15-42536227-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536228
    reference: chr 15
allele count: 7216
allele frequency: 8.308769344141488e-2
allele num: 86848
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.657+20dupT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.622+20dupT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.439+20dupT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.199+20dupT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*387+20dupT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.199+20dupT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.199+20dupT
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 4.25e1
  variant carriers: 689
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.25e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 9333
  bin: 3.25e1
  variant carriers: 1322
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 2.25e1
  variant carriers: 1736
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 2.75e1
  variant carriers: 1613
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 5.25e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 1.75e1
  variant carriers: 1190
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 3.75e1
  variant carriers: 1043
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 4.75e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 8.75e1
  variant carriers: 190
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 4.25e1
  variant carriers: 546
genotype quality: GenotypeQuality
  all individuals: 9396
  bin: 2.5e0
  variant carriers: 390
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 4.75e1
  variant carriers: 495
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 437
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 1.75e1
  variant carriers: 687
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 7.5e0
  variant carriers: 528
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 636
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 408
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 6.75e1
  variant carriers: 276
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-42536227-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536229
    reference: chr 15
allele count: 52
allele frequency: 5.98747236551216e-4
allele num: 86848
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*387+19_*387+20dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.199+19_199+20dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.199+19_199+20dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.439+19_439+20dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.657+19_657+20dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.199+19_199+20dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.622+19_622+20dupTT
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9333
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9396
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 5
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

15-42536227-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536226
    reference: chr 15
allele count: 393
allele frequency: 4.525147383935151e-3
allele num: 86848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.199+20delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.657+20delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*387+20delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.199+20delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.622+20delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.199+20delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.439+20delT
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 2.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9333
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 2.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 3.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 1.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 7.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 9396
  bin: 2.5e0
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.25e1
  variant carriers: 7
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TA
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

15-42536237-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536237
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536237
    reference: chr 15
allele count: 1
allele frequency: 8.372544751251695e-6
allele num: 119438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.199+11T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.199+11T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.622+11T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*387+11T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.657+11T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.439+11T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.199+11T>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8393
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-42536238-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536238
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536238
    reference: chr 15
allele count: 2
allele frequency: 1.677008217340265e-5
allele num: 119260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*387+10G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.199+10G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.199+10G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.622+10G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.657+10G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.439+10G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.199+10G>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-42536250-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536250
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536250
    reference: chr 15
allele count: 1
allele frequency: 8.342092530490349e-6
allele num: 119874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.197C>A
  hgvsp: ENSP00000454539.1:p.Thr66Asn
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.620C>A
  hgvsp: ENSP00000374484.4:p.Thr207Asn
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.197C>A
  hgvsp: ENSP00000455343.1:p.Thr66Asn
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.655C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*385C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.197C>A
  hgvsp: ENSP00000457874.1:p.Thr66Asn
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.437C>A
  hgvsp: ENSP00000405379.1:p.Thr146Asn
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr207Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

15-42536252-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536252
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536252
    reference: chr 15
allele count: 1
allele frequency: 8.335973058135075e-6
allele num: 119962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.195T>C
  hgvsp: ENST00000568400.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*383T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.195T>C
  hgvsp: ENST00000563371.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.653T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.435T>C
  hgvsp: ENST00000448392.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.195T>C
  hgvsp: ENST00000561578.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.618T>C
  hgvsp: ENST00000389834.4:c.618T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe206Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

15-42536254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536254
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536254
    reference: chr 15
allele count: 12
allele frequency: 9.996168135548041e-5
allele num: 120046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.193T>C
  hgvsp: ENSP00000457874.1:p.Phe65Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.651T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.193T>C
  hgvsp: ENSP00000454539.1:p.Phe65Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.433T>C
  hgvsp: ENSP00000405379.1:p.Phe145Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.616T>C
  hgvsp: ENSP00000374484.4:p.Phe206Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.193T>C
  hgvsp: ENSP00000455343.1:p.Phe65Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*381T>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22775
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe206Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-42536259-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536259
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536259
    reference: chr 15
allele count: 1
allele frequency: 8.318775476249896e-6
allele num: 120210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.188A>G
  hgvsp: ENSP00000454539.1:p.Asn63Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.646A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.188A>G
  hgvsp: ENSP00000455343.1:p.Asn63Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.428A>G
  hgvsp: ENSP00000405379.1:p.Asn143Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.188A>G
  hgvsp: ENSP00000457874.1:p.Asn63Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*376A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.611A>G
  hgvsp: ENSP00000374484.4:p.Asn204Ser
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn204Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

15-42536265-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536265
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536265
    reference: chr 15
allele count: 2
allele frequency: 1.661709234118214e-5
allele num: 120358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.182T>A
  hgvsp: ENSP00000455343.1:p.Leu61Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.640T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.605T>A
  hgvsp: ENSP00000374484.4:p.Leu202Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.182T>A
  hgvsp: ENSP00000454539.1:p.Leu61Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*370T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.182T>A
  hgvsp: ENSP00000457874.1:p.Leu61Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.422T>A
  hgvsp: ENSP00000405379.1:p.Leu141Gln
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu202Gln
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-42536269-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536269
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536269
    reference: chr 15
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.178T>A
  hgvsp: ENSP00000455343.1:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.601T>A
  hgvsp: ENSP00000374484.4:p.Ser201Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.178T>A
  hgvsp: ENSP00000457874.1:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.636T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*366T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.178T>A
  hgvsp: ENSP00000454539.1:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.418T>A
  hgvsp: ENSP00000405379.1:p.Ser140Thr
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser201Thr
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

15-42536278-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536278
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536278
    reference: chr 15
allele count: 1
allele frequency: 8.291598951941893e-6
allele num: 120604
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.592A>G
  hgvsp: ENSP00000374484.4:p.Lys198Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.169A>G
  hgvsp: ENSP00000455343.1:p.Lys57Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.627A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.409A>G
  hgvsp: ENSP00000405379.1:p.Lys137Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.169A>G
  hgvsp: ENSP00000457874.1:p.Lys57Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.169A>G
  hgvsp: ENSP00000454539.1:p.Lys57Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*357A>G
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys198Glu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-42536280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536280
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536280
    reference: chr 15
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.167C>T
  hgvsp: ENSP00000454539.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.167C>T
  hgvsp: ENSP00000455343.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.407C>T
  hgvsp: ENSP00000405379.1:p.Ser136Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.590C>T
  hgvsp: ENSP00000374484.4:p.Ser197Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*355C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.167C>T
  hgvsp: ENSP00000457874.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.625C>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser197Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-42536282-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536282
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536282
    reference: chr 15
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.165A>C
  hgvsp: ENST00000561578.1:c.165A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.623A>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*353A>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.165A>C
  hgvsp: ENST00000568400.1:c.165A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.405A>C
  hgvsp: ENST00000448392.1:c.405A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.165A>C
  hgvsp: ENST00000563371.1:c.165A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.588A>C
  hgvsp: ENST00000389834.4:c.588A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22988
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser196Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

