15-64420032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64420032
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64420032
    reference: chr 15
allele count: 4
allele frequency: 3.330835206928137e-5
allele num: 120090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.612+27C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.807+27C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*244+27C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.807+27C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.153+27C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*412+27C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+9667C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.807+27C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11150
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-64420033-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64420033
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64420033
    reference: chr 15
allele count: 1
allele frequency: 8.328058896032513e-6
allele num: 120076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+9668A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.153+28A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.612+28A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.807+28A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.807+28A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*244+28A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*412+28A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.807+28A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

15-64420042-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64420042
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64420042
    reference: chr 15
allele count: 1
allele frequency: 8.353939717970996e-6
allele num: 119704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*244+37A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.807+37A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+9677A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.612+37A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.807+37A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.153+37A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*412+37A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.807+37A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17400
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-64420042-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64420042
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64420042
    reference: chr 15
allele count: 1
allele frequency: 8.353939717970996e-6
allele num: 119704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*244+37A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.612+37A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.153+37A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.807+37A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*412+37A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.807+37A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+9677A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.807+37A>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

15-64420049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64420049
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64420049
    reference: chr 15
allele count: 1
allele frequency: 8.429002511842749e-6
allele num: 118638
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.807+44C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*244+44C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+9684C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.153+44C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.807+44C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*412+44C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.612+44C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.807+44C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12643
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-64420050-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64420050
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64420049
    reference: chr 15
allele count: 2
allele frequency: 1.686198465559396e-5
allele num: 118610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*244+46delT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.153+46delT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.612+46delT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+9686delT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.807+46delT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.807+46delT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*412+46delT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.807+46delT
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: CT
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

15-64422080-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422080
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422080
    reference: chr 15
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*413-35G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.154-35G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.613-35G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.808-35G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.808-35G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*253G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.808-35G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11715G>T
  variant of: http://identifiers.org/hgnc/11172
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-64422081-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422081
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422081
    reference: chr 15
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.808-34A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.808-34A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.808-34A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*413-34A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11716A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*254A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.613-34A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.154-34A>T
  variant of: http://identifiers.org/hgnc/11172
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-64422083-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422083
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422083
    reference: chr 15
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.808-32A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.808-32A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*413-32A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.154-32A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11718A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*256A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.613-32A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.808-32A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7434
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4729
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-64422085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422085
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422085
    reference: chr 15
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*258C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.154-30C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*413-30C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.808-30C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.613-30C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11720C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.808-30C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.808-30C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-64422091-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422091
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422091
    reference: chr 15
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11726A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.808-24A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.808-24A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*264A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.613-24A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.154-24A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.808-24A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*413-24A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

15-64422105-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422105
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422105
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*413-10G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11740G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.808-10G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.154-10G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*278G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.808-10G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.613-10G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.808-10G>C
  variant of: http://identifiers.org/hgnc/11172
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28186
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-64422111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422111
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422111
    reference: chr 15
allele count: 12
allele frequency: 9.885167306456661e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.808-4G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.808-4G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.154-4G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.613-4G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.808-4G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*284G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*413-4G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11746G>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 8.25e1
  variant carriers: 0
hgvs: c.808-4G>A
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

15-64422111-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422111
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422111
    reference: chr 15
allele count: 306
allele frequency: 2.520717663146449e-3
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.808-4G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11746G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.154-4G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*284G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.613-4G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.808-4G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.808-4G>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*413-4G>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23482
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14826
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 28184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4738
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 7.25e1
  variant carriers: 0
hgvs: c.808-4G>C
num of homozygotes: 3
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-64422118-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422118
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422118
    reference: chr 15
allele count: 61
allele frequency: 5.024711696869852e-4
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11753C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.811C>A
  hgvsp: ENSP00000453785.1:p.Pro271Thr
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*416C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.157C>A
  hgvsp: ENSP00000452651.1:p.Pro53Thr
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*291C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.811C>A
  hgvsp: ENSP00000261889.5:p.Pro271Thr
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.811C>A
  hgvsp: ENSP00000326668.4:p.Pro271Thr
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.616C>A
  hgvsp: ENSP00000453567.1:p.Pro206Thr
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7273
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro271Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-64422121-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422121
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422121
    reference: chr 15
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11756C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.619C>T
  hgvsp: ENSP00000453567.1:p.Arg207Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.814C>T
  hgvsp: ENSP00000326668.4:p.Arg272Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.814C>T
  hgvsp: ENSP00000453785.1:p.Arg272Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.160C>T
  hgvsp: ENSP00000452651.1:p.Arg54Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*294C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.814C>T
  hgvsp: ENSP00000261889.5:p.Arg272Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*419C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg272Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

