http://identifiers.org/exac.variant/11-19954703-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954703
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954703
    reference: chr 11
allele count: 1
allele frequency: 9.050265172769562e-6
allele num: 110494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.27-19C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1001-19C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.740-19C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.932-19C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.932-19C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.794-19C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.788-19C>A
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/11-19954707-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954707
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954707
    reference: chr 11
allele count: 1
allele frequency: 9.049609961810647e-6
allele num: 110502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.932-15C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.740-15C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.794-15C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.788-15C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1001-15C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.27-15C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.932-15C>A
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

11-19954711-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954711
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954711
    reference: chr 11
allele count: 2
allele frequency: 1.809725464647013e-5
allele num: 110514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.794-11T>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.932-11T>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.27-11T>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.740-11T>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1001-11T>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.788-11T>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.932-11T>C
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3715
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39245
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP

11-19954723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954723
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954723
    reference: chr 11
allele count: 1
allele frequency: 9.045189768081334e-6
allele num: 110556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.933G>A
  hgvsp: ENST00000396085.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.741G>A
  hgvsp: ENST00000360655.4:c.741G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.933G>A
  hgvsp: ENST00000349880.4:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1002G>A
  hgvsp: ENST00000396087.3:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.795G>A
  hgvsp: ENST00000540292.1:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.28G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.789G>A
  hgvsp: ENST00000527559.2:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1002G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-19954724-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954724
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954724
    reference: chr 11
allele count: 1
allele frequency: 9.045026140125545e-6
allele num: 110558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.790C>A
  hgvsp: ENSP00000435395.2:p.Pro264Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.796C>A
  hgvsp: ENSP00000443489.1:p.Pro266Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.934C>A
  hgvsp: ENSP00000309577.6:p.Pro312Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.742C>A
  hgvsp: ENSP00000353871.4:p.Pro248Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1003C>A
  hgvsp: ENSP00000379396.3:p.Pro335Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.934C>A
  hgvsp: ENSP00000379394.1:p.Pro312Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.29C>A
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro335Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

11-19954746-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954746
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954746
    reference: chr 11
allele count: 1
allele frequency: 9.022013713460844e-6
allele num: 110840
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1025C>G
  hgvsp: ENSP00000379396.3:p.Ser342Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.956C>G
  hgvsp: ENSP00000379394.1:p.Ser319Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.818C>G
  hgvsp: ENSP00000443489.1:p.Ser273Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.764C>G
  hgvsp: ENSP00000353871.4:p.Ser255Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.812C>G
  hgvsp: ENSP00000435395.2:p.Ser271Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.51C>G
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.956C>G
  hgvsp: ENSP00000309577.6:p.Ser319Cys
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser342Cys
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

11-19954749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954749
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954749
    reference: chr 11
allele count: 4
allele frequency: 3.606332720256771e-5
allele num: 110916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.959A>G
  hgvsp: ENSP00000309577.6:p.His320Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1028A>G
  hgvsp: ENSP00000379396.3:p.His343Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.959A>G
  hgvsp: ENSP00000379394.1:p.His320Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.815A>G
  hgvsp: ENSP00000435395.2:p.His272Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.767A>G
  hgvsp: ENSP00000353871.4:p.His256Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.821A>G
  hgvsp: ENSP00000443489.1:p.His274Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.54A>G
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His343Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-19954751-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954751
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954751
    reference: chr 11
allele count: 1
allele frequency: 9.011282125220776e-6
allele num: 110972
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1030C>A
  hgvsp: ENSP00000379396.3:p.Pro344Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.961C>A
  hgvsp: ENSP00000309577.6:p.Pro321Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.56C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.817C>A
  hgvsp: ENSP00000435395.2:p.Pro273Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.769C>A
  hgvsp: ENSP00000353871.4:p.Pro257Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.961C>A
  hgvsp: ENSP00000379394.1:p.Pro321Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.823C>A
  hgvsp: ENSP00000443489.1:p.Pro275Thr
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39238
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6641
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro344Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

11-19954752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954752
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954752
    reference: chr 11
allele count: 2
allele frequency: 1.801379856970439e-5
allele num: 111026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.818C>T
  hgvsp: ENSP00000435395.2:p.Pro273Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.824C>T
  hgvsp: ENSP00000443489.1:p.Pro275Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.962C>T
  hgvsp: ENSP00000379394.1:p.Pro321Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1031C>T
  hgvsp: ENSP00000379396.3:p.Pro344Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.770C>T
  hgvsp: ENSP00000353871.4:p.Pro257Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.57C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.962C>T
  hgvsp: ENSP00000309577.6:p.Pro321Leu
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39238
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro344Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-19954753-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954753
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954753
    reference: chr 11
allele count: 6
allele frequency: 5.402485143165857e-5
allele num: 111060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.825C>T
  hgvsp: ENST00000540292.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.58C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.963C>T
  hgvsp: ENST00000349880.4:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.771C>T
  hgvsp: ENST00000360655.4:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.819C>T
  hgvsp: ENST00000527559.2:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.963C>T
  hgvsp: ENST00000396085.1:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1032C>T
  hgvsp: ENST00000396087.3:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39238
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro344Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

11-19954754-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954754
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954754
    reference: chr 11
allele count: 3
allele frequency: 2.698666858571865e-5
allele num: 111166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.964G>A
  hgvsp: ENSP00000379394.1:p.Gly322Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.59G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.826G>A
  hgvsp: ENSP00000443489.1:p.Gly276Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.820G>A
  hgvsp: ENSP00000435395.2:p.Gly274Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1033G>A
  hgvsp: ENSP00000379396.3:p.Gly345Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.772G>A
  hgvsp: ENSP00000353871.4:p.Gly258Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.964G>A
  hgvsp: ENSP00000309577.6:p.Gly322Arg
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly345Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-19954772-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954772
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954772
    reference: chr 11
allele count: 1
allele frequency: 8.92458723784025e-6
allele num: 112050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.844C>A
  hgvsp: ENSP00000443489.1:p.Pro282Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.982C>A
  hgvsp: ENSP00000379394.1:p.Pro328Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.982C>A
  hgvsp: ENSP00000309577.6:p.Pro328Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.790C>A
  hgvsp: ENSP00000353871.4:p.Pro264Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.838C>A
  hgvsp: ENSP00000435395.2:p.Pro280Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1051C>A
  hgvsp: ENSP00000379396.3:p.Pro351Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.77C>A
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro351Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

11-19954772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954772
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954772
    reference: chr 11
allele count: 43
allele frequency: 3.837572512271308e-4
allele num: 112050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.790C>T
  hgvsp: ENSP00000353871.4:p.Pro264Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.982C>T
  hgvsp: ENSP00000379394.1:p.Pro328Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.844C>T
  hgvsp: ENSP00000443489.1:p.Pro282Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.982C>T
  hgvsp: ENSP00000309577.6:p.Pro328Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.838C>T
  hgvsp: ENSP00000435395.2:p.Pro280Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.77C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1051C>T
  hgvsp: ENSP00000379396.3:p.Pro351Ser
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro351Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