15-42536287-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536287
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536287
    reference: chr 15
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.160G>C
  hgvsp: ENSP00000455343.1:p.Glu54Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.400G>C
  hgvsp: ENSP00000405379.1:p.Glu134Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.160G>C
  hgvsp: ENSP00000457874.1:p.Glu54Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.583G>C
  hgvsp: ENSP00000374484.4:p.Glu195Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.160G>C
  hgvsp: ENSP00000454539.1:p.Glu54Gln
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.618G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*348G>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu195Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-42536292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536292
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536292
    reference: chr 15
allele count: 1
allele frequency: 8.279653579294243e-6
allele num: 120778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.155C>T
  hgvsp: ENSP00000455343.1:p.Ser52Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.155C>T
  hgvsp: ENSP00000457874.1:p.Ser52Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.395C>T
  hgvsp: ENSP00000405379.1:p.Ser132Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.155C>T
  hgvsp: ENSP00000454539.1:p.Ser52Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.578C>T
  hgvsp: ENSP00000374484.4:p.Ser193Leu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.613C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*343C>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5731
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser193Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

15-42536295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536295
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536295
    reference: chr 15
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.152C>T
  hgvsp: ENSP00000457874.1:p.Ser51Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.610C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.152C>T
  hgvsp: ENSP00000454539.1:p.Ser51Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.152C>T
  hgvsp: ENSP00000455343.1:p.Ser51Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.575C>T
  hgvsp: ENSP00000374484.4:p.Ser192Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.392C>T
  hgvsp: ENSP00000405379.1:p.Ser131Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*340C>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser192Phe
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-42536302-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536302
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536302
    reference: chr 15
allele count: 6
allele frequency: 4.964585953531475e-5
allele num: 120856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.385A>G
  hgvsp: ENSP00000405379.1:p.Ile129Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.145A>G
  hgvsp: ENSP00000454539.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.568A>G
  hgvsp: ENSP00000374484.4:p.Ile190Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.145A>G
  hgvsp: ENSP00000455343.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*333A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.145A>G
  hgvsp: ENSP00000457874.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.603A>G
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23228
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5730
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile190Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

15-42536303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536303
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536303
    reference: chr 15
allele count: 2
allele frequency: 1.655218074981379e-5
allele num: 120830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.144C>T
  hgvsp: ENST00000568400.1:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.384C>T
  hgvsp: ENST00000448392.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.567C>T
  hgvsp: ENST00000389834.4:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*332C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.144C>T
  hgvsp: ENST00000561578.1:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.602C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.144C>T
  hgvsp: ENST00000563371.1:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8460
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly189Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-42536304-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536304
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536304
    reference: chr 15
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.143G>T
  hgvsp: ENSP00000455343.1:p.Gly48Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.143G>T
  hgvsp: ENSP00000457874.1:p.Gly48Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.383G>T
  hgvsp: ENSP00000405379.1:p.Gly128Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.601G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*331G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.143G>T
  hgvsp: ENSP00000454539.1:p.Gly48Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.566G>T
  hgvsp: ENSP00000374484.4:p.Gly189Val
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9947
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly189Val
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-42536307-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536307
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536307
    reference: chr 15
allele count: 4
allele frequency: 3.309285856112251e-5
allele num: 120872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*328T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.140T>C
  hgvsp: ENSP00000455343.1:p.Ile47Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.140T>C
  hgvsp: ENSP00000457874.1:p.Ile47Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.563T>C
  hgvsp: ENSP00000374484.4:p.Ile188Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.598T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.140T>C
  hgvsp: ENSP00000454539.1:p.Ile47Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.380T>C
  hgvsp: ENSP00000405379.1:p.Ile127Thr
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile188Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-42536320-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536320
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536320
    reference: chr 15
allele count: 2
allele frequency: 1.654341820106871e-5
allele num: 120894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.585T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.127T>G
  hgvsp: ENSP00000454539.1:p.Phe43Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.127T>G
  hgvsp: ENSP00000455343.1:p.Phe43Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.127T>G
  hgvsp: ENSP00000457874.1:p.Phe43Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*315T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.367T>G
  hgvsp: ENSP00000405379.1:p.Phe123Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.550T>G
  hgvsp: ENSP00000374484.4:p.Phe184Val
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe184Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ

15-42536344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536344
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536344
    reference: chr 15
allele count: 2
allele frequency: 1.655574318731168e-5
allele num: 120804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.561A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.343A>G
  hgvsp: ENSP00000405379.1:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.526A>G
  hgvsp: ENSP00000374484.4:p.Thr176Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.103A>G
  hgvsp: ENSP00000454539.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.103A>G
  hgvsp: ENSP00000457874.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.103A>G
  hgvsp: ENSP00000455343.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*291A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.103A>G
  hgvsp: ENSP00000454278.1:p.Thr35Ala
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8282
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr176Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

15-42536350-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536350
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536350
    reference: chr 15
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.97T>C
  hgvsp: ENST00000561578.1:c.97T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.97T>C
  hgvsp: ENST00000568400.1:c.97T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.337T>C
  hgvsp: ENST00000448392.1:c.337T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*285T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.97T>C
  hgvsp: ENST00000563371.1:c.97T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.520T>C
  hgvsp: ENST00000389834.4:c.520T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.97T>C
  hgvsp: ENST00000566474.1:c.97T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.555T>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23508
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu174Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-42536354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536354
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536354
    reference: chr 15
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.93A>G
  hgvsp: ENST00000563371.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.551A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*281A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.516A>G
  hgvsp: ENST00000389834.4:c.516A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.93A>G
  hgvsp: ENST00000561578.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.93A>G
  hgvsp: ENST00000568400.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.93A>G
  hgvsp: ENST00000566474.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.333A>G
  hgvsp: ENST00000448392.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu172Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