15-64422122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422122
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422122
    reference: chr 15
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.815G>A
  hgvsp: ENSP00000261889.5:p.Arg272His
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.815G>A
  hgvsp: ENSP00000453785.1:p.Arg272His
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11757G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*295G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.161G>A
  hgvsp: ENSP00000452651.1:p.Arg54His
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*420G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.815G>A
  hgvsp: ENSP00000326668.4:p.Arg272His
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.620G>A
  hgvsp: ENSP00000453567.1:p.Arg207His
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg272His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-64422126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422126
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422126
    reference: chr 15
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*299C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*424C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11761C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.819C>T
  hgvsp: ENST00000559844.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.165C>T
  hgvsp: ENST00000560829.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.819C>T
  hgvsp: ENST00000261889.5:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.819C>T
  hgvsp: ENST00000353874.4:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.624C>T
  hgvsp: ENST00000561026.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala273Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-64422127-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422127
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422127
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*300G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.166G>A
  hgvsp: ENSP00000452651.1:p.Val56Met
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.820G>A
  hgvsp: ENSP00000326668.4:p.Val274Met
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.625G>A
  hgvsp: ENSP00000453567.1:p.Val209Met
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.820G>A
  hgvsp: ENSP00000453785.1:p.Val274Met
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11762G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.820G>A
  hgvsp: ENSP00000261889.5:p.Val274Met
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*425G>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4766
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val274Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-64422132-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422132
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422132
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.171T>C
  hgvsp: ENST00000560829.1:c.171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.825T>C
  hgvsp: ENST00000353874.4:c.825T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*430T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.825T>C
  hgvsp: ENST00000261889.5:c.825T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.825T>C
  hgvsp: ENST00000559844.1:c.825T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*305T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.630T>C
  hgvsp: ENST00000561026.1:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11767T>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly275Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

15-64422140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422140
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422140
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.179C>T
  hgvsp: ENSP00000452651.1:p.Thr60Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*438C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.638C>T
  hgvsp: ENSP00000453567.1:p.Thr213Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*313C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.833C>T
  hgvsp: ENSP00000453785.1:p.Thr278Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.833C>T
  hgvsp: ENSP00000261889.5:p.Thr278Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.833C>T
  hgvsp: ENSP00000326668.4:p.Thr278Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11775C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr278Ile
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

15-64422141-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422141
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422141
    reference: chr 15
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.180A>G
  hgvsp: ENST00000560829.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11776A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*314A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.834A>G
  hgvsp: ENST00000353874.4:c.834A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.834A>G
  hgvsp: ENST00000559844.1:c.834A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.834A>G
  hgvsp: ENST00000261889.5:c.834A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.639A>G
  hgvsp: ENST00000561026.1:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*439A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr278Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

15-64422153-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422153
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422153
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*451T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.846T>C
  hgvsp: ENST00000559844.1:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*326T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.192T>C
  hgvsp: ENST00000560829.1:c.192T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.846T>C
  hgvsp: ENST00000261889.5:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.846T>C
  hgvsp: ENST00000353874.4:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.651T>C
  hgvsp: ENST00000561026.1:c.651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11788T>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7214
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala282Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

15-64422154-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422154
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422154
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.652G>A
  hgvsp: ENSP00000453567.1:p.Gly218Ser
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11789G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.847G>A
  hgvsp: ENSP00000326668.4:p.Gly283Ser
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*327G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.193G>A
  hgvsp: ENSP00000452651.1:p.Gly65Ser
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*452G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.847G>A
  hgvsp: ENSP00000261889.5:p.Gly283Ser
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.847G>A
  hgvsp: ENSP00000453785.1:p.Gly283Ser
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly283Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-64422160-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422160
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422160
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.199C>A
  hgvsp: ENSP00000452651.1:p.Leu67Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.853C>A
  hgvsp: ENSP00000326668.4:p.Leu285Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.853C>A
  hgvsp: ENSP00000261889.5:p.Leu285Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*458C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*333C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.658C>A
  hgvsp: ENSP00000453567.1:p.Leu220Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.853C>A
  hgvsp: ENSP00000453785.1:p.Leu285Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11795C>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7215
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu285Ile
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