11-19954773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954773
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954773
    reference: chr 11
allele count: 2
allele frequency: 1.783198701831345e-5
allele num: 112158
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1052C>T
  hgvsp: ENSP00000379396.3:p.Pro351Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.983C>T
  hgvsp: ENSP00000309577.6:p.Pro328Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.78C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.839C>T
  hgvsp: ENSP00000435395.2:p.Pro280Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.983C>T
  hgvsp: ENSP00000379394.1:p.Pro328Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.845C>T
  hgvsp: ENSP00000443489.1:p.Pro282Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.791C>T
  hgvsp: ENSP00000353871.4:p.Pro264Leu
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39228
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro351Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-19954775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954775
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954775
    reference: chr 11
allele count: 1
allele frequency: 8.899489169321681e-6
allele num: 112366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.985G>A
  hgvsp: ENSP00000379394.1:p.Ala329Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.847G>A
  hgvsp: ENSP00000443489.1:p.Ala283Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.841G>A
  hgvsp: ENSP00000435395.2:p.Ala281Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.80G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1054G>A
  hgvsp: ENSP00000379396.3:p.Ala352Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.985G>A
  hgvsp: ENSP00000309577.6:p.Ala329Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.793G>A
  hgvsp: ENSP00000353871.4:p.Ala265Thr
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6832
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala352Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

11-19954775-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954775
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954775
    reference: chr 11
allele count: 122
allele frequency: 1.085737678657245e-3
allele num: 112366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.985G>C
  hgvsp: ENSP00000379394.1:p.Ala329Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.985G>C
  hgvsp: ENSP00000309577.6:p.Ala329Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.80G>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1054G>C
  hgvsp: ENSP00000379396.3:p.Ala352Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.793G>C
  hgvsp: ENSP00000353871.4:p.Ala265Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.847G>C
  hgvsp: ENSP00000443489.1:p.Ala283Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.841G>C
  hgvsp: ENSP00000435395.2:p.Ala281Pro
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala352Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

11-19954776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954776
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954776
    reference: chr 11
allele count: 2
allele frequency: 1.77907452543187e-5
allele num: 112418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.986C>T
  hgvsp: ENSP00000309577.6:p.Ala329Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.842C>T
  hgvsp: ENSP00000435395.2:p.Ala281Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.794C>T
  hgvsp: ENSP00000353871.4:p.Ala265Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1055C>T
  hgvsp: ENSP00000379396.3:p.Ala352Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.848C>T
  hgvsp: ENSP00000443489.1:p.Ala283Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.81C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.986C>T
  hgvsp: ENSP00000379394.1:p.Ala329Val
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39209
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala352Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-19954786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954786
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954786
    reference: chr 11
allele count: 1
allele frequency: 8.80839968994433e-6
allele num: 113528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.996G>A
  hgvsp: ENST00000396085.1:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.852G>A
  hgvsp: ENST00000527559.2:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1065G>A
  hgvsp: ENST00000396087.3:c.1065G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.858G>A
  hgvsp: ENST00000540292.1:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.996G>A
  hgvsp: ENST00000349880.4:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.91G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.804G>A
  hgvsp: ENST00000360655.4:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39210
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu355Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum

11-19954786-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954786
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954786
    reference: chr 11
allele count: 3
allele frequency: 2.642519906983299e-5
allele num: 113528
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1065G>T
  hgvsp: ENSP00000379396.3:p.Glu355Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.852G>T
  hgvsp: ENSP00000435395.2:p.Glu284Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.804G>T
  hgvsp: ENSP00000353871.4:p.Glu268Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.996G>T
  hgvsp: ENSP00000379394.1:p.Glu332Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.858G>T
  hgvsp: ENSP00000443489.1:p.Glu286Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.996G>T
  hgvsp: ENSP00000309577.6:p.Glu332Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.91G>T
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu355Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

11-19954789-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954789
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954789
    reference: chr 11
allele count: 4
allele frequency: 3.511914168817714e-5
allele num: 113898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.807C>T
  hgvsp: ENST00000360655.4:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.94C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.999C>T
  hgvsp: ENST00000396085.1:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1068C>T
  hgvsp: ENST00000396087.3:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.861C>T
  hgvsp: ENST00000540292.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.855C>T
  hgvsp: ENST00000527559.2:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.999C>T
  hgvsp: ENST00000349880.4:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39209
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser356Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-19954790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954790
    reference: chr 11
allele count: 8
allele frequency: 6.985069414127303e-5
allele num: 114530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.808G>A
  hgvsp: ENSP00000353871.4:p.Gly270Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.95G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.862G>A
  hgvsp: ENSP00000443489.1:p.Gly288Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1069G>A
  hgvsp: ENSP00000379396.3:p.Gly357Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1000G>A
  hgvsp: ENSP00000379394.1:p.Gly334Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1000G>A
  hgvsp: ENSP00000309577.6:p.Gly334Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.856G>A
  hgvsp: ENSP00000435395.2:p.Gly286Ser
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39209
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly357Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

11-19954790-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954790
    reference: chr 11
allele count: 1
allele frequency: 8.731336767659129e-6
allele num: 114530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.862G>C
  hgvsp: ENSP00000443489.1:p.Gly288Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.856G>C
  hgvsp: ENSP00000435395.2:p.Gly286Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.95G>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.808G>C
  hgvsp: ENSP00000353871.4:p.Gly270Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1000G>C
  hgvsp: ENSP00000379394.1:p.Gly334Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1069G>C
  hgvsp: ENSP00000379396.3:p.Gly357Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1000G>C
  hgvsp: ENSP00000309577.6:p.Gly334Arg
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly357Arg
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

11-19954790-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954790
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954790
    reference: chr 11
allele count: 1
allele frequency: 8.731336767659129e-6
allele num: 114530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1000G>T
  hgvsp: ENSP00000379394.1:p.Gly334Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.95G>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.862G>T
  hgvsp: ENSP00000443489.1:p.Gly288Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1069G>T
  hgvsp: ENSP00000379396.3:p.Gly357Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.808G>T
  hgvsp: ENSP00000353871.4:p.Gly270Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.856G>T
  hgvsp: ENSP00000435395.2:p.Gly286Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1000G>T
  hgvsp: ENSP00000309577.6:p.Gly334Cys
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39209
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly357Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