15-42536358-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536358
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536358
    reference: chr 15
allele count: 3
allele frequency: 2.485871961021528e-5
allele num: 120682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.329A>G
  hgvsp: ENSP00000405379.1:p.His110Arg
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.89A>G
  hgvsp: ENSP00000454539.1:p.His30Arg
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.89A>G
  hgvsp: ENSP00000457874.1:p.His30Arg
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.89A>G
  hgvsp: ENSP00000455343.1:p.His30Arg
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.89A>G
  hgvsp: ENSP00000454278.1:p.His30Arg
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.512A>G
  hgvsp: ENSP00000374484.4:p.His171Arg
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.547A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*277A>G
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His171Arg
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

15-42536362-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536362
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536362
    reference: chr 15
allele count: 5
allele frequency: 4.14545575140531e-5
allele num: 120614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.85A>G
  hgvsp: ENSP00000455343.1:p.Met29Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.508A>G
  hgvsp: ENSP00000374484.4:p.Met170Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.85A>G
  hgvsp: ENSP00000457874.1:p.Met29Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.325A>G
  hgvsp: ENSP00000405379.1:p.Met109Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.85A>G
  hgvsp: ENSP00000454539.1:p.Met29Val
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*273A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.543A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.85A>G
  hgvsp: ENSP00000454278.1:p.Met29Val
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8140
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5714
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Met170Val
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-42536381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536381
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536381
    reference: chr 15
allele count: 1
allele frequency: 8.320021299254527e-6
allele num: 120192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.540-16C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.82-16C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.322-16C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.82-16C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.82-16C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.505-16C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*270-16C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.82-16C>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22942
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-42536383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536383
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536383
    reference: chr 15
allele count: 2
allele frequency: 1.664779916095092e-5
allele num: 120136
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.505-18G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.82-18G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.322-18G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*270-18G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.540-18G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.82-18G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.82-18G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.82-18G>A
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14738
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5695
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

15-42536385-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536385
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536385
    reference: chr 15
allele count: 1
allele frequency: 8.32639467110741e-6
allele num: 120100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.82-20A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.540-20A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*270-20A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.82-20A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.82-20A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.322-20A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.505-20A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.82-20A>G
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32002
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

15-42536388-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536388
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536388
    reference: chr 15
allele count: 1
allele frequency: 8.332638946754437e-6
allele num: 120010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.322-23G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.82-23G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.82-23G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.82-23G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*270-23G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.505-23G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.540-23G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.82-23G>A
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13873
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-42536399-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536399
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536399
    reference: chr 15
allele count: 1
allele frequency: 8.348639171814994e-6
allele num: 119780
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.505-34G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.540-34G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.82-34G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.82-34G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.322-34G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*270-34G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.82-34G>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.82-34G>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

15-42536411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42536411
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42536411
    reference: chr 15
allele count: 1
allele frequency: 8.389543273264204e-6
allele num: 119196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.540-46C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.505-46C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.322-46C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.82-46C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.82-46C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*270-46C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.82-46C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.82-46C>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4567
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

15-42551130-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42551130
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42551130
    reference: chr 15
allele count: 1
allele frequency: 4.635638791025404e-5
allele num: 21572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+2026C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+2026C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+2026C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+2026C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+2026C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.*17C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.*17C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+2026C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+2026C>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+2026C>A
  variant of: http://identifiers.org/hgnc/24522
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

15-42551137-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42551137
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42551137
    reference: chr 15
allele count: 1
allele frequency: 4.629200999907416e-5
allele num: 21602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+2019A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.*10A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+2019A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+2019A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+2019A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.*10A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+2019A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+2019A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+2019A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+2019A>T
  variant of: http://identifiers.org/hgnc/24522
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

15-42551155-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42551155
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42551155
    reference: chr 15
allele count: 1
allele frequency: 4.617231507987811e-5
allele num: 21658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+2001G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.538G>A
  hgvsp: ENSP00000305894.6:p.Asp180Asn
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+2001G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.115G>A
  hgvsp: ENSP00000456940.1:p.Asp39Asn
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+2001G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+2001G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+2001G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+2001G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+2001G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+2001G>A
  variant of: http://identifiers.org/hgnc/24522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp39Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

15-42551193-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42551193
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42551193
    reference: chr 15
allele count: 19
allele frequency: 8.775981524249423e-4
allele num: 21650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+1963C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+1963C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+1963C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.82-5C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+1963C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.505-5C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+1963C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+1963C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+1963C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+1963C>G
  variant of: http://identifiers.org/hgnc/24522
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: c.82-5C>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

15-42551210-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42551210
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42551210
    reference: chr 15
allele count: 2
allele frequency: 9.251549634563789e-5
allele num: 21618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+1946C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.505-22C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+1946C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+1946C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+1946C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+1946C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+1946C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+1946C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+1946C>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.82-22C>G
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

15-42551236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42551236
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42551236
    reference: chr 15
allele count: 1
allele frequency: 4.651595497255559e-5
allele num: 21498
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+1920T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.505-48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+1920T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+1920T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+1920T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+1920T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+1920T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+1920T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.82-48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+1920T>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

15-42553108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553108
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553108
    reference: chr 15
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.504+48C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.81+48C>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-42553111-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553111
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553111
    reference: chr 15
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.504+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.81+45T>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+45T>G
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum

15-42553113-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553113
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553113
    reference: chr 15
allele count: 2
allele frequency: 1.650573574317075e-5
allele num: 121170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.81+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.504+43G>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+43G>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34857
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

15-42553121-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553121
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553121
    reference: chr 15
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.81+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+35A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.504+35A>G
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

15-42553135-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553135
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553135
    reference: chr 15
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.81+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.504+21G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+21G>A
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-42553144-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553144
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553144
    reference: chr 15
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.81+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.504+12T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+12T>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

15-42553147-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553147
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553147
    reference: chr 15
allele count: 3
allele frequency: 2.473370049137618e-5
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.81+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.81+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*269+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.81+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.504+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.504+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.321+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.81+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.539+9A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.81+9A>G
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