15-64422160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422160
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422160
    reference: chr 15
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.199C>T
  hgvsp: ENSP00000452651.1:p.Leu67Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.658C>T
  hgvsp: ENSP00000453567.1:p.Leu220Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*458C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11795C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.853C>T
  hgvsp: ENSP00000453785.1:p.Leu285Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.853C>T
  hgvsp: ENSP00000326668.4:p.Leu285Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.853C>T
  hgvsp: ENSP00000261889.5:p.Leu285Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*333C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7215
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu285Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-64422162-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422162
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422162
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*460C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11797C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.855C>G
  hgvsp: ENST00000353874.4:c.855C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.201C>G
  hgvsp: ENST00000560829.1:c.201C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.855C>G
  hgvsp: ENST00000559844.1:c.855C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.660C>G
  hgvsp: ENST00000561026.1:c.660C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.855C>G
  hgvsp: ENST00000261889.5:c.855C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*335C>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu285Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

15-64422162-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422162
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422162
    reference: chr 15
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.855C>T
  hgvsp: ENST00000559844.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11797C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*460C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.660C>T
  hgvsp: ENST00000561026.1:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.855C>T
  hgvsp: ENST00000353874.4:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.201C>T
  hgvsp: ENST00000560829.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.855C>T
  hgvsp: ENST00000261889.5:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*335C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7213
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu285Leu
num of homozygotes: 1
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

15-64422166-ATG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422166
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422164
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.666_667delGT
  hgvsp: ENSP00000453567.1:p.Met222IlefsTer17
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.861_862delGT
  hgvsp: ENSP00000261889.5:p.Met287IlefsTer17
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.861_862delGT
  hgvsp: ENSP00000326668.4:p.Met287IlefsTer17
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.207_208delGT
  hgvsp: ENSP00000452651.1:p.Met69IlefsTer17
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11803_309+11804delGT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.861_862delGT
  hgvsp: ENSP00000453785.1:p.Met287IlefsTer17
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*341_*342delGT
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*466_*467delGT
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met287IlefsTer17
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: ATG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

15-64422188-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422188
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422188
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.227C>G
  hgvsp: ENSP00000452651.1:p.Ala76Gly
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.686C>G
  hgvsp: ENSP00000453567.1:p.Ala229Gly
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11823C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*486C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.881C>G
  hgvsp: ENSP00000453785.1:p.Ala294Gly
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.881C>G
  hgvsp: ENSP00000326668.4:p.Ala294Gly
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*361C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.881C>G
  hgvsp: ENSP00000261889.5:p.Ala294Gly
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala294Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

15-64422189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422189
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422189
    reference: chr 15
allele count: 9
allele frequency: 7.413875479842496e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.228C>T
  hgvsp: ENST00000560829.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.882C>T
  hgvsp: ENST00000559844.1:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.882C>T
  hgvsp: ENST00000353874.4:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.687C>T
  hgvsp: ENST00000561026.1:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*362C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*487C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11824C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.882C>T
  hgvsp: ENST00000261889.5:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7210
  bin: 9.75e1
  variant carriers: 9
hgvs: p.Ala294Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

15-64422190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422190
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422190
    reference: chr 15
allele count: 6
allele frequency: 4.942420797706717e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11825G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.229G>A
  hgvsp: ENSP00000452651.1:p.Val77Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*363G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.883G>A
  hgvsp: ENSP00000326668.4:p.Val295Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.688G>A
  hgvsp: ENSP00000453567.1:p.Val230Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.883G>A
  hgvsp: ENSP00000453785.1:p.Val295Ile
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*488G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.883G>A
  hgvsp: ENSP00000261889.5:p.Val295Ile
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7204
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9617
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val295Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

15-64422219-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422219
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422219
    reference: chr 15
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.912A>G
  hgvsp: ENST00000559844.1:c.912A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*517A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.912A>G
  hgvsp: ENST00000353874.4:c.912A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.912A>G
  hgvsp: ENST00000261889.5:c.912A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11854A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.717A>G
  hgvsp: ENST00000561026.1:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.258A>G
  hgvsp: ENST00000560829.1:c.258A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*392A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9562
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu304Glu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

