11-1018134-G-GTGACGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018134
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018141
    reference: chr 11
allele count: 509
allele frequency: 4.222594614325298e-3
allele num: 120542
alternate allele: GTGACGGT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4666_4667insACCGTCA
  hgvsp: ENSP00000406861.2:p.Thr1556AsnfsTer152
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 54440
  bin: 9.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 54652
  bin: 9.75e1
  variant carriers: 345
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 6.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.75e1
  variant carriers: 5
hgvs: p.Thr1556AsnfsTer152
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 45
  allele frequency: 6.816116328385338e-3
  allele num: 6602
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 4
  allele frequency: 4.484304932735426e-3
  allele num: 892
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-1018134-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018134
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018134
    reference: chr 11
allele count: 9
allele frequency: 7.466277314131174e-5
allele num: 120542
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4667C>A
  hgvsp: ENSP00000406861.2:p.Thr1556Asn
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54440
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54652
  bin: 9.75e1
  variant carriers: 9
hgvs: p.Thr1556Asn
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9822
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 9
  allele frequency: 1.044568245125348e-3
  allele num: 8616
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

11-1018136-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018136
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018136
    reference: chr 11
allele count: 3
allele frequency: 2.869934565491907e-5
allele num: 104532
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4665A>G
  hgvsp: ENST00000421673.2:c.4665A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44422
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg1555Arg
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.569858712715856e-4
  allele num: 12740
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7286
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

11-1018136-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018136
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018136
    reference: chr 11
allele count: 3743
allele frequency: 3.580721692878736e-2
allele num: 104532
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4665A>C
  hgvsp: ENSP00000406861.2:p.Arg1555Ser
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 54455
  bin: 9.75e1
  variant carriers: 2403
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 7287
  bin: 2.5e0
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 8.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 6.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 6.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 44422
  bin: 9.75e1
  variant carriers: 2931
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 9.25e1
  variant carriers: 55
hgvs: p.Arg1555Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1520
  allele frequency: 1.19309262166405e-1
  allele num: 12740
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 128
  allele frequency: 1.175822156898769e-2
  allele num: 10886
  num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

11-1018137-CTGGTGCG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018137
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018130
    reference: chr 11
allele count: 508
allele frequency: 4.218428220288314e-3
allele num: 120424
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4657_4663delCGCACCA
  hgvsp: ENSP00000406861.2:p.Arg1553GlufsTer37
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 54457
  bin: 9.75e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 54640
  bin: 9.75e1
  variant carriers: 345
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 6.25e1
  variant carriers: 21
hgvs: p.Arg1553GlufsTer37
num of homozygotes: 0
population: Other
  type: Population
  allele count: 4
  allele frequency: 4.484304932735426e-3
  allele num: 892
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 44
  allele frequency: 6.668687481054865e-3
  allele num: 6598
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: CTGGTGCG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

11-1018138-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018138
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018138
    reference: chr 11
allele count: 3
allele frequency: 3.6836030549348e-5
allele num: 81442
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4663A>T
  hgvsp: ENSP00000406861.2:p.Arg1555Ter
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: stop gained
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54098
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34274
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1555Ter
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8082
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.479727730097662e-4
  allele num: 6758
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

11-1018138-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018138
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018138
    reference: chr 11
allele count: 24050
allele frequency: 2.953021782372732e-1
allele num: 81442
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4663A>G
  hgvsp: ENSP00000406861.2:p.Arg1555Gly
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 528
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.25e1
  variant carriers: 386
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 574
genotype depth: GenotypeDepth
  all individuals: 54098
  bin: 9.75e1
  variant carriers: 20342
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 377
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 34274
  bin: 9.75e1
  variant carriers: 22739
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 6.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 18169
  bin: 2.5e0
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 6.75e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.5e0
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 77
hgvs: p.Arg1555Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 13022
  allele frequency: 2.852324002278004e-1
  allele num: 45654
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 189
  allele frequency: 3.129139072847682e-1
  allele num: 604
  num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-1018139-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018139
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018139
    reference: chr 11
allele count: 3
allele frequency: 2.526485994845968e-5
allele num: 118742
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4662C>A
  hgvsp: ENST00000421673.2:c.4662C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53995
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53491
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1554Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.17096018735363e-4
  allele num: 8540
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9746
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-1018140-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018140
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018140
    reference: chr 11
allele count: 56
allele frequency: 4.69208211143695e-4
allele num: 119350
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4661C>G
  hgvsp: ENSP00000406861.2:p.Thr1554Ser
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54154
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54044
  bin: 9.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Thr1554Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 4
  allele frequency: 3.484927687750479e-4
  allele num: 11478
  num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 2.044153720359771e-4
  allele num: 9784
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