15-42553162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553162
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553162
    reference: chr 15
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.315C>T
  hgvsp: ENST00000448392.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.75C>T
  hgvsp: ENST00000561578.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.75C>T
  hgvsp: ENST00000568400.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.498C>T
  hgvsp: ENST00000389834.4:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.75C>T
  hgvsp: ENST00000566474.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*263C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.75C>T
  hgvsp: ENST00000563371.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.533C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.498C>T
  hgvsp: ENST00000307216.6:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.75C>T
  hgvsp: ENST00000568432.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp166Asp
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

15-42553165-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553165
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553165
    reference: chr 15
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.495A>C
  hgvsp: ENST00000307216.6:c.495A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.495A>C
  hgvsp: ENST00000389834.4:c.495A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.72A>C
  hgvsp: ENST00000566474.1:c.72A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.312A>C
  hgvsp: ENST00000448392.1:c.312A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.72A>C
  hgvsp: ENST00000563371.1:c.72A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.72A>C
  hgvsp: ENST00000568432.1:c.72A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.72A>C
  hgvsp: ENST00000561578.1:c.72A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.530A>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.72A>C
  hgvsp: ENST00000568400.1:c.72A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*260A>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly165Gly
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

15-42553166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553166
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553166
    reference: chr 15
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.494G>A
  hgvsp: ENSP00000374484.4:p.Gly165Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.71G>A
  hgvsp: ENSP00000457874.1:p.Gly24Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*259G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.494G>A
  hgvsp: ENSP00000305894.6:p.Gly165Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.311G>A
  hgvsp: ENSP00000405379.1:p.Gly104Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.71G>A
  hgvsp: ENSP00000454539.1:p.Gly24Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.71G>A
  hgvsp: ENSP00000455343.1:p.Gly24Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.71G>A
  hgvsp: ENSP00000454278.1:p.Gly24Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.71G>A
  hgvsp: ENSP00000456940.1:p.Gly24Glu
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.529G>A
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly165Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum

15-42553170-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553170
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553170
    reference: chr 15
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.490A>T
  hgvsp: ENSP00000374484.4:p.Ile164Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.67A>T
  hgvsp: ENSP00000454539.1:p.Ile23Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.67A>T
  hgvsp: ENSP00000457874.1:p.Ile23Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*255A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.490A>T
  hgvsp: ENSP00000305894.6:p.Ile164Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.307A>T
  hgvsp: ENSP00000405379.1:p.Ile103Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.67A>T
  hgvsp: ENSP00000455343.1:p.Ile23Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.67A>T
  hgvsp: ENSP00000454278.1:p.Ile23Phe
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.525A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.67A>T
  hgvsp: ENSP00000456940.1:p.Ile23Phe
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile164Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

15-42553176-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553176
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553176
    reference: chr 15
allele count: 2
allele frequency: 1.648587160803192e-5
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.61A>T
  hgvsp: ENSP00000455343.1:p.Thr21Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*249A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.61A>T
  hgvsp: ENSP00000454278.1:p.Thr21Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.61A>T
  hgvsp: ENSP00000454539.1:p.Thr21Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.484A>T
  hgvsp: ENSP00000305894.6:p.Thr162Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.301A>T
  hgvsp: ENSP00000405379.1:p.Thr101Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.61A>T
  hgvsp: ENSP00000457874.1:p.Thr21Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.484A>T
  hgvsp: ENSP00000374484.4:p.Thr162Ser
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.519A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.61A>T
  hgvsp: ENSP00000456940.1:p.Thr21Ser
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr162Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-42553176-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553176
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553176
    reference: chr 15
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.61A>G
  hgvsp: ENSP00000457874.1:p.Thr21Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.61A>G
  hgvsp: ENSP00000454539.1:p.Thr21Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*249A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.519A>G
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.61A>G
  hgvsp: ENSP00000454278.1:p.Thr21Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.61A>G
  hgvsp: ENSP00000456940.1:p.Thr21Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.484A>G
  hgvsp: ENSP00000374484.4:p.Thr162Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.301A>G
  hgvsp: ENSP00000405379.1:p.Thr101Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.484A>G
  hgvsp: ENSP00000305894.6:p.Thr162Ala
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.61A>G
  hgvsp: ENSP00000455343.1:p.Thr21Ala
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14635
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr162Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

15-42553180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553180
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553180
    reference: chr 15
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.57C>T
  hgvsp: ENST00000563371.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*245C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.515C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.480C>T
  hgvsp: ENST00000389834.4:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.57C>T
  hgvsp: ENST00000561578.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.297C>T
  hgvsp: ENST00000448392.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.480C>T
  hgvsp: ENST00000307216.6:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.57C>T
  hgvsp: ENST00000568400.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.57C>T
  hgvsp: ENST00000566474.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.57C>T
  hgvsp: ENST00000568432.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn160Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

15-42553196-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553196
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553196
    reference: chr 15
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.464A>C
  hgvsp: ENSP00000305894.6:p.Lys155Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.41A>C
  hgvsp: ENSP00000457874.1:p.Lys14Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.464A>C
  hgvsp: ENSP00000374484.4:p.Lys155Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.281A>C
  hgvsp: ENSP00000405379.1:p.Lys94Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.41A>C
  hgvsp: ENSP00000454278.1:p.Lys14Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*229A>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.41A>C
  hgvsp: ENSP00000455343.1:p.Lys14Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.41A>C
  hgvsp: ENSP00000456940.1:p.Lys14Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.41A>C
  hgvsp: ENSP00000454539.1:p.Lys14Thr
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.499A>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys155Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

15-42553211-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553211
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553213
    reference: chr 15
allele count: 3
allele frequency: 3.461884650003462e-5
allele num: 86658
alternate allele: TAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-13_460-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-13_277-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-13_460-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-13_37-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-13_37-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-13_*225-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-13_495-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-13_37-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-13_37-12dupTT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-13_37-12dupTT
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10981
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

15-42553211-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553211
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553210
    reference: chr 15
allele count: 42
allele frequency: 4.846638510004847e-4
allele num: 86658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-12delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-12delT
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10339
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: TA
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-42553217-AAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553215
    reference: chr 15
allele count: 37
allele frequency: 1.398231426196055e-3
allele num: 26462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-19_37-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-19_37-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-19_495-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-19_37-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-19_460-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-19_277-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-19_37-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-19_*225-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-19_37-18delAT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-19_460-18delAT
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: AAT
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