11-19954793-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954793
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954793
    reference: chr 11
allele count: 2
allele frequency: 1.735568745878024e-5
allele num: 115236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.98A>G
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1003A>G
  hgvsp: ENSP00000379394.1:p.Ser335Gly
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.859A>G
  hgvsp: ENSP00000435395.2:p.Ser287Gly
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1003A>G
  hgvsp: ENSP00000309577.6:p.Ser335Gly
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.865A>G
  hgvsp: ENSP00000443489.1:p.Ser289Gly
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.811A>G
  hgvsp: ENSP00000353871.4:p.Ser271Gly
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1072A>G
  hgvsp: ENSP00000379396.3:p.Ser358Gly
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser358Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-19954797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954797
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954797
    reference: chr 11
allele count: 1
allele frequency: 8.611039352449841e-6
allele num: 116130
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1076G>A
  hgvsp: ENSP00000379396.3:p.Ser359Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.863G>A
  hgvsp: ENSP00000435395.2:p.Ser288Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.815G>A
  hgvsp: ENSP00000353871.4:p.Ser272Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.869G>A
  hgvsp: ENSP00000443489.1:p.Ser290Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.102G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1007G>A
  hgvsp: ENSP00000309577.6:p.Ser336Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1007G>A
  hgvsp: ENSP00000379394.1:p.Ser336Asn
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser359Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-19954801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954801
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954801
    reference: chr 11
allele count: 1
allele frequency: 8.555930115162819e-6
allele num: 116878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.106C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1011C>T
  hgvsp: ENST00000349880.4:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.819C>T
  hgvsp: ENST00000360655.4:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.873C>T
  hgvsp: ENST00000540292.1:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.867C>T
  hgvsp: ENST00000527559.2:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1011C>T
  hgvsp: ENST00000396085.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1080C>T
  hgvsp: ENST00000396087.3:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser360Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/11-19954805-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954805
    reference: chr 11
allele count: 2
allele frequency: 1.700824900076537e-5
allele num: 117590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.871C>A
  hgvsp: ENSP00000435395.2:p.Pro291Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1084C>A
  hgvsp: ENSP00000379396.3:p.Pro362Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.823C>A
  hgvsp: ENSP00000353871.4:p.Pro275Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.877C>A
  hgvsp: ENSP00000443489.1:p.Pro293Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1015C>A
  hgvsp: ENSP00000379394.1:p.Pro339Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1015C>A
  hgvsp: ENSP00000309577.6:p.Pro339Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.110C>A
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro362Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-19954805-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954805
    reference: chr 11
allele count: 1
allele frequency: 8.504124500382685e-6
allele num: 117590
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1084C>T
  hgvsp: ENSP00000379396.3:p.Pro362Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.823C>T
  hgvsp: ENSP00000353871.4:p.Pro275Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.877C>T
  hgvsp: ENSP00000443489.1:p.Pro293Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.871C>T
  hgvsp: ENSP00000435395.2:p.Pro291Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1015C>T
  hgvsp: ENSP00000379394.1:p.Pro339Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.110C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1015C>T
  hgvsp: ENSP00000309577.6:p.Pro339Ser
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro362Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

11-19954808-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954808
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954808
    reference: chr 11
allele count: 2
allele frequency: 1.693709562684191e-5
allele num: 118084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.880A>G
  hgvsp: ENSP00000443489.1:p.Thr294Ala
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.874A>G
  hgvsp: ENSP00000435395.2:p.Thr292Ala
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.826A>G
  hgvsp: ENSP00000353871.4:p.Thr276Ala
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1018A>G
  hgvsp: ENSP00000379394.1:p.Thr340Ala
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.113A>G
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1018A>G
  hgvsp: ENSP00000309577.6:p.Thr340Ala
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1087A>G
  hgvsp: ENSP00000379396.3:p.Thr363Ala
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39195
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr363Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

11-19954825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954825
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954825
    reference: chr 11
allele count: 1
allele frequency: 8.385462961410099e-6
allele num: 119254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1035C>T
  hgvsp: ENST00000349880.4:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1035C>T
  hgvsp: ENST00000396085.1:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.897C>T
  hgvsp: ENST00000540292.1:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.843C>T
  hgvsp: ENST00000360655.4:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.130C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1104C>T
  hgvsp: ENST00000396087.3:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.891C>T
  hgvsp: ENST00000527559.2:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10000
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser368Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

11-19954827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954827
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954827
    reference: chr 11
allele count: 13
allele frequency: 1.089379388941961e-4
allele num: 119334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.132C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1037C>T
  hgvsp: ENSP00000379394.1:p.Ser346Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1106C>T
  hgvsp: ENSP00000379396.3:p.Ser369Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.893C>T
  hgvsp: ENSP00000435395.2:p.Ser298Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1037C>T
  hgvsp: ENSP00000309577.6:p.Ser346Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.899C>T
  hgvsp: ENSP00000443489.1:p.Ser300Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.845C>T
  hgvsp: ENSP00000353871.4:p.Ser282Leu
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser369Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-19954828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954828
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954828
    reference: chr 11
allele count: 2
allele frequency: 1.675350567106167e-5
allele num: 119378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1038G>A
  hgvsp: ENST00000396085.1:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.846G>A
  hgvsp: ENST00000360655.4:c.846G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1107G>A
  hgvsp: ENST00000396087.3:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.900G>A
  hgvsp: ENST00000540292.1:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.133G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.894G>A
  hgvsp: ENST00000527559.2:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1038G>A
  hgvsp: ENST00000349880.4:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser369Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

11-19954828-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954828
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954828
    reference: chr 11
allele count: 1
allele frequency: 8.376752835530836e-6
allele num: 119378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1038G>C
  hgvsp: ENST00000396085.1:c.1038G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.900G>C
  hgvsp: ENST00000540292.1:c.900G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.846G>C
  hgvsp: ENST00000360655.4:c.846G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1038G>C
  hgvsp: ENST00000349880.4:c.1038G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1107G>C
  hgvsp: ENST00000396087.3:c.1107G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.133G>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.894G>C
  hgvsp: ENST00000527559.2:c.894G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser369Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-19954830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954830
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954830
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 119446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.902C>A
  hgvsp: ENSP00000443489.1:p.Ala301Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1040C>A
  hgvsp: ENSP00000379394.1:p.Ala347Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1109C>A
  hgvsp: ENSP00000379396.3:p.Ala370Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.848C>A
  hgvsp: ENSP00000353871.4:p.Ala283Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.896C>A
  hgvsp: ENSP00000435395.2:p.Ala299Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.135C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1040C>A
  hgvsp: ENSP00000309577.6:p.Ala347Asp
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala370Asp
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-19954836-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954836
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954836
    reference: chr 11
allele count: 1
allele frequency: 8.364840900726069e-6
allele num: 119548
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1115C>G
  hgvsp: ENSP00000379396.3:p.Pro372Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.854C>G
  hgvsp: ENSP00000353871.4:p.Pro285Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1046C>G
  hgvsp: ENSP00000309577.6:p.Pro349Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1046C>G
  hgvsp: ENSP00000379394.1:p.Pro349Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.141C>G
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.902C>G
  hgvsp: ENSP00000435395.2:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.908C>G
  hgvsp: ENSP00000443489.1:p.Pro303Arg
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39188
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro372Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

11-19954836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954836
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954836
    reference: chr 11
allele count: 6
allele frequency: 5.018904540435641e-5
allele num: 119548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.908C>T
  hgvsp: ENSP00000443489.1:p.Pro303Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.902C>T
  hgvsp: ENSP00000435395.2:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.141C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1046C>T
  hgvsp: ENSP00000309577.6:p.Pro349Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.854C>T
  hgvsp: ENSP00000353871.4:p.Pro285Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1115C>T
  hgvsp: ENSP00000379396.3:p.Pro372Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1046C>T
  hgvsp: ENSP00000379394.1:p.Pro349Leu
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39188
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro372Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-19954837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954837
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954837
    reference: chr 11
allele count: 4
allele frequency: 3.348232970050056e-5
allele num: 119466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1047G>A
  hgvsp: ENST00000349880.4:c.1047G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1047G>A
  hgvsp: ENST00000396085.1:c.1047G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.909G>A
  hgvsp: ENST00000540292.1:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.855G>A
  hgvsp: ENST00000360655.4:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.903G>A
  hgvsp: ENST00000527559.2:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.142G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1116G>A
  hgvsp: ENST00000396087.3:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9403
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39187
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro372Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

11-19954838-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954838
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954838
    reference: chr 11
allele count: 2
allele frequency: 1.673556139440698e-5
allele num: 119506
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.910C>G
  hgvsp: ENSP00000443489.1:p.Gln304Glu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.143C>G
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1048C>G
  hgvsp: ENSP00000379394.1:p.Gln350Glu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.904C>G
  hgvsp: ENSP00000435395.2:p.Gln302Glu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.856C>G
  hgvsp: ENSP00000353871.4:p.Gln286Glu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1117C>G
  hgvsp: ENSP00000379396.3:p.Gln373Glu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1048C>G
  hgvsp: ENSP00000309577.6:p.Gln350Glu
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln373Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