11-1018142-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018142
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018143
    reference: chr 11
allele count: 2
allele frequency: 1.988981045010641e-5
allele num: 100554
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4658_4659insT
  hgvsp: ENSP00000406861.2:p.Thr1554HisfsTer152
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53999
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8320
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41568
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1554HisfsTer152
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10570
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8114
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

11-1018142-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018142
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018142
    reference: chr 11
allele count: 3791
allele frequency: 3.77011357081767e-2
allele num: 100554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4659C>A
  hgvsp: ENST00000421673.2:c.4659C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 53999
  bin: 9.75e1
  variant carriers: 2433
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.5e0
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 6.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 1.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 6.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 9.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 7.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 8320
  bin: 2.5e0
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 8.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 8.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 7.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 41568
  bin: 9.75e1
  variant carriers: 2973
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.75e1
  variant carriers: 63
hgvs: p.Arg1553Arg
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 131
  allele frequency: 1.239356669820246e-2
  allele num: 10570
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 31
  allele frequency: 4.329608938547486e-2
  allele num: 716
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-1018143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018143
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018143
    reference: chr 11
allele count: 43
allele frequency: 3.719980621496297e-4
allele num: 115592
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4658G>A
  hgvsp: ENSP00000406861.2:p.Arg1553His
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53995
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50830
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg1553His
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 840
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9544
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

11-1018144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018144
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018144
    reference: chr 11
allele count: 2
allele frequency: 2.304572271386431e-5
allele num: 86784
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4657C>T
  hgvsp: ENSP00000406861.2:p.Arg1553Cys
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54066
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15549
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36606
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg1553Cys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11806
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8438
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

11-1018144-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018144
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018144
    reference: chr 11
allele count: 24364
allele frequency: 2.80742994100295e-1
allele num: 86784
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4657C>G
  hgvsp: ENSP00000406861.2:p.Arg1553Gly
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 538
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.25e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 54066
  bin: 9.75e1
  variant carriers: 20844
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 542
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 446
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 459
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 15549
  bin: 2.5e0
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 6.75e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 6.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 36606
  bin: 9.75e1
  variant carriers: 23059
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 85
hgvs: p.Arg1553Gly
num of homozygotes: 0
population: Other
  type: Population
  allele count: 191
  allele frequency: 2.920489296636086e-1
  allele num: 654
  num of homozygotes: 0
population: African
  type: Population
  allele count: 2083
  allele frequency: 2.923919146546884e-1
  allele num: 7124
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-1018144-G-GGTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018144
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018149
    reference: chr 11
allele count: 2
allele frequency: 2.304572271386431e-5
allele num: 86784
alternate allele: GGTTTT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4656_4657insAAAAC
  hgvsp: ENSP00000406861.2:p.Arg1553LysfsTer41
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54066
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36606
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15549
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg1553LysfsTer41
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8438
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5584
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-1018144-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018144
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018144
    reference: chr 11
allele count: 1
allele frequency: 1.152286135693215e-5
allele num: 86784
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4657C>A
  hgvsp: ENSP00000406861.2:p.Arg1553Ser
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54066
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15549
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36606
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg1553Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 1.185114956150747e-4
  allele num: 8438
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 48858
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

11-1018146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018146
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018146
    reference: chr 11
allele count: 61
allele frequency: 5.053517579613613e-4
allele num: 120708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4655C>T
  hgvsp: ENSP00000406861.2:p.Thr1552Ile
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54350
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52819
  bin: 9.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Thr1552Ile
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.511944360447536e-4
  allele num: 6614
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 32
  allele frequency: 4.796882026682656e-4
  allele num: 66710
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

11-1018146-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018146
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018146
    reference: chr 11
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4655C>G
  hgvsp: ENSP00000406861.2:p.Thr1552Arg
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52819
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr1552Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8624
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