15-42553218-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553218
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553217
    reference: chr 15
allele count: 103488
allele frequency: 9.639703416669771e-1
allele num: 107356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-19delA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-19delA
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10411
  bin: 2.25e1
  variant carriers: 10398
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.25e1
  variant carriers: 939
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 4172
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 625
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 4.75e1
  variant carriers: 1592
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 1.25e1
  variant carriers: 7020
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 2661
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 3.25e1
  variant carriers: 6538
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.75e1
  variant carriers: 8874
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 1194
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 1.75e1
  variant carriers: 9411
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.5e0
  variant carriers: 811
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 424
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.5e0
  variant carriers: 4577
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 7.75e1
  variant carriers: 3077
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 8.25e1
  variant carriers: 2433
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 2291
num of homozygotes: 49990
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: AT
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

15-42553218-ATAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553218
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553214
    reference: chr 15
allele count: 1
allele frequency: 9.314803085062781e-6
allele num: 107356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-22_460-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-22_37-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-22_37-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-22_277-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-22_37-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-22_*225-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-22_37-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-22_37-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-22_460-19delATTA
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-22_495-19delATTA
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: ATAAT
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

15-42553219-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553219
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553219
    reference: chr 15
allele count: 73
allele frequency: 1.762433606953163e-2
allele num: 4142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-19A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-19A>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 32
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

15-42553222-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553222
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553222
    reference: chr 15
allele count: 5
allele frequency: 4.69175190015952e-5
allele num: 106570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-22A>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-22A>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13494
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/15-42553234-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553234
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553233
    reference: chr 15
allele count: 3
allele frequency: 2.981514609421586e-5
allele num: 100620
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-35delT
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-35delT
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12658
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: CA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-42553236-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553236
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553236
    reference: chr 15
allele count: 2
allele frequency: 2.012477359629704e-5
allele num: 99380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-36C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-36C>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

15-42553237-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553237
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553237
    reference: chr 15
allele count: 2
allele frequency: 2.019182231196366e-5
allele num: 99050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-37T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-37T>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-42553244-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553244
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553243
    reference: chr 15
allele count: 1
allele frequency: 1.065802655980219e-5
allele num: 93826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.37-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*225-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.277-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.37-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.37-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.37-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.460-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.37-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.460-45delC
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.495-45delC
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14118
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: TG
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum

15-42553346-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553346
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553346
    reference: chr 15
allele count: 2
allele frequency: 2.000720259293346e-5
allele num: 99964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.459+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.36+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.276+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.459+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*224+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.36+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.494+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.36+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.36+48T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.36+48T>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

15-42553349-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553349
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553349
    reference: chr 15
allele count: 3
allele frequency: 2.99275752678518e-5
allele num: 100242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.276+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.494+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*224+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.459+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.36+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.36+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.36+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.36+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.459+45T>C
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.36+45T>C
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9482
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18040
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10078
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12880
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

15-42553359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553359
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553359
    reference: chr 15
allele count: 1
allele frequency: 9.947279419078881e-6
allele num: 100530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.36+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.276+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.459+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*224+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.36+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.494+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.36+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.36+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.36+35G>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.459+35G>A
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

15-42553361-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553361
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553361
    reference: chr 15
allele count: 1
allele frequency: 9.918273426961835e-6
allele num: 100824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*224+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.276+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.36+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.36+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.494+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.36+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.459+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.36+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.36+33C>T
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.459+33C>T
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-42553363-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42553363
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 42553363
    reference: chr 15
allele count: 1
allele frequency: 9.859599305884209e-6
allele num: 101424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456225
  ensembl transcript: ENST00000569075
  gene symbol: TMEM87A
  hgvsc: ENST00000569075.1:c.*224+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454278
  ensembl transcript: ENST00000566474
  gene symbol: TMEM87A
  hgvsc: ENST00000566474.1:c.36+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000457874
  ensembl transcript: ENST00000561578
  gene symbol: TMEM87A
  hgvsc: ENST00000561578.1:c.36+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000374484
  ensembl transcript: ENST00000389834
  gene symbol: TMEM87A
  hgvsc: ENST00000389834.4:c.459+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000454539
  ensembl transcript: ENST00000568400
  gene symbol: TMEM87A
  hgvsc: ENST00000568400.1:c.36+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl transcript: ENST00000562946
  gene symbol: TMEM87A
  hgvsc: ENST00000562946.1:n.494+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000405379
  ensembl transcript: ENST00000448392
  gene symbol: TMEM87A
  hgvsc: ENST00000448392.1:c.276+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000456940
  ensembl transcript: ENST00000568432
  gene symbol: TMEM87A
  hgvsc: ENST00000568432.1:c.36+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000455343
  ensembl transcript: ENST00000563371
  gene symbol: TMEM87A
  hgvsc: ENST00000563371.1:c.36+31T>A
  variant of: http://identifiers.org/hgnc/24522
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000103978
  ensembl protein: ENSP00000305894
  ensembl transcript: ENST00000307216
  gene symbol: TMEM87A
  hgvsc: ENST00000307216.6:c.459+31T>A
  variant of: http://identifiers.org/hgnc/24522
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3822
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 2520
bin: 3.75e1
variant carriers: 601

GenotypeQuality
all individuals: 2364
bin: 1.25e1
variant carriers: 578

GenotypeQuality
all individuals: 3551
bin: 2.25e1
variant carriers: 672

GenotypeQuality
all individuals: 745
bin: 9.25e1
variant carriers: 153

GenotypeQuality
all individuals: 1734
bin: 7.75e1
variant carriers: 249

GenotypeQuality
all individuals: 10394
bin: 6.25e1
variant carriers: 377

GenotypeQuality
all individuals: 1565
bin: 7.25e1
variant carriers: 277

GenotypeQuality
all individuals: 2785
bin: 3.25e1
variant carriers: 681

GenotypeQuality
all individuals: 5237
bin: 9.75e1
variant carriers: 1055

GenotypeQuality
all individuals: 1237
bin: 8.25e1
variant carriers: 198

European (Finnish)
type: Population
allele count: 58
allele frequency: 9.533201840894149e-3
allele num: 6084
num of homozygotes: 0

Other
type: Population
allele count: 50
allele frequency: 7.692307692307693e-2
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 1936
allele frequency: 2.048243757934829e-1
allele num: 9452
num of homozygotes: 0