15-64422220-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422220
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422220
    reference: chr 15
allele count: 13
allele frequency: 1.071546323771843e-4
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.913T>C
  hgvsp: ENSP00000326668.4:p.Ser305Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.913T>C
  hgvsp: ENSP00000261889.5:p.Ser305Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*393T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.259T>C
  hgvsp: ENSP00000452651.1:p.Ser87Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.718T>C
  hgvsp: ENSP00000453567.1:p.Ser240Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.913T>C
  hgvsp: ENSP00000453785.1:p.Ser305Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11855T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*518T>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28244
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser305Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

15-64422221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422221
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422221
    reference: chr 15
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.914C>T
  hgvsp: ENSP00000326668.4:p.Ser305Leu
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*394C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.914C>T
  hgvsp: ENSP00000261889.5:p.Ser305Leu
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*519C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11856C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.914C>T
  hgvsp: ENSP00000453785.1:p.Ser305Leu
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.260C>T
  hgvsp: ENSP00000452651.1:p.Ser87Leu
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.719C>T
  hgvsp: ENSP00000453567.1:p.Ser240Leu
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23531
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser305Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

15-64422226-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422226
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422226
    reference: chr 15
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.919A>T
  hgvsp: ENSP00000453785.1:p.Ile307Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.724A>T
  hgvsp: ENSP00000453567.1:p.Ile242Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*399A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.919A>T
  hgvsp: ENSP00000261889.5:p.Ile307Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11861A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*524A>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.265A>T
  hgvsp: ENSP00000452651.1:p.Ile89Phe
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.919A>T
  hgvsp: ENSP00000326668.4:p.Ile307Phe
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile307Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-64422232-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422232
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422232
    reference: chr 15
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+4A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11867A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+4A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+4A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+4A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+4A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+4A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+4A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7178
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.921+4A>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

15-64422236-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422236
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422236
    reference: chr 15
allele count: 2
allele frequency: 1.651718613217052e-5
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+8G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11871G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+8G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+8G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+8G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+8G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+8G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+8G>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27630
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
hgvs: c.921+8G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD

15-64422243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422243
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422243
    reference: chr 15
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11878G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+15G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+15G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+15G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+15G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+15G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+15G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+15G>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22686
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9138
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-64422245-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422245
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422245
    reference: chr 15
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+17C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+17C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+17C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11880C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+17C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+17C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+17C>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+17C>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

15-64422249-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422249
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422250
    reference: chr 15
allele count: 9
allele frequency: 7.476821852258001e-5
allele num: 120372
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+22dupA
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11885dupA
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+22dupA
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+22dupA
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+22dupA
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+22dupA
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+22dupA
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+22dupA
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21232
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

15-64422251-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422251
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422251
    reference: chr 15
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+23C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+23C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+23C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11886C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+23C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+23C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+23C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+23C>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

15-64422254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422254
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422254
    reference: chr 15
allele count: 6
allele frequency: 4.99035198616009e-5
allele num: 120232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+26C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11889C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+26C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+26C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+26C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+26C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+26C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+26C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20742
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12365
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3314
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

15-64422255-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422255
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422255
    reference: chr 15
allele count: 2
allele frequency: 1.663921196692125e-5
allele num: 120198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+27C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+27C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+27C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+27C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11890C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+27C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+27C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+27C>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8075
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

15-64422261-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422261
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422261
    reference: chr 15
allele count: 3
allele frequency: 2.499958334027766e-5
allele num: 120002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+33C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+33C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+33C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+33C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+33C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+33C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11896C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+33C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11556
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

15-64422267-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422267
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422266
    reference: chr 15
allele count: 1
allele frequency: 8.364840900726069e-6
allele num: 119548
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+41delG
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+41delG
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+41delG
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+41delG
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+41delG
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11904delG
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+41delG
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+41delG
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: AG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

15-64422269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422269
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422269
    reference: chr 15
allele count: 37
allele frequency: 3.1009051290647e-4
allele num: 119320
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+41G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+41G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+41G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11904G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+41G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+41G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+41G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+41G>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15655
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7026
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

15-64422273-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422273
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422273
    reference: chr 15
allele count: 2
allele frequency: 1.683388324018585e-5
allele num: 118808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.267+45A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*401+45A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.921+45A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+11908A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.726+45A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.921+45A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*526+45A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.921+45A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9869
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3695
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

15-64422377-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422377
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422377
    reference: chr 15
allele count: 1
allele frequency: 8.576329331046313e-6
allele num: 116600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-50C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-50C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-50C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-50C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-50C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-50C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12012C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-50C>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-64422379-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422379
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422379
    reference: chr 15
allele count: 1
allele frequency: 8.56898029134533e-6
allele num: 116700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-48G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-48G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-48G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-48G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-48G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12014G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-48G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-48G>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5809
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP

15-64422380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422380
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422380
    reference: chr 15
allele count: 4
allele frequency: 3.429649318357198e-5
allele num: 116630
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-47C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-47C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-47C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-47C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12015C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-47C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-47C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-47C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15115
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

15-64422383-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422383
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422383
    reference: chr 15
allele count: 1
allele frequency: 8.557687370564979e-6
allele num: 116854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-44C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-44C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-44C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12018C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-44C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-44C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-44C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-44C>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

15-64422385-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422385
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422385
    reference: chr 15
allele count: 1
allele frequency: 8.541022531217438e-6
allele num: 117082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-42A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-42A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-42A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-42A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12020A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-42A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-42A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-42A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5898
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23618
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-64422390-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422390
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422390
    reference: chr 15
allele count: 1
allele frequency: 8.530094172239662e-6
allele num: 117232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-37A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-37A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-37A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-37A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12025A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-37A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-37A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-37A>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/15-64422402-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422402
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422402
    reference: chr 15
allele count: 1
allele frequency: 8.454228805248384e-6
allele num: 118284
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-25A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-25A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-25A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-25A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-25A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12037A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-25A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-25A>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

15-64422404-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422404
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422404
    reference: chr 15
allele count: 1
allele frequency: 8.432983083435934e-6
allele num: 118582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-23A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-23A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-23A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-23A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-23A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12039A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-23A>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-23A>G
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-64422410-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422410
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422410
    reference: chr 15
allele count: 1
allele frequency: 8.371283150281276e-6
allele num: 119456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-17G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12045G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-17G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-17G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-17G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-17G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-17G>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-17G>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-64422411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422411
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422411
    reference: chr 15
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-16G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-16G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-16G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-16G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12046G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-16G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-16G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-16G>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5701
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

15-64422419-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422419
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422419
    reference: chr 15
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-8T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-8T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-8T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12054T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-8T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-8T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-8T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-8T>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 7.25e1
  variant carriers: 0
hgvs: c.922-8T>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-64422423-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422423
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422423
    reference: chr 15
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-4T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-4T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-4T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-4T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-4T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-4T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-4T>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12058T>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.922-4T>C
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

15-64422424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422424
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422424
    reference: chr 15
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.922-3C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.727-3C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.268-3C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*527-3C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.922-3C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.922-3C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*402-3C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12059C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16233
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
hgvs: c.922-3C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

15-64422442-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422442
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422442
    reference: chr 15
allele count: 6
allele frequency: 4.949514947535141e-5
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*417C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.937C>G
  hgvsp: ENSP00000453785.1:p.Leu313Val
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.937C>G
  hgvsp: ENSP00000261889.5:p.Leu313Val
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*542C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.742C>G
  hgvsp: ENSP00000453567.1:p.Leu248Val
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12077C>G
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.937C>G
  hgvsp: ENSP00000326668.4:p.Leu313Val
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.283C>G
  hgvsp: ENSP00000452651.1:p.Leu95Val
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27887
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16561
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu313Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

15-64422444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422444
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422444
    reference: chr 15
allele count: 2
allele frequency: 1.649675014022238e-5
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.744C>T
  hgvsp: ENST00000561026.1:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.285C>T
  hgvsp: ENST00000560829.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.939C>T
  hgvsp: ENST00000353874.4:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.939C>T
  hgvsp: ENST00000559844.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12079C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*419C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.939C>T
  hgvsp: ENST00000261889.5:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*544C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu313Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

15-64422450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422450
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422450
    reference: chr 15
allele count: 2
allele frequency: 1.648804616652927e-5
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.750G>A
  hgvsp: ENST00000561026.1:c.750G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.945G>A
  hgvsp: ENST00000353874.4:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.291G>A
  hgvsp: ENST00000560829.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.945G>A
  hgvsp: ENST00000261889.5:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*425G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*550G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.945G>A
  hgvsp: ENST00000559844.1:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12085G>A
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6645
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu315Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