11-19954843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954843
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954843
    reference: chr 11
allele count: 7
allele frequency: 5.851179430596653e-5
allele num: 119634
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1122C>T
  hgvsp: ENST00000396087.3:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1053C>T
  hgvsp: ENST00000396085.1:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.915C>T
  hgvsp: ENST00000540292.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.909C>T
  hgvsp: ENST00000527559.2:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1053C>T
  hgvsp: ENST00000349880.4:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.148C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.861C>T
  hgvsp: ENST00000360655.4:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro374Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-19954844-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954844
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954844
    reference: chr 11
allele count: 75
allele frequency: 6.268596837283942e-4
allele num: 119644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.862G>A
  hgvsp: ENSP00000353871.4:p.Gly288Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1123G>A
  hgvsp: ENSP00000379396.3:p.Gly375Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1054G>A
  hgvsp: ENSP00000309577.6:p.Gly352Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.916G>A
  hgvsp: ENSP00000443489.1:p.Gly306Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1054G>A
  hgvsp: ENSP00000379394.1:p.Gly352Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.149G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.910G>A
  hgvsp: ENSP00000435395.2:p.Gly304Ser
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly375Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

11-19954845-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954845
    reference: chr 11
allele count: 1
allele frequency: 8.357989402069439e-6
allele num: 119646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.911G>T
  hgvsp: ENSP00000435395.2:p.Gly304Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.863G>T
  hgvsp: ENSP00000353871.4:p.Gly288Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1124G>T
  hgvsp: ENSP00000379396.3:p.Gly375Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1055G>T
  hgvsp: ENSP00000379394.1:p.Gly352Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.150G>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.917G>T
  hgvsp: ENSP00000443489.1:p.Gly306Val
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1055G>T
  hgvsp: ENSP00000309577.6:p.Gly352Val
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly375Val
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

11-19954847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954847
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954847
    reference: chr 11
allele count: 2
allele frequency: 1.671821449469197e-5
allele num: 119630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.913G>A
  hgvsp: ENSP00000435395.2:p.Ala305Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1126G>A
  hgvsp: ENSP00000379396.3:p.Ala376Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.919G>A
  hgvsp: ENSP00000443489.1:p.Ala307Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.865G>A
  hgvsp: ENSP00000353871.4:p.Ala289Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1057G>A
  hgvsp: ENSP00000379394.1:p.Ala353Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.152G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1057G>A
  hgvsp: ENSP00000309577.6:p.Ala353Thr
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala376Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-19954858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954858
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954858
    reference: chr 11
allele count: 1
allele frequency: 8.37184381488179e-6
allele num: 119448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.163G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.930G>A
  hgvsp: ENST00000540292.1:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1068G>A
  hgvsp: ENST00000349880.4:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1068G>A
  hgvsp: ENST00000396085.1:c.1068G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.876G>A
  hgvsp: ENST00000360655.4:c.876G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1137G>A
  hgvsp: ENST00000396087.3:c.1137G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.924G>A
  hgvsp: ENST00000527559.2:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys379Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/11-19954860-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954860
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954860
    reference: chr 11
allele count: 1
allele frequency: 8.378998877214151e-6
allele num: 119346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.165C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.878C>A
  hgvsp: ENSP00000353871.4:p.Pro293His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1070C>A
  hgvsp: ENSP00000309577.6:p.Pro357His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.932C>A
  hgvsp: ENSP00000443489.1:p.Pro311His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.926C>A
  hgvsp: ENSP00000435395.2:p.Pro309His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1070C>A
  hgvsp: ENSP00000379394.1:p.Pro357His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1139C>A
  hgvsp: ENSP00000379396.3:p.Pro380His
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39165
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro380His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

11-19954865-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954865
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954865
    reference: chr 11
allele count: 1
allele frequency: 8.397997917296517e-6
allele num: 119076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.883C>T
  hgvsp: ENSP00000353871.4:p.Arg295Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1075C>T
  hgvsp: ENSP00000309577.6:p.Arg359Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.170C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1075C>T
  hgvsp: ENSP00000379394.1:p.Arg359Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.937C>T
  hgvsp: ENSP00000443489.1:p.Arg313Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.931C>T
  hgvsp: ENSP00000435395.2:p.Arg311Cys
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1144C>T
  hgvsp: ENSP00000379396.3:p.Arg382Cys
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg382Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

11-19954866-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954866
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954866
    reference: chr 11
allele count: 1
allele frequency: 8.397715821296607e-6
allele num: 119080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.938G>A
  hgvsp: ENSP00000443489.1:p.Arg313His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1076G>A
  hgvsp: ENSP00000379394.1:p.Arg359His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1145G>A
  hgvsp: ENSP00000379396.3:p.Arg382His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.884G>A
  hgvsp: ENSP00000353871.4:p.Arg295His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.932G>A
  hgvsp: ENSP00000435395.2:p.Arg311His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1076G>A
  hgvsp: ENSP00000309577.6:p.Arg359His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.171G>A
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg382His
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

11-19954877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954877
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954877
    reference: chr 11
allele count: 1
allele frequency: 8.449228585430151e-6
allele num: 118354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1087C>T
  hgvsp: ENSP00000379394.1:p.Leu363Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1087C>T
  hgvsp: ENSP00000309577.6:p.Leu363Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.949C>T
  hgvsp: ENSP00000443489.1:p.Leu317Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.895C>T
  hgvsp: ENSP00000353871.4:p.Leu299Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.182C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.943C>T
  hgvsp: ENSP00000435395.2:p.Leu315Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1156C>T
  hgvsp: ENSP00000379396.3:p.Leu386Phe
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8255
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu386Phe
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

11-19954878-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954878
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954878
    reference: chr 11
allele count: 1
allele frequency: 8.452370890034655e-6
allele num: 118310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.950T>A
  hgvsp: ENSP00000443489.1:p.Leu317His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.896T>A
  hgvsp: ENSP00000353871.4:p.Leu299His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1088T>A
  hgvsp: ENSP00000379394.1:p.Leu363His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1088T>A
  hgvsp: ENSP00000309577.6:p.Leu363His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.183T>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.944T>A
  hgvsp: ENSP00000435395.2:p.Leu315His
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1157T>A
  hgvsp: ENSP00000379396.3:p.Leu386His
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu386His
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

11-19954881-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954881
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954881
    reference: chr 11
allele count: 1
allele frequency: 8.465250148141878e-6
allele num: 118130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.186G>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.953G>C
  hgvsp: ENSP00000443489.1:p.Ser318Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.947G>C
  hgvsp: ENSP00000435395.2:p.Ser316Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1160G>C
  hgvsp: ENSP00000379396.3:p.Ser387Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1091G>C
  hgvsp: ENSP00000379394.1:p.Ser364Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1091G>C
  hgvsp: ENSP00000309577.6:p.Ser364Thr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.899G>C
  hgvsp: ENSP00000353871.4:p.Ser300Thr
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser387Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