African
type: Population
allele count: 434
allele frequency: 5.49645390070922e-2
allele num: 7896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3611
allele frequency: 7.499169297225453e-2
allele num: 48152
num of homozygotes: 0

Latino
type: Population
allele count: 782
allele frequency: 9.908768373035985e-2
allele num: 7892
num of homozygotes: 0

East Asian
type: Population
allele count: 345
allele frequency: 5.132401071109789e-2
allele num: 6722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.13064e6

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

QD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

GenotypeQuality
all individuals: 10394
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2520
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1352
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5237
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 752
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2724
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2223
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1565
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2785
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 745
bin: 9.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.975304968759298e-4
allele num: 6722
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.801317790167258e-4
allele num: 7892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 5.191892340920418e-4
allele num: 48152
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.266464032421479e-4
allele num: 7896
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 2.22175201015658e-3
allele num: 9452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

DP
type: SiteQuality
SIO_000300: 2.13064e6

QD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 10394
bin: 6.25e1
variant carriers: 15

GenotypeQuality
all individuals: 752
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3374
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2364
bin: 1.25e1
variant carriers: 30

GenotypeQuality
all individuals: 1734
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3551
bin: 2.25e1
variant carriers: 29

GenotypeQuality
all individuals: 1352
bin: 5.75e1
variant carriers: 13

GenotypeQuality
all individuals: 2075
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2223
bin: 4.25e1
variant carriers: 18

GenotypeQuality
all individuals: 5237
bin: 9.75e1
variant carriers: 187

East Asian
type: Population
allele count: 37
allele frequency: 5.504314192204701e-3
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.076923076923077e-3
allele num: 650
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.647237709072478e-3
allele num: 7892
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 2.433347439695303e-3
allele num: 9452
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 3.292806484295846e-3
allele num: 7896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 292
allele frequency: 6.064130254195049e-3
allele num: 48152
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 2.13064e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28228
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5720
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.996001599360256e-5
allele num: 10004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.541e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 8.129999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

DP
type: SiteQuality
SIO_000300: 1.82819e6

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

GenotypeQuality
all individuals: 2977
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5715
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15842
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.000800320128051e-4
allele num: 9996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.259e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.887e0

VQSLOD
type: SiteQuality
SIO_000300: -5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 1.830493e6

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
all individuals: 3537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31056
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5724
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3036
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.195786864931847e-5
allele num: 16140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

FS
type: SiteQuality
SIO_000300: 6.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-2

DP
type: SiteQuality
SIO_000300: 1.845193e6

MQ
type: SiteQuality
SIO_000300: 6.037e1

GenotypeQuality
all individuals: 5726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66062
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.897070467141726e-5
allele num: 10104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

DP
type: SiteQuality
SIO_000300: 1.846957e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5734
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.394376016732512e-3
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.848479e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.458e1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

GenotypeQuality
all individuals: 920
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5728
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512035805007863e-5
allele num: 66136
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.94e-1

ClippingRankSum
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SIO_000300: 5.52e-1

QD
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SIO_000300: 1.549e1

MQRankSum
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SIO_000300: -5.1e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.851269e6

FS
type: SiteQuality
SIO_000300: 2.888e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.734906315058987e-4
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 2.894e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

QD
type: SiteQuality
SIO_000300: 1.002e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

DP
type: SiteQuality
SIO_000300: 1.855292e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66226
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.742e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.803e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.856392e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.103e0

VQSLOD
type: SiteQuality
SIO_000300: -5.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.85873e6

QD
type: SiteQuality
SIO_000300: 2.133e1

FS
type: SiteQuality
SIO_000300: 1.028e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 1069
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.243e1

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.619e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.204e0

DP
type: SiteQuality
SIO_000300: 1.859781e6

FS
type: SiteQuality
SIO_000300: 2.648e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 6.025e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.689e0

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.85988e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Latino
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allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele num: 16438
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Other
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allele count: 0
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African
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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allele frequency: 8.676036786395974e-5
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66376
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 5.202011444425178e-4
allele num: 11534
num of homozygotes: 0

FS
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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SIO_000300: -2.67e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
all individuals: 3495
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5725
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2152
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012592637223595e-5
allele num: 66388
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.223e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.121e0

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

DP
type: SiteQuality
SIO_000300: 1.865745e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5723
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1067
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8459
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.241e0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.645e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.07e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

DP
type: SiteQuality
SIO_000300: 1.865544e6

GenotypeQuality
all individuals: 269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5723
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.022282445046673e-5
allele num: 66420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 2.419e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.865553e6

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
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variant carriers: 0

GenotypeQuality
all individuals: 8385
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010869237948996e-5
allele num: 66426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.39e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

FS
type: SiteQuality
SIO_000300: 1.741e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 1.867108e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2911
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5714
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 252
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1063
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variant carriers: 0

GenotypeQuality
all individuals: 905
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variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e0

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

FS
type: SiteQuality
SIO_000300: 1.2054e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

QD
type: SiteQuality
SIO_000300: 1.617e1

DP
type: SiteQuality
SIO_000300: 1.866593e6

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 904
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
all individuals: 124
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5713
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8243
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.525e0

DP
type: SiteQuality
SIO_000300: 1.865672e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 1.726e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.3173e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

GenotypeQuality
all individuals: 5711
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8228
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.864e0

FS
type: SiteQuality
SIO_000300: 1.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 1.864058e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

QD
type: SiteQuality
SIO_000300: 3.229e1

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 233
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
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GenotypeQuality
all individuals: 2120
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.525432933083932e-5
allele num: 66292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.862216e6

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.155e0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 899
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 832
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 2860
bin: 7.25e1
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GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.547625517012348e-5
allele num: 66246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

DP
type: SiteQuality
SIO_000300: 1.859863e6

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

QD
type: SiteQuality
SIO_000300: 1.34e1

FS
type: SiteQuality
SIO_000300: 1.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.742790335151988e-5
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

FS
type: SiteQuality
SIO_000300: 4.467e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.132e1

DP
type: SiteQuality
SIO_000300: 1.830897e6

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeQuality
all individuals: 641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219958521410272e-4
allele num: 16394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.685999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 7.03e0

DP
type: SiteQuality
SIO_000300: 1.824248e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 3177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7559
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5695
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 874
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516806212838248e-5
allele num: 65928
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