15-64422465-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422465
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422465
    reference: chr 15
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12100G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.960G>A
  hgvsp: ENST00000559844.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*565G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.960G>A
  hgvsp: ENST00000261889.5:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*440G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.306G>A
  hgvsp: ENST00000560829.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.960G>A
  hgvsp: ENST00000353874.4:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.765G>A
  hgvsp: ENST00000561026.1:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu320Glu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-64422469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422469
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422469
    reference: chr 15
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*569C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.310C>T
  hgvsp: ENSP00000452651.1:p.Arg104Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.964C>T
  hgvsp: ENSP00000453785.1:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12104C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.769C>T
  hgvsp: ENSP00000453567.1:p.Arg257Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.964C>T
  hgvsp: ENSP00000326668.4:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.964C>T
  hgvsp: ENSP00000261889.5:p.Arg322Cys
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*444C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg322Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-64422475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422475
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422475
    reference: chr 15
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12110C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.970C>T
  hgvsp: ENSP00000453785.1:p.Arg324Trp
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*450C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*575C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.970C>T
  hgvsp: ENSP00000261889.5:p.Arg324Trp
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.775C>T
  hgvsp: ENSP00000453567.1:p.Arg259Trp
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.316C>T
  hgvsp: ENSP00000452651.1:p.Arg106Trp
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.970C>T
  hgvsp: ENSP00000326668.4:p.Arg324Trp
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg324Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

15-64422476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422476
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422476
    reference: chr 15
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.971G>A
  hgvsp: ENSP00000261889.5:p.Arg324Gln
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12111G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.317G>A
  hgvsp: ENSP00000452651.1:p.Arg106Gln
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*451G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*576G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.776G>A
  hgvsp: ENSP00000453567.1:p.Arg259Gln
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.971G>A
  hgvsp: ENSP00000453785.1:p.Arg324Gln
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.971G>A
  hgvsp: ENSP00000326668.4:p.Arg324Gln
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5694
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg324Gln
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

15-64422481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422481
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422481
    reference: chr 15
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.322C>T
  hgvsp: ENST00000560829.1:c.322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.976C>T
  hgvsp: ENST00000353874.4:c.976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.976C>T
  hgvsp: ENST00000559844.1:c.976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*456C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12116C>T
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.976C>T
  hgvsp: ENST00000261889.5:c.976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.781C>T
  hgvsp: ENST00000561026.1:c.781C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*581C>T
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu326Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-64422483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422483
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422483
    reference: chr 15
allele count: 2
allele frequency: 1.648723063986942e-5
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.978G>A
  hgvsp: ENST00000261889.5:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.783G>A
  hgvsp: ENST00000561026.1:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*583G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.324G>A
  hgvsp: ENST00000560829.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12118G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*458G>A
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.978G>A
  hgvsp: ENST00000559844.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.978G>A
  hgvsp: ENST00000353874.4:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu326Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-64422485-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64422485
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 64422485
    reference: chr 15
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452651
  ensembl transcript: ENST00000560829
  gene symbol: SNX1
  hgvsc: ENST00000560829.1:c.326A>C
  hgvsp: ENSP00000452651.1:p.His109Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453785
  ensembl transcript: ENST00000559844
  gene symbol: SNX1
  hgvsc: ENST00000559844.1:c.980A>C
  hgvsp: ENSP00000453785.1:p.His327Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452668
  ensembl transcript: ENST00000558040
  gene symbol: SNX1
  hgvsc: ENST00000558040.1:c.309+12120A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000326668
  ensembl transcript: ENST00000353874
  gene symbol: SNX1
  hgvsc: ENST00000353874.4:c.980A>C
  hgvsp: ENSP00000326668.4:p.His327Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000453567
  ensembl transcript: ENST00000561026
  gene symbol: SNX1
  hgvsc: ENST00000561026.1:c.785A>C
  hgvsp: ENSP00000453567.1:p.His262Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000261889
  ensembl transcript: ENST00000261889
  gene symbol: SNX1
  hgvsc: ENST00000261889.5:c.980A>C
  hgvsp: ENSP00000261889.5:p.His327Pro
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000452759
  ensembl transcript: ENST00000560260
  gene symbol: SNX1
  hgvsc: ENST00000560260.1:c.*460A>C
  variant of: http://identifiers.org/hgnc/11172
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000028528
  ensembl protein: ENSP00000369638
  ensembl transcript: ENST00000380285
  gene symbol: SNX1
  hgvsc: ENST00000380285.3:c.*585A>C
  variant of: http://identifiers.org/hgnc/11172
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His327Pro
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31340
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7587
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5584
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.883495145631068e-4
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.421e0

FS
type: SiteQuality
SIO_000300: 1.2078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