11-19954882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954882
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954882
    reference: chr 11
allele count: 12
allele frequency: 1.017345744951422e-4
allele num: 117954
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1161C>T
  hgvsp: ENST00000396087.3:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.948C>T
  hgvsp: ENST00000527559.2:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.900C>T
  hgvsp: ENST00000360655.4:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.954C>T
  hgvsp: ENST00000540292.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1092C>T
  hgvsp: ENST00000396085.1:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1092C>T
  hgvsp: ENST00000349880.4:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.187C>T
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser387Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

11-19954887-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954887
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954887
    reference: chr 11
allele count: 1
allele frequency: 8.497476249553883e-6
allele num: 117682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1097A>G
  hgvsp: ENSP00000309577.6:p.Lys366Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.953A>G
  hgvsp: ENSP00000435395.2:p.Lys318Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.959A>G
  hgvsp: ENSP00000443489.1:p.Lys320Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1097A>G
  hgvsp: ENSP00000379394.1:p.Lys366Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.192A>G
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1166A>G
  hgvsp: ENSP00000379396.3:p.Lys389Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.905A>G
  hgvsp: ENSP00000353871.4:p.Lys302Arg
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys389Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-19954888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954888
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954888
    reference: chr 11
allele count: 1
allele frequency: 8.507307777380771e-6
allele num: 117546
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1167G>A
  hgvsp: ENST00000396087.3:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.193G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1098G>A
  hgvsp: ENST00000396085.1:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.954G>A
  hgvsp: ENST00000527559.2:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.960G>A
  hgvsp: ENST00000540292.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1098G>A
  hgvsp: ENST00000349880.4:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.906G>A
  hgvsp: ENST00000360655.4:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys389Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/11-19954889-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954889
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954889
    reference: chr 11
allele count: 4
allele frequency: 3.410583039170546e-5
allele num: 117282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.955C>A
  hgvsp: ENSP00000435395.2:p.His319Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1168C>A
  hgvsp: ENSP00000379396.3:p.His390Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.907C>A
  hgvsp: ENSP00000353871.4:p.His303Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.194C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1099C>A
  hgvsp: ENSP00000379394.1:p.His367Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.961C>A
  hgvsp: ENSP00000443489.1:p.His321Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1099C>A
  hgvsp: ENSP00000309577.6:p.His367Asn
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His390Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-19954890-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954890
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954890
    reference: chr 11
allele count: 1
allele frequency: 8.521662064969151e-6
allele num: 117348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.956A>C
  hgvsp: ENSP00000435395.2:p.His319Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.962A>C
  hgvsp: ENSP00000443489.1:p.His321Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1100A>C
  hgvsp: ENSP00000379394.1:p.His367Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1169A>C
  hgvsp: ENSP00000379396.3:p.His390Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1100A>C
  hgvsp: ENSP00000309577.6:p.His367Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.908A>C
  hgvsp: ENSP00000353871.4:p.His303Pro
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.195A>C
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39152
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His390Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

11-19954891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954891
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954891
    reference: chr 11
allele count: 1
allele frequency: 8.533296924599789e-6
allele num: 117188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1101C>T
  hgvsp: ENST00000349880.4:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1101C>T
  hgvsp: ENST00000396085.1:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1170C>T
  hgvsp: ENST00000396087.3:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.909C>T
  hgvsp: ENST00000360655.4:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.963C>T
  hgvsp: ENST00000540292.1:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.957C>T
  hgvsp: ENST00000527559.2:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.196C>T
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His390His
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

11-19954893-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954893
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954893
    reference: chr 11
allele count: 1
allele frequency: 8.536356341659126e-6
allele num: 117146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1103G>T
  hgvsp: ENSP00000379394.1:p.Ser368Ile
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.198G>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.911G>T
  hgvsp: ENSP00000353871.4:p.Ser304Ile
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1172G>T
  hgvsp: ENSP00000379396.3:p.Ser391Ile
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1103G>T
  hgvsp: ENSP00000309577.6:p.Ser368Ile
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.959G>T
  hgvsp: ENSP00000435395.2:p.Ser320Ile
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.965G>T
  hgvsp: ENSP00000443489.1:p.Ser322Ile
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser391Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-19954896-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954896
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954896
    reference: chr 11
allele count: 2
allele frequency: 1.714736445008402e-5
allele num: 116636
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1175C>A
  hgvsp: ENSP00000379396.3:p.Ala392Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1106C>A
  hgvsp: ENSP00000379394.1:p.Ala369Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.201C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.968C>A
  hgvsp: ENSP00000443489.1:p.Ala323Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.962C>A
  hgvsp: ENSP00000435395.2:p.Ala321Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.914C>A
  hgvsp: ENSP00000353871.4:p.Ala305Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1106C>A
  hgvsp: ENSP00000309577.6:p.Ala369Asp
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala392Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-19954900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954900
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954900
    reference: chr 11
allele count: 1
allele frequency: 8.592246356887545e-6
allele num: 116384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1110G>A
  hgvsp: ENST00000396085.1:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.972G>A
  hgvsp: ENST00000540292.1:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.918G>A
  hgvsp: ENST00000360655.4:c.918G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1110G>A
  hgvsp: ENST00000349880.4:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1179G>A
  hgvsp: ENST00000396087.3:c.1179G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.966G>A
  hgvsp: ENST00000527559.2:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.205G>A
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr393Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

11-19954903-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954903
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954903
    reference: chr 11
allele count: 25
allele frequency: 2.152315030046318e-4
allele num: 116154
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1182A>G
  hgvsp: ENST00000396087.3:c.1182A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.975A>G
  hgvsp: ENST00000540292.1:c.975A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.921A>G
  hgvsp: ENST00000360655.4:c.921A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.969A>G
  hgvsp: ENST00000527559.2:c.969A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1113A>G
  hgvsp: ENST00000349880.4:c.1113A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.208A>G
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1113A>G
  hgvsp: ENST00000396085.1:c.1113A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39155
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val394Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

11-19954903-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954903
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954903
    reference: chr 11
allele count: 1
allele frequency: 8.609260120185271e-6
allele num: 116154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.969A>T
  hgvsp: ENST00000527559.2:c.969A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.975A>T
  hgvsp: ENST00000540292.1:c.975A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1113A>T
  hgvsp: ENST00000396085.1:c.1113A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1182A>T
  hgvsp: ENST00000396087.3:c.1182A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.208A>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.921A>T
  hgvsp: ENST00000360655.4:c.921A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1113A>T
  hgvsp: ENST00000349880.4:c.1113A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val394Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-19954905-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954905
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954905
    reference: chr 11
allele count: 1
allele frequency: 8.633789197402956e-6
allele num: 115824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.971C>A
  hgvsp: ENSP00000435395.2:p.Ser324Tyr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.210C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1184C>A
  hgvsp: ENSP00000379396.3:p.Ser395Tyr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1115C>A
  hgvsp: ENSP00000379394.1:p.Ser372Tyr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.977C>A
  hgvsp: ENSP00000443489.1:p.Ser326Tyr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1115C>A
  hgvsp: ENSP00000309577.6:p.Ser372Tyr
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.923C>A
  hgvsp: ENSP00000353871.4:p.Ser308Tyr
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39145
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser395Tyr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-19954910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954910
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954910
    reference: chr 11
allele count: 1
allele frequency: 8.672575581496193e-6
allele num: 115306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.982C>T
  hgvsp: ENSP00000443489.1:p.Leu328Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.976C>T
  hgvsp: ENSP00000435395.2:p.Leu326Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1189C>T
  hgvsp: ENSP00000379396.3:p.Leu397Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.928C>T
  hgvsp: ENSP00000353871.4:p.Leu310Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1120C>T
  hgvsp: ENSP00000309577.6:p.Leu374Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1120C>T
  hgvsp: ENSP00000379394.1:p.Leu374Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.215C>T
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5600
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu397Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-19954914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954914
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954914
    reference: chr 11
allele count: 12
allele frequency: 1.044241010825299e-4
allele num: 114916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.219C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1193C>T
  hgvsp: ENSP00000379396.3:p.Ser398Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1124C>T
  hgvsp: ENSP00000309577.6:p.Ser375Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1124C>T
  hgvsp: ENSP00000379394.1:p.Ser375Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.986C>T
  hgvsp: ENSP00000443489.1:p.Ser329Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.932C>T
  hgvsp: ENSP00000353871.4:p.Ser311Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.980C>T
  hgvsp: ENSP00000435395.2:p.Ser327Leu
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5488
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser398Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