QD
type: SiteQuality
SIO_000300: 1.013e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.816808e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31011
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517911353976928e-5
allele num: 65880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.303e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

QD
type: SiteQuality
SIO_000300: 3.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.989e0

DP
type: SiteQuality
SIO_000300: 1.804714e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6744
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3050
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variant carriers: 0

GenotypeQuality
all individuals: 5688
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521236460995497e-5
allele num: 65736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

DP
type: SiteQuality
SIO_000300: 1.7428e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.057e0

VQSLOD
type: SiteQuality
SIO_000300: -5.212e-1

FS
type: SiteQuality
SIO_000300: 2.003e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 2941
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5687
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 328
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variant carriers: 0

GenotypeQuality
all individuals: 2721
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.17e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e-1

DP
type: SiteQuality
SIO_000300: 1.673572e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3963
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 3956
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 508
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GenotypeQuality
all individuals: 103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.150483202945237e-4
allele num: 8692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

FS
type: SiteQuality
SIO_000300: 4.531e0

QD
type: SiteQuality
SIO_000300: 1.379e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 5.32837e5

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
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GenotypeQuality
all individuals: 1060
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 3962
bin: 9.75e1
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GenotypeQuality
all individuals: 130
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 347
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GenotypeQuality
all individuals: 211
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GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 510
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GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.271617497456765e-4
allele num: 7864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.966e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e0

DP
type: SiteQuality
SIO_000300: 5.33673e5

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.274e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

FS
type: SiteQuality
SIO_000300: 4.954e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.556e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 102
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 4
bin: 3.25e1
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 837
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GenotypeQuality
all individuals: 4093
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3961
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 9.25e1
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GenotypeQuality
all individuals: 417
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GenotypeQuality
all individuals: 344
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GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.655493482309125e-4
allele num: 2148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.364e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

DP
type: SiteQuality
SIO_000300: 5.34672e5

GenotypeQuality
all individuals: 4018
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 19

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 18
allele frequency: 2.278481012658228e-3
allele num: 7900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.166666666666667e-3
allele num: 240
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 9.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

DP
type: SiteQuality
SIO_000300: 5.34648e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

GenotypeQuality
all individuals: 217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.535496957403651e-4
allele num: 7888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.30798e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

QD
type: SiteQuality
SIO_000300: 8.59e0

FS
type: SiteQuality
SIO_000300: 1.035e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.150747986191024e-4
allele num: 8690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.477e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

DP
type: SiteQuality
SIO_000300: 5.2262e5

FS
type: SiteQuality
SIO_000300: 1.3695e1

MQ
type: SiteQuality
SIO_000300: 4.013e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.014e0

VQSLOD
type: SiteQuality
SIO_000300: -5.676e-1

QD
type: SiteQuality
SIO_000300: 6.82e0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 495
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variant carriers: 0

GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 217
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3395
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.068e0

QD
type: SiteQuality
SIO_000300: 2.156e1

FS
type: SiteQuality
SIO_000300: 8.180999999999999e0

DP
type: SiteQuality
SIO_000300: 3.281438e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e0

GenotypeQuality
all individuals: 14592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3393
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
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GenotypeQuality
all individuals: 20
bin: 1.75e1
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GenotypeQuality
all individuals: 386
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GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

VQSLOD
type: SiteQuality
SIO_000300: 2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.258e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 3.282787e6

QD
type: SiteQuality
SIO_000300: 1.218e1

MQRankSum
type: SiteQuality
SIO_000300: -1.163e0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
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GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002822653294096e-5
allele num: 66604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.373e0

QD
type: SiteQuality
SIO_000300: 1.549e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

DP
type: SiteQuality
SIO_000300: 3.283974e6

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.25e1
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GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
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GenotypeQuality
all individuals: 1126
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 3358
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3270
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GenotypeQuality
all individuals: 35525
bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.245e1

DP
type: SiteQuality
SIO_000300: 3.287725e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
type: SiteQuality
SIO_000300: 5.424e0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
all individuals: 3336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
all individuals: 1301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 14650
bin: 6.75e1
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GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36060
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.096e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.161e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQ
type: SiteQuality
SIO_000300: 6.018e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.284e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 3.2944e6

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3268
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 7.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.764e0

DP
type: SiteQuality
SIO_000300: 3.295387e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.569e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.596e0

GenotypeQuality
all individuals: 1119
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501260352898812e-5
allele num: 66648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.888e1

FS
type: SiteQuality
SIO_000300: 2.1827e1

VQSLOD
type: SiteQuality
SIO_000300: -2.27e0

DP
type: SiteQuality
SIO_000300: 3.295509e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

MQRankSum
type: SiteQuality
SIO_000300: -7.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 3.295871e6

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.175e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.107e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.13e-1

QD
type: SiteQuality
SIO_000300: 8.81e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: -3.274e0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.295834e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.851e0

VQSLOD
type: SiteQuality
SIO_000300: -1.423e0

MQ
type: SiteQuality
SIO_000300: 6.051e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.29586e6

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.046e1

BaseQRankSum
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SIO_000300: -3.004e0

ClippingRankSum
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SIO_000300: -1.476e0

FS
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MQ
type: SiteQuality
SIO_000300: 6.007e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 3.295757e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999670036296008e-5
allele num: 66674
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.29516e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.47e0

QD
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FS
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
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SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

FS
type: SiteQuality
SIO_000300: 1.703e0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 3.29516e6

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.92e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

MQ
type: SiteQuality
SIO_000300: 6.016e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.867e0

FS
type: SiteQuality
SIO_000300: 4.746e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.785e0

DP
type: SiteQuality
SIO_000300: 3.294728e6

GenotypeQuality
all individuals: 6628
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.117e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 1.475e0

MQ
type: SiteQuality
SIO_000300: 6.047e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

QD
type: SiteQuality
SIO_000300: 1.052e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 3.266615e6

GenotypeQuality
all individuals: 1883
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3102
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1160
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 721
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2438
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 2712
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1693
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.067140730940963e-5
allele num: 48376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.040437823046519e-4
allele num: 6578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

MQ
type: SiteQuality
SIO_000300: 6.03e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 1.899537e6

QD
type: SiteQuality
SIO_000300: 9.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