DP
type: SiteQuality
SIO_000300: 1.758647e6

VQSLOD
type: SiteQuality
SIO_000300: -1.761e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.198e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e0

GenotypeQuality
all individuals: 709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2830
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65868
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.712509712509713e-5
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

DP
type: SiteQuality
SIO_000300: 1.746071e6

VQSLOD
type: SiteQuality
SIO_000300: -2.582e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeQuality
all individuals: 4001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 985
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177301624676242e-4
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65674
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.151e1

MQRankSum
type: SiteQuality
SIO_000300: 9.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.672562e6

GenotypeQuality
all individuals: 2096
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.127450980392157e-5
allele num: 16320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65674
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.151e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 9.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.672562e6

GenotypeQuality
all individuals: 5174
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4562
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5607
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14350
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.869719699960521e-5
allele num: 10132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.611819e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

FS
type: SiteQuality
SIO_000300: 1.2514e1

MQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 7.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 2302
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2029
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5609
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.076733739462187e-5
allele num: 65004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.286e0

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.610398e6

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28033
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

FS
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.385e0

DP
type: SiteQuality
SIO_000300: 1.926406e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.401e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7433
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3634
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3468
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.798e-1

QD
type: SiteQuality
SIO_000300: 1.739e1

MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 1.926587e6

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28084
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

DP
type: SiteQuality
SIO_000300: 1.927014e6

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 1.054e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.418e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7432
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9539
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 2.888e0

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.927489e6

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7432
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.351e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.928725e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.071e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3640
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

DP
type: SiteQuality
SIO_000300: 1.929736e6

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

FS
type: SiteQuality
SIO_000300: 4.325e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.324e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7525
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9573
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4738
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.386962552011096e-3
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.55e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.424e1

DP
type: SiteQuality
SIO_000300: 1.94421e6

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7525
bin: 9.75e1
variant carriers: 303

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9573
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 164
allele frequency: 2.457665218042859e-3
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 105
allele frequency: 6.359781950333132e-3
allele num: 16510
num of homozygotes: 3

Other
type: Population
allele count: 6
allele frequency: 6.607929515418502e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 2.677954388389772e-3
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

DP
type: SiteQuality
SIO_000300: 1.94421e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

QD
type: SiteQuality
SIO_000300: 1.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.55e-1

GenotypeQuality
all individuals: 28339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3483
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 8.391524560194204e-4
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.930269e6

QD
type: SiteQuality
SIO_000300: 1.254e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.988e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9622
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7220
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.708e0

DP
type: SiteQuality
SIO_000300: 1.92522e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.075e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeQuality
all individuals: 7221
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28373
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.763e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.925325e6

FS
type: SiteQuality
SIO_000300: 1.325e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 4766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9625
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7220
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
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MQRankSum
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MQ
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SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 1.141e0

BaseQRankSum
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SIO_000300: 9.67e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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ClippingRankSum
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SIO_000300: 1.19e0

QD
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ReadPosRankSum
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

MQRankSum
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VQSLOD
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QD
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MQ
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -8.38e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.925356e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.733e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.001e1

ClippingRankSum
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SIO_000300: 4.85e-1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.633e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
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South Asian
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allele frequency: 0.0e0
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ClippingRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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DP
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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East Asian
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FS
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

QD
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ClippingRankSum
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MQRankSum
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SIO_000300: -1.84e-1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.976e-1

ReadPosRankSum
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SIO_000300: 1.65e0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 2.456e0

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.925438e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

ReadPosRankSum
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DP
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InbreedingCoeff
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SIO_000300: 1.976e-1

VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
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SIO_000300: 2.187e0

MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

FS
type: SiteQuality
SIO_000300: 7.202e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.146e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.059e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 6
allele frequency: 3.634161114476075e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495863805299125e-5
allele num: 66728
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.191e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.925071e6

MQRankSum
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SIO_000300: -4.5e-1

FS
type: SiteQuality
SIO_000300: 1.222e0

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.234e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.924781e6

QD
type: SiteQuality
SIO_000300: 1.1e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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MQ
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DP
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.349568138195777e-4
allele num: 66688
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South Asian
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African
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East Asian
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Latino
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allele count: 3
allele frequency: 2.594706798131811e-4
allele num: 11562
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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FS
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DP
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8652
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Latino
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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SIO_000300: 1.022e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.908e0

DP
type: SiteQuality
SIO_000300: 1.921174e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.021e0