11-19954915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954915
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954915
    reference: chr 11
allele count: 11
allele frequency: 9.57670944263551e-5
allele num: 114862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.220G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1194G>A
  hgvsp: ENST00000396087.3:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1125G>A
  hgvsp: ENST00000396085.1:c.1125G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.981G>A
  hgvsp: ENST00000527559.2:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1125G>A
  hgvsp: ENST00000349880.4:c.1125G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.987G>A
  hgvsp: ENST00000540292.1:c.987G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.933G>A
  hgvsp: ENST00000360655.4:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39139
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser398Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-19954916-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954916
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954916
    reference: chr 11
allele count: 3
allele frequency: 2.613331474964284e-5
allele num: 114796
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1195G>T
  hgvsp: ENSP00000379396.3:p.Val399Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.934G>T
  hgvsp: ENSP00000353871.4:p.Val312Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1126G>T
  hgvsp: ENSP00000379394.1:p.Val376Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1126G>T
  hgvsp: ENSP00000309577.6:p.Val376Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.221G>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.982G>T
  hgvsp: ENSP00000435395.2:p.Val328Phe
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.988G>T
  hgvsp: ENSP00000443489.1:p.Val330Phe
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val399Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

11-19954921-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954921
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954921
    reference: chr 11
allele count: 1
allele frequency: 8.756260726419389e-6
allele num: 114204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.993G>C
  hgvsp: ENSP00000443489.1:p.Lys331Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1131G>C
  hgvsp: ENSP00000309577.6:p.Lys377Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.939G>C
  hgvsp: ENSP00000353871.4:p.Lys313Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1131G>C
  hgvsp: ENSP00000379394.1:p.Lys377Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.226G>C
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1200G>C
  hgvsp: ENSP00000379396.3:p.Lys400Asn
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.987G>C
  hgvsp: ENSP00000435395.2:p.Lys329Asn
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys400Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-19954923-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954923
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954923
    reference: chr 11
allele count: 1
allele frequency: 8.756260726419389e-6
allele num: 114204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.995C>G
  hgvsp: ENSP00000443489.1:p.Pro332Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.941C>G
  hgvsp: ENSP00000353871.4:p.Pro314Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1202C>G
  hgvsp: ENSP00000379396.3:p.Pro401Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.989C>G
  hgvsp: ENSP00000435395.2:p.Pro330Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1133C>G
  hgvsp: ENSP00000309577.6:p.Pro378Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1133C>G
  hgvsp: ENSP00000379394.1:p.Pro378Arg
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.228C>G
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4056
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro401Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

11-19954923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954923
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954923
    reference: chr 11
allele count: 2
allele frequency: 1.751252145283878e-5
allele num: 114204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.995C>T
  hgvsp: ENSP00000443489.1:p.Pro332Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1133C>T
  hgvsp: ENSP00000379394.1:p.Pro378Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1202C>T
  hgvsp: ENSP00000379396.3:p.Pro401Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.989C>T
  hgvsp: ENSP00000435395.2:p.Pro330Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.228C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1133C>T
  hgvsp: ENSP00000309577.6:p.Pro378Leu
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.941C>T
  hgvsp: ENSP00000353871.4:p.Pro314Leu
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4056
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro401Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

11-19954936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954936
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954936
    reference: chr 11
allele count: 3
allele frequency: 2.653458340704051e-5
allele num: 113060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.1008G>A
  hgvsp: ENST00000540292.1:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1146G>A
  hgvsp: ENST00000349880.4:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1146G>A
  hgvsp: ENST00000396085.1:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1215G>A
  hgvsp: ENST00000396087.3:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.954G>A
  hgvsp: ENST00000360655.4:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.241G>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.1002G>A
  hgvsp: ENST00000527559.2:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4976
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu405Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-19954938-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954938
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954938
    reference: chr 11
allele count: 1
allele frequency: 8.853945318033716e-6
allele num: 112944
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1217C>A
  hgvsp: ENSP00000379396.3:p.Ala406Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.243C>A
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.1010C>A
  hgvsp: ENSP00000443489.1:p.Ala337Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.956C>A
  hgvsp: ENSP00000353871.4:p.Ala319Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1148C>A
  hgvsp: ENSP00000309577.6:p.Ala383Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.1004C>A
  hgvsp: ENSP00000435395.2:p.Ala335Asp
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1148C>A
  hgvsp: ENSP00000379394.1:p.Ala383Asp
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala406Asp
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-19954940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954940
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954940
    reference: chr 11
allele count: 3
allele frequency: 2.656606981563148e-5
allele num: 112926
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1219C>T
  hgvsp: ENSP00000379396.3:p.Pro407Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.1012C>T
  hgvsp: ENSP00000443489.1:p.Pro338Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.245C>T
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.1006C>T
  hgvsp: ENSP00000435395.2:p.Pro336Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.958C>T
  hgvsp: ENSP00000353871.4:p.Pro320Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1150C>T
  hgvsp: ENSP00000379394.1:p.Pro384Ser
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1150C>T
  hgvsp: ENSP00000309577.6:p.Pro384Ser
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro407Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

11-19954948-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19954948
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 19954948
    reference: chr 11
allele count: 1
allele frequency: 8.887308922858158e-6
allele num: 112520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166833
  ensembl transcript: ENST00000528008
  gene symbol: NAV2
  hgvsc: ENST00000528008.1:n.253C>G
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000443489
  ensembl transcript: ENST00000540292
  gene symbol: NAV2
  hgvsc: ENST00000540292.1:c.1020C>G
  hgvsp: ENST00000540292.1:c.1020C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000353871
  ensembl transcript: ENST00000360655
  gene symbol: NAV2
  hgvsc: ENST00000360655.4:c.966C>G
  hgvsp: ENST00000360655.4:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000435395
  ensembl transcript: ENST00000527559
  gene symbol: NAV2
  hgvsc: ENST00000527559.2:c.1014C>G
  hgvsp: ENST00000527559.2:c.1014C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379394
  ensembl transcript: ENST00000396085
  gene symbol: NAV2
  hgvsc: ENST00000396085.1:c.1158C>G
  hgvsp: ENST00000396085.1:c.1158C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000309577
  ensembl transcript: ENST00000349880
  gene symbol: NAV2
  hgvsc: ENST00000349880.4:c.1158C>G
  hgvsp: ENST00000349880.4:c.1158C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166833
  ensembl protein: ENSP00000379396
  ensembl transcript: ENST00000396087
  gene symbol: NAV2
  hgvsc: ENST00000396087.3:c.1227C>G
  hgvsp: ENST00000396087.3:c.1227C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15997
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro409Pro
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39245
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.815469179426777e-5
allele num: 10188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.679e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