GenotypeQuality
all individuals: 3082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 453
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2712
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1160
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10981
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 3296
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 5.01432664756447e-3
allele num: 5584
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.325240686479698e-4
allele num: 9556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.805054151624549e-4
allele num: 11080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.033570365470481e-4
allele num: 48376
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.03e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

DP
type: SiteQuality
SIO_000300: 1.899537e6

GenotypeQuality
all individuals: 542
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 8575
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variant carriers: 1

GenotypeQuality
all individuals: 618
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variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 426
bin: 7.5e0
variant carriers: 26

GenotypeQuality
all individuals: 417
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 194
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1316
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 958
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 16

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 3.061849357011635e-4
allele num: 3266
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.2531328320802e-3
allele num: 2394
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.586671955573185e-3
allele num: 5042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 1.724949035596675e-3
allele num: 12754
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.098360655737705e-3
allele num: 244
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.074688796680498e-3
allele num: 964
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.1e-1

DP
type: SiteQuality
SIO_000300: 9.91461e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

MQ
type: SiteQuality
SIO_000300: 6.093e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

FS
type: SiteQuality
SIO_000300: 1.184e0

VQSLOD
type: SiteQuality
SIO_000300: -8.768e-1

GenotypeQuality
all individuals: 2409
bin: 3.25e1
variant carriers: 2405

GenotypeQuality
all individuals: 2197
bin: 9.25e1
variant carriers: 2195

GenotypeQuality
all individuals: 14343
bin: 9.75e1
variant carriers: 14321

GenotypeQuality
all individuals: 434
bin: 2.5e0
variant carriers: 381

GenotypeQuality
all individuals: 3118
bin: 7.25e1
variant carriers: 3116

GenotypeQuality
all individuals: 2516
bin: 2.75e1
variant carriers: 2507

GenotypeQuality
all individuals: 3063
bin: 4.25e1
variant carriers: 3059

GenotypeQuality
all individuals: 1352
bin: 1.25e1
variant carriers: 1346

GenotypeQuality
all individuals: 2269
bin: 8.75e1
variant carriers: 2268

GenotypeQuality
all individuals: 761
bin: 7.5e0
variant carriers: 730

GenotypeQuality
all individuals: 1948
bin: 2.25e1
variant carriers: 1886

GenotypeQuality
all individuals: 3324
bin: 4.75e1
variant carriers: 3323

GenotypeQuality
all individuals: 1594
bin: 1.75e1
variant carriers: 1589

GenotypeQuality
all individuals: 3566
bin: 5.75e1
variant carriers: 3565

GenotypeQuality
all individuals: 3041
bin: 6.75e1
variant carriers: 3025

GenotypeQuality
all individuals: 2992
bin: 5.25e1
variant carriers: 2990

GenotypeQuality
all individuals: 3841
bin: 6.25e1
variant carriers: 3781

Latino
type: Population
allele count: 10821
allele frequency: 9.837272727272727e-1
allele num: 11000
num of homozygotes: 5321

European (Finnish)
type: Population
allele count: 6325
allele frequency: 9.97948879772799e-1
allele num: 6338
num of homozygotes: 3156

South Asian
type: Population
allele count: 13298
allele frequency: 9.314934155225554e-1
allele num: 14276
num of homozygotes: 6183

Other
type: Population
allele count: 832
allele frequency: 9.811320754716981e-1
allele num: 848
num of homozygotes: 408

African
type: Population
allele count: 6783
allele frequency: 8.025319451017511e-1
allele num: 8452
num of homozygotes: 2702

European (Non-Finnish)
type: Population
allele count: 58546
allele frequency: 9.901569476390204e-1
allele num: 59128
num of homozygotes: 28982

East Asian
type: Population
allele count: 6883
allele frequency: 9.410719168717528e-1
allele num: 7314
num of homozygotes: 3238

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 8.8e-1

QD
type: SiteQuality
SIO_000300: 3.401e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 6.086e1

DP
type: SiteQuality
SIO_000300: 1.66898e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.419999999999999e-2

GenotypeQuality
all individuals: 2516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14343
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
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variant carriers: 0

GenotypeQuality
all individuals: 1594
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variant carriers: 0

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.5e0
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GenotypeQuality
all individuals: 3063
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3566
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7314
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.004763239002522e-5
allele num: 14276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 6.086e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.419999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.66898e6

QD
type: SiteQuality
SIO_000300: 3.401e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 370
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 15

GenotypeQuality
all individuals: 164
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variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 23

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 34

GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 1.730103806228374e-2
allele num: 1734
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.102941176470588e-2
allele num: 272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 2.642276422764228e-2
allele num: 1476
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.369668246445498e-3
allele num: 422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

DP
type: SiteQuality
SIO_000300: 9.9608e4

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQ
type: SiteQuality
SIO_000300: 6.085e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

QD
type: SiteQuality
SIO_000300: 4.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.146327237794627e-5
allele num: 58294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15086
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.859593937660852e-4
allele num: 6994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

QD
type: SiteQuality
SIO_000300: 9.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

FS
type: SiteQuality
SIO_000300: 4.959e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.469264e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.797985450475658e-4
allele num: 10722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14706
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.319e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

FS
type: SiteQuality
SIO_000300: 8.960000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.063e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.001e0

QD
type: SiteQuality
SIO_000300: 3.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.653e0

MQRankSum
type: SiteQuality
SIO_000300: -8.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.274623e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14648
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.352329869259135e-4
allele num: 5966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.245544e6

FS
type: SiteQuality
SIO_000300: 2.868e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.580000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 845
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.722869587878337e-5
allele num: 53722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.234764e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.043e1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

FS
type: SiteQuality
SIO_000300: 9.698e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

VQSLOD
type: SiteQuality
SIO_000300: -1.038e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.979492458133734e-5
allele num: 50518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.171211e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.077e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.351834430856068e-4
allele num: 8504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14694
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.264e0

FS
type: SiteQuality
SIO_000300: 2.407e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.047861e6

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.636978579481398e-5
allele num: 53220
num of homozygotes: 0

South Asian
type: Population
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allele num: 14740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.875e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5997
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.785181164337088e-5
allele num: 14738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.422e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.103456e6

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

GenotypeQuality
all individuals: 1518
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 507
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.865254047601283e-5
allele num: 53612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14764
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.111e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.888e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.117724e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 1723
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5017
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6459
bin: 3.25e1
variant carriers: 0