11-1018147-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018147
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018147
    reference: chr 11
allele count: 1417
allele frequency: 1.204645152514707e-2
allele num: 117628
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4654A>C
  hgvsp: ENSP00000406861.2:p.Thr1552Pro
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 54358
  bin: 9.75e1
  variant carriers: 613
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 50071
  bin: 9.75e1
  variant carriers: 972
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 7.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 8.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 6.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 9.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 6.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.25e1
  variant carriers: 34
hgvs: p.Thr1552Pro
num of homozygotes: 0
population: African
  type: Population
  allele count: 65
  allele frequency: 6.724601696668736e-3
  allele num: 9666
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 37
  allele frequency: 4.349870679520339e-3
  allele num: 8506
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

11-1018151-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018151
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018151
    reference: chr 11
allele count: 13298
allele frequency: 1.285128918783099e-1
allele num: 103476
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4650T>C
  hgvsp: ENST00000421673.2:c.4650T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 54411
  bin: 9.75e1
  variant carriers: 11628
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.75e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 6.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 8.75e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.5e0
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 7559
  bin: 2.5e0
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 7.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 9.25e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 41673
  bin: 9.75e1
  variant carriers: 11466
hgvs: p.Thr1550Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 579
  allele frequency: 5.758901929580267e-2
  allele num: 10054
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1037
  allele frequency: 1.907652685798381e-1
  allele num: 5436
  num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

11-1018151-AGTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018151
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018148
    reference: chr 11
allele count: 12
allele frequency: 1.159689203293517e-4
allele num: 103476
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4647_4649delCAC
  hgvsp: ENSP00000406861.2:p.Thr1550del
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54411
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41673
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7559
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr1550del
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8428
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 5
  allele frequency: 4.973145016908693e-4
  allele num: 10054
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AGTG
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

11-1018152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018152
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018152
    reference: chr 11
allele count: 4
allele frequency: 3.312135665076842e-5
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4649C>T
  hgvsp: ENSP00000406861.2:p.Thr1550Ile
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54398
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53517
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr1550Ile
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66724
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-1018155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018155
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018155
    reference: chr 11
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4646C>T
  hgvsp: ENSP00000406861.2:p.Pro1549Leu
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54409
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53513
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro1549Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.646031471554557e-5
  allele num: 11566
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-1018155-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018155
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018155
    reference: chr 11
allele count: 3
allele frequency: 2.484142887898912e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4646C>A
  hgvsp: ENSP00000406861.2:p.Pro1549His
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54409
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53513
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro1549His
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 896
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8628
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

11-1018156-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018156
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018156
    reference: chr 11
allele count: 1099
allele frequency: 9.100695594567738e-3
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4645C>T
  hgvsp: ENSP00000406861.2:p.Pro1549Ser
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 54413
  bin: 9.75e1
  variant carriers: 1042
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53557
  bin: 9.75e1
  variant carriers: 1097
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Pro1549Ser
num of homozygotes: 5
population: European (Non-Finnish)
  type: Population
  allele count: 50
  allele frequency: 7.49243264303054e-4
  allele num: 66734
  num of homozygotes: 0
population: African
  type: Population
  allele count: 968
  allele frequency: 9.875535604978576e-2
  allele num: 9802
  num of homozygotes: 5
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-1018157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018157
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018157
    reference: chr 11
allele count: 11361
allele frequency: 1.047618169411504e-1
allele num: 108446
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4644C>T
  hgvsp: ENST00000421673.2:c.4644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 54452
  bin: 9.75e1
  variant carriers: 9801
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 2.5e0
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 9.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.25e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 43288
  bin: 9.75e1
  variant carriers: 9580
hgvs: p.Asn1548Asn
num of homozygotes: 0
population: African
  type: Population
  allele count: 845
  allele frequency: 9.432909131502568e-2
  allele num: 8958
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 898
  allele frequency: 1.158410732714138e-1
  allele num: 7752
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

11-1018157-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018157
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018157
    reference: chr 11
allele count: 1098
allele frequency: 1.012485476642753e-2
allele num: 108446
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4644C>G
  hgvsp: ENSP00000406861.2:p.Asn1548Lys
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54452
  bin: 9.75e1
  variant carriers: 1043
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43288
  bin: 9.75e1
  variant carriers: 1095
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 2
hgvs: p.Asn1548Lys
num of homozygotes: 5
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5818
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 75
  allele frequency: 6.925207756232687e-3
  allele num: 10830
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

11-1018157-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018157
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018157
    reference: chr 11
allele count: 47
allele frequency: 4.333954226066429e-4
allele num: 108446
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4644C>A
  hgvsp: ENSP00000406861.2:p.Asn1548Lys
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54452
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43288
  bin: 9