DP
type: SiteQuality
SIO_000300: 2.998674e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

GenotypeQuality
all individuals: 2311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39245
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2882e1

DP
type: SiteQuality
SIO_000300: 2.999864e6

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: -2.82e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.662e0

QD
type: SiteQuality
SIO_000300: 1.367e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
all individuals: 1474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741856819369448e-4
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 1.308e1

VQSLOD
type: SiteQuality
SIO_000300: -1.526e0

MQRankSum
type: SiteQuality
SIO_000300: 2.73e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 2.607e0

DP
type: SiteQuality
SIO_000300: 3.001077e6

GenotypeQuality
all individuals: 2329
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.803921568627451e-5
allele num: 10200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.004866e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.819e0

QD
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeQuality
all individuals: 252
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6564
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56416192204217e-5
allele num: 63932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 7.274e0

QD
type: SiteQuality
SIO_000300: 1.176e1

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.359e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.32e-1

DP
type: SiteQuality
SIO_000300: 3.005271e6

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6635
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562353529356623e-5
allele num: 64006
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

DP
type: SiteQuality
SIO_000300: 3.014322e6

FS
type: SiteQuality
SIO_000300: 1.749e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 39242
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64004
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.315925766076823e-4
allele num: 9268
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

FS
type: SiteQuality
SIO_000300: 1.115e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

DP
type: SiteQuality
SIO_000300: 3.016227e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 1.138e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

GenotypeQuality
all individuals: 156
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.074575542660649e-4
allele num: 9306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.744e0

QD
type: SiteQuality
SIO_000300: 1.381e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

DP
type: SiteQuality
SIO_000300: 3.017197e6

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 2322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1167
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.958480219349785e-4
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

QD
type: SiteQuality
SIO_000300: 1.327e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

DP
type: SiteQuality
SIO_000300: 3.017765e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.189e0

MQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.340823970037453e-4
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561719140429785e-5
allele num: 64032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.611875326484416e-4
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.01864e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.327e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
all individuals: 1133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 2355
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.682963379226374e-5
allele num: 64062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.428e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 3.019035e6

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
all individuals: 1479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1472
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GenotypeQuality
all individuals: 39236
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556517137253681e-5
allele num: 64246
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.578e0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

DP
type: SiteQuality
SIO_000300: 3.033042e6

GenotypeQuality
all individuals: 6745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 43

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 43
allele frequency: 5.006986492780624e-3
allele num: 8588
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.578e0

DP
type: SiteQuality
SIO_000300: 3.033042e6

QD
type: SiteQuality
SIO_000300: 1.293e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555984315678098e-5
allele num: 64268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.871668311944718e-5
allele num: 10130
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 1.229e0

DP
type: SiteQuality
SIO_000300: 3.025338e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.365e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: -6.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
all individuals: 39230
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554871412134217e-5
allele num: 64314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.381e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 3.03699e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.481e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 2.479e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 6832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
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GenotypeQuality
all individuals: 40
bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.75e1
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GenotypeQuality
all individuals: 135
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39230
bin: 9.75e1
variant carriers: 122

African
type: Population
allele count: 8
allele frequency: 7.814026176987692e-4
allele num: 10238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 91
allele frequency: 1.414932985042137e-3
allele num: 64314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 1.999304589707928e-3
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.481e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 3.03699e6

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeQuality
all individuals: 1474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 2.25e1
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GenotypeQuality
all individuals: 1136
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.108776074859328e-5
allele num: 64334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.26e0

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 3.017445e6

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.945e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.012256669069935e-5
allele num: 11096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

QD
type: SiteQuality
SIO_000300: 1.247e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 3.025684e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.86e0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39210
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3492
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.096358682189745e-5
allele num: 64592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.222493887530562e-3
allele num: 818
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.86e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 3.025684e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.247e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.815232722143864e-5
allele num: 11344
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.091285665708368e-5
allele num: 64698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 3.029328e6

QD
type: SiteQuality
SIO_000300: 1.194e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 3182
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variant carriers: 0

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 1477
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GenotypeQuality
all individuals: 258
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GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 1738
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7614
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.914319020788809e-4
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.085753078038695e-5
allele num: 64814
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.536354413256679e-4
allele num: 11828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.475e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 3.032859e6

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.454514710855597e-5
allele num: 11828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.475e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

DP
type: SiteQuality
SIO_000300: 3.032859e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 3.032859e6

QD
type: SiteQuality
SIO_000300: 1.475e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 1.942501942501943e-4
allele num: 10296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65006
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.279e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.504e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.037422e6

VQSLOD
type: SiteQuality
SIO_000300: -5.406e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.732755954222085e-5
allele num: 12932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.987e1

VQSLOD
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SIO_000300: -7.254e-1

FS
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SIO_000300: 7.628e0

ClippingRankSum
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SIO_000300: -2.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

DP
type: SiteQuality
SIO_000300: 3.042778e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 1490
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527977263698316e-5
allele num: 65446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 13440
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
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DP
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SIO_000300: 3.048906e6

ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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SIO_000300: 6.386e0

MQ
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SIO_000300: 5.685e1

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.624e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65636
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.435132032146958e-4
allele num: 13936
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.268e0

VQSLOD
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InbreedingCoeff
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SIO_000300: 8.0e-4

MQRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
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SIO_000300: 3.05565e6

BaseQRankSum
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SIO_000300: -2.212e0

QD
type: SiteQuality
SIO_000300: 1.324e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.523554147114388e-5
allele num: 65636
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11548
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South Asian
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allele frequency: 0.0e0
allele num: 13936
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.05565e6

FS
type: SiteQuality
SIO_000300: 3.268e0

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.212e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 2
allele frequency: 1.931993817619784e-4
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65782
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.098e1

ReadPosRankSum
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SIO_000300: 3.22e0

VQSLOD
type: SiteQuality
SIO_000300: -6.405e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.533e1

FS
type: SiteQuality
SIO_000300: 2.448e0

DP
type: SiteQuality
SIO_000300: 3.059589e6

MQ
type: SiteQuality
SIO_000300: 5.988e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66050
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South Asian
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allele frequency: 6.612881893929374e-5
allele num: 15122
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.636435539151068e-4
allele num: 15172
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.101851851851852e-4
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026909222992402e-5
allele num: 66074
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Other
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 6.575486586007364e-5
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.513225591671206e-5
allele num: 66084
num of homozygotes: 0

Other
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African
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East Asian
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

ReadPosRankSum
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FS
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MQ
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VQSLOD
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QD
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10372
num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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European (Non-Finnish)
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512264464809606e-5
allele num: 66126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 3.071402e6

QD
type: SiteQuality
SIO_000300: 1.146e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

GenotypeQuality
all individuals: 1504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.518055012384304e-5
allele num: 15342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.473830477072719e-4
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512264464809606e-5
allele num: 66126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

QD
type: SiteQuality
SIO_000300: 1.146e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 3.071402e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2497
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1192
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variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026634382566586e-5
allele num: 66080
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.305483028720627e-4
allele num: 15320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