MQ
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

MQRankSum
type: SiteQuality
SIO_000300: -1.696e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.692e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

DP
type: SiteQuality
SIO_000300: 1.91854e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

BaseQRankSum
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SIO_000300: 3.71e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.00507858280494e-5
allele num: 66554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 1.905652e6

BaseQRankSum
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SIO_000300: -3.969e0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
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East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.177e1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.883179e6

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.382e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.251e1

ReadPosRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.871589e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 9.682416731216112e-5
allele num: 10328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.208970561566826e-4
allele num: 66172
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511624391571182e-5
allele num: 66154
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

DP
type: SiteQuality
SIO_000300: 1.838483e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.927e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.520681265206813e-4
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.567273057481006e-5
allele num: 66074
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.824379e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.078e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 371
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.027917398413371e-5
allele num: 66052
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 1.852e1

VQSLOD
type: SiteQuality
SIO_000300: -6.682e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

DP
type: SiteQuality
SIO_000300: 1.819011e6

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 1935
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7104
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.632502632502633e-4
allele num: 11396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.826e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

QD
type: SiteQuality
SIO_000300: 1.516e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 1.783851e6

GenotypeQuality
all individuals: 2661
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3034
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 9.25e1
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GenotypeQuality
all individuals: 18995
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7088
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2649
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.352e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

QD
type: SiteQuality
SIO_000300: 1.442e1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

FS
type: SiteQuality
SIO_000300: 3.129e0

MQ
type: SiteQuality
SIO_000300: 6.029e1

DP
type: SiteQuality
SIO_000300: 1.741551e6

GenotypeQuality
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7109
bin: 9.75e1
variant carriers: 37

GenotypeQuality
all individuals: 1774
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 37
allele frequency: 3.595025262339681e-3
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 1.729171e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.369e1

VQSLOD
type: SiteQuality
SIO_000300: 5.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.802e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

GenotypeQuality
all individuals: 198
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7080
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14267
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532942943863629e-5
allele num: 65234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

FS
type: SiteQuality
SIO_000300: 3.51e0

VQSLOD
type: SiteQuality
SIO_000300: -8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.705994e6

QD
type: SiteQuality
SIO_000300: 1.701e1

GenotypeQuality
all individuals: 2108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5715
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2727
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17023
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5600624024961e-5
allele num: 64100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10948
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

QD
type: SiteQuality
SIO_000300: 1.462e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.028e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 1.538742e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

GenotypeQuality
all individuals: 202
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185822095756526e-5
allele num: 16166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64172
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.851e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

QD
type: SiteQuality
SIO_000300: 1.067e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.542784e6

GenotypeQuality
all individuals: 4112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
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variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5707
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19375
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.237930180737806e-4
allele num: 16156
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.256597134958532e-4
allele num: 7958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558360604643914e-5
allele num: 64170
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.127e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

FS
type: SiteQuality
SIO_000300: 2.219e0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.387e1

DP
type: SiteQuality
SIO_000300: 1.5462e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 172
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5699
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.181998021760633e-5
allele num: 16176
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.98e-1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -4.821e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.021e0

DP
type: SiteQuality
SIO_000300: 1.558965e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5700
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.175126590095097e-5
allele num: 16194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64422
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.98e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.55e0

DP
type: SiteQuality
SIO_000300: 1.56692e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.156e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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European (Non-Finnish)
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East Asian
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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MQ
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 65780
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Latino
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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DP
type: SiteQuality
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ClippingRankSum
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MQRankSum
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FS
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MQ
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.51846452866861e-5
allele num: 65856
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MQ
type: SiteQuality
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ReadPosRankSum
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DP
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QD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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Latino
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Other
type: Population
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African
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East Asian
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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allele num: 66478
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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African
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South Asian
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Other
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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MQRankSum
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.373e-1

DP
type: SiteQuality
SIO_000300: 1.709948e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.612e0

QD
type: SiteQuality
SIO_000300: 1.048e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 1.710978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.045e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.183e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.085e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.711936e6

FS
type: SiteQuality
SIO_000300: 3.66e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.234e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.58e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.452e0

DP
type: SiteQuality
SIO_000300: 1.712215e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.145e0

MQRankSum
type: SiteQuality
SIO_000300: -1.315e0

VQSLOD
type: SiteQuality
SIO_000300: -3.011e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.308e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.712216e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Latino
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MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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DP
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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