100
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GenotypeQuality
all individuals: 33789
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variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.045974986788797e-5
allele num: 56770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15040
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

DP
type: SiteQuality
SIO_000300: 1.197442e6

FS
type: SiteQuality
SIO_000300: 8.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.611e0

GenotypeQuality
all individuals: 4752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 7.5e0
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GenotypeQuality
all individuals: 237
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
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GenotypeQuality
all individuals: 73
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 40
allele frequency: 5.06842372022301e-3
allele num: 7892
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.358695652173913e-3
allele num: 736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15088
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.212682e6

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.255e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.047e0

FS
type: SiteQuality
SIO_000300: 1.919e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
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GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4815
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GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 1268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.756234632946962e-5
allele num: 56940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.507e0

DP
type: SiteQuality
SIO_000300: 1.227951e6

QD
type: SiteQuality
SIO_000300: 1.152e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.232e0

VQSLOD
type: SiteQuality
SIO_000300: 9.93e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.751252145283878e-5
allele num: 57102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5228
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 4.308e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.354e1

DP
type: SiteQuality
SIO_000300: 1.2388e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.258178158027177e-4
allele num: 7948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10876
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.243588e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

QD
type: SiteQuality
SIO_000300: 1.089e1

FS
type: SiteQuality
SIO_000300: 3.528e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

MQ
type: SiteQuality
SIO_000300: 6.047e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 768
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.499317633061553e-5
allele num: 57154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15206
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 1.247482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 3.934e0

VQSLOD
type: SiteQuality
SIO_000300: -6.751e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

QD
type: SiteQuality
SIO_000300: 1.989e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.288766659614978e-5
allele num: 56724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.06e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 6.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.587e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

DP
type: SiteQuality
SIO_000300: 1.241095e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.766160367361356e-5
allele num: 56620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

FS
type: SiteQuality
SIO_000300: 3.675e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

DP
type: SiteQuality
SIO_000300: 1.238431e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.281603861147207e-5
allele num: 10774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 3.675e0

DP
type: SiteQuality
SIO_000300: 1.238431e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.279099513942185e-4
allele num: 7818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56656
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.96e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.473e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.4e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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allele num: 15114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56344
num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 2
allele frequency: 2.552974214960429e-4
allele num: 7834
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.234227e6

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.286e0

BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15108
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.550127804600966e-5
allele num: 56336
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.083e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.23382e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10722
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7790
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.776262034175282e-5
allele num: 56298
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4908
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14828
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.311303435615001e-4
allele num: 7626
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10580
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.802451333813987e-5
allele num: 55480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

FS
type: SiteQuality
SIO_000300: 1.384e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

DP
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SIO_000300: 1.21339e6

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.861e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.672015569346014e-5
allele num: 54466
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14580
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7452
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.034e0

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

FS
type: SiteQuality
SIO_000300: 8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

DP
type: SiteQuality
SIO_000300: 1.182523e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.696311081540623e-5
allele num: 54108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.461e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 3.4e-2

BaseQRankSum
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SIO_000300: 2.19e0

VQSLOD
type: SiteQuality
SIO_000300: -1.505e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.85349940688019e-5
allele num: 53952
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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Other
type: Population
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53520
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Latino
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African
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allele frequency: 4.102844638949672e-4
allele num: 7312
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FS
type: SiteQuality
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QD
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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Other
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MQ
type: SiteQuality
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DP
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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allele count: 6
allele frequency: 1.226291693917593e-4
allele num: 48928
num of homozygotes: 0

Latino
type: Population
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Other
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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SIO_000300: -2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 1.12e1

DP
type: SiteQuality
SIO_000300: 1.03628e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.062706270627063e-5
allele num: 48480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.378984651711924e-5
allele num: 13552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.029566e6

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

FS
type: SiteQuality
SIO_000300: 5.467e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

QD
type: SiteQuality
SIO_000300: 1.084e1

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1189
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.204293964643125e-5
allele num: 45366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3484
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.668711656441718e-5
allele num: 13040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.808e1

MQ
type: SiteQuality
SIO_000300: 5.855e1

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.748e0

DP
type: SiteQuality
SIO_000300: 9.61738e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.096e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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variant carriers: 1

GenotypeQuality
all individuals: 902
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.337759491303535e-5
allele num: 42776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 7.06e0

DP
type: SiteQuality
SIO_000300: 9.17685e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.804e0

VQSLOD
type: SiteQuality
SIO_000300: -7.905e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 1658
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.063215610385422e-5
allele num: 12402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41494
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.033e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.277e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 7.49e0

DP
type: SiteQuality
SIO_000300: 8.94807e5

FS
type: SiteQuality
SIO_000300: 5.806e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.409948844593403e-4
allele num: 11338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2260
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

QD
type: SiteQuality
SIO_000300: 1.242e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.689e0

FS
type: SiteQuality
SIO_000300: 9.292999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 7.69975e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.53e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.67e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 191
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.567889620570712e-4
allele num: 6378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4744
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.185e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

FS
type: SiteQuality
SIO_000300: 5.434e0

DP
type: SiteQuality
SIO_000300: 7.67994e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.457002457002457e-4
allele num: 4070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.46957e5

VQSLOD
type: SiteQuality
SIO_000300: 8.159999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.077e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e0

QD
type: SiteQuality
SIO_000300: 8.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 243
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.11410864017499e-5
allele num: 10972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 7.23892e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.197e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

GenotypeQuality
all individuals: 813
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variant carriers: 0

GenotypeQuality
all individuals: 1939
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2497
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GenotypeQuality
all individuals: 357
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 8660
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 163
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.724949562878279e-5
allele num: 29740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 9.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.645e0

DP
type: SiteQuality
SIO_000300: 6.95062e5

GenotypeQuality
all individuals: 886
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31767
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

DP
type: SiteQuality
SIO_000300: 6.82229e5

QD
type: SiteQuality
SIO_000300: 9.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 8312
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2383
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.514747859181732e-5
allele num: 10510
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.744186046511628e-3
allele num: 3440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28700
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.02e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1