DP
type: SiteQuality
SIO_000300: 3.070529e6

GenotypeQuality
all individuals: 39187
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1132
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.304121022430882e-4
allele num: 15336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 4.501e0

VQSLOD
type: SiteQuality
SIO_000300: 7.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

QD
type: SiteQuality
SIO_000300: 1.041e1

DP
type: SiteQuality
SIO_000300: 3.069976e6

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39185
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 10062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
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GenotypeQuality
all individuals: 2514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.785697755149271e-4
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512355948095944e-5
allele num: 66122
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.122e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.032e1

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 3.070834e6

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.11e-1

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39210
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.323015735777278e-4
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 67
allele frequency: 1.013155905035536e-3
allele num: 66130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.482561908466225e-5
allele num: 15426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.074402e6

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 1116
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variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39166
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-5
allele num: 66120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

QD
type: SiteQuality
SIO_000300: 1.11e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 4.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.371e0

VQSLOD
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.67e-1

DP
type: SiteQuality
SIO_000300: 3.064579e6

GenotypeQuality
all individuals: 39168
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 1139
bin: 8.75e1
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GenotypeQuality
all individuals: 169
bin: 3.25e1
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GenotypeQuality
all individuals: 10087
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779794e-5
allele num: 66120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

DP
type: SiteQuality
SIO_000300: 3.064056e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.173e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 1379
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GenotypeQuality
all individuals: 168
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 39166
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.75e1
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GenotypeQuality
all individuals: 9845
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variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513958699206686e-5
allele num: 66052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.201e0

FS
type: SiteQuality
SIO_000300: 3.812e0

VQSLOD
type: SiteQuality
SIO_000300: -4.156e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.26e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.808e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-1

DP
type: SiteQuality
SIO_000300: 3.060887e6

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 2506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514738404677512e-5
allele num: 66018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

QD
type: SiteQuality
SIO_000300: 1.498e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

DP
type: SiteQuality
SIO_000300: 3.058993e6

FS
type: SiteQuality
SIO_000300: 9.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39164
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516852228255923e-5
allele num: 65926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 3.054902e6

VQSLOD
type: SiteQuality
SIO_000300: 7.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 1.756e0

MQRankSum
type: SiteQuality
SIO_000300: -1.181e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.806e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9359
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516852228255923e-5
allele num: 65926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 3.054819e6

FS
type: SiteQuality
SIO_000300: 5.34e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.113e1

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
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variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39161
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14662
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.015e1

MQ
type: SiteQuality
SIO_000300: 5.888e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

FS
type: SiteQuality
SIO_000300: 2.176e0

DP
type: SiteQuality
SIO_000300: 3.040112e6

GenotypeQuality
all individuals: 8148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39160
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 433
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

DP
type: SiteQuality
SIO_000300: 3.038901e6

FS
type: SiteQuality
SIO_000300: 3.039e0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7908
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39161
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.884207627702051e-5
allele num: 14526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.035563e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.012e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
all individuals: 7769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2745
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variant carriers: 0

GenotypeQuality
all individuals: 39160
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2369
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GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 1136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.942124684404739e-4
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.067333495974628e-4
allele num: 65584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.035146e6

QD
type: SiteQuality
SIO_000300: 1.378e1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 2305
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GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 1471
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.735202492211838e-5
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.65e0

DP
type: SiteQuality
SIO_000300: 3.025841e6

QD
type: SiteQuality
SIO_000300: 1.618e1

GenotypeQuality
all individuals: 1137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 490
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GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 1470
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GenotypeQuality
all individuals: 2301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7223
bin: 6.25e1
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GenotypeQuality
all individuals: 39154
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528397627926881e-5
allele num: 65428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.828e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 2.178e0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 3.024359e6

GenotypeQuality
all individuals: 3298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
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GenotypeQuality
all individuals: 1743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
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variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39154
bin: 9.75e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.633920296570899e-4
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.415e0

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

FS
type: SiteQuality
SIO_000300: 2.419e0

QD
type: SiteQuality
SIO_000300: 1.339e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.020633e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.530362389813908e-5
allele num: 65344
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.701e0

MQRankSum
type: SiteQuality
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DP
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
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SIO_000300: 5.22e-1

BaseQRankSum
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SIO_000300: 1.17e0

InbreedingCoeff
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SIO_000300: 1.2e-3

QD
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MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
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SIO_000300: 2.24e0

ClippingRankSum
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SIO_000300: -2.139e0

QD
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MQRankSum
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FS
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SIO_000300: 1.731e0

BaseQRankSum
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SIO_000300: -3.444e0

VQSLOD
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DP
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SIO_000300: 3.018132e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14022
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65256
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.32e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.875e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.779e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

DP
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SIO_000300: 3.015592e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -1.271e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.073046310807904e-5
allele num: 65082
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
type: SiteQuality
SIO_000300: 5.71e-1

FS
type: SiteQuality
SIO_000300: 2.437e0

DP
type: SiteQuality
SIO_000300: 3.009587e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.824e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538272212650751e-5
allele num: 65008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.47e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 3.006088e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.854049243547909e-3
allele num: 13484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.59e0

DP
type: SiteQuality
SIO_000300: 3.003704e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.416196974191635e-5
allele num: 13484
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64780
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13316
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African
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allele count: 1
allele frequency: 9.895111814763506e-5
allele num: 10106
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.289999999999999e0

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.18e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.548035542896065e-5
allele num: 64598
num of homozygotes: 0

South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.122e0

FS
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 11
allele frequency: 1.094963169420665e-3
allele num: 10046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551397809426293e-5
allele num: 64458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.58e0

QD
type: SiteQuality
SIO_000300: 1.357e1

DP
type: SiteQuality
SIO_000300: 2.988568e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.605071205279611e-4
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.086787765874864e-4
allele num: 64410
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.803964413922273e-5
allele num: 12814
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.986416e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.408e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.338269680436477e-4
allele num: 12830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.468e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.53e-1

DP
type: SiteQuality
SIO_000300: 2.984075e6

GenotypeQuality
all individuals: 1743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1469
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variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561231499406732e-5
allele num: 64052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

FS
type: SiteQuality
SIO_000300: 1.103e0

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.251e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

DP
type: SiteQuality
SIO_000300: 2.978912e6

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5267
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1469
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39133
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 615
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560646732005743e-5
allele num: 64076
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.273e0

QD
type: SiteQuality
SIO_000300: 1.183e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.9786e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

GenotypeQuality
all individuals: 39133
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5267
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variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.121293464011486e-5
allele num: 64076
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.9786e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

QD
type: SiteQuality
SIO_000300: 1.183e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.273e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.724707068161774e-5
allele num: 63496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.259e1

DP
type: SiteQuality
SIO_000300: 2.970236e6

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e0

GenotypeQuality
all individuals: 579
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575944778894947e-5
allele num: 63454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.82e-1

FS
type: SiteQuality
SIO_000300: 1.557e0

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.202e0

DP
type: SiteQuality
SIO_000300: 2.969638e6

QD
type: SiteQuality
SIO_000300: 9.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39131
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 3
allele frequency: 2.607335303320007e-4
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.612e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 5.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

DP
type: SiteQuality
SIO_000300: 2.968668e6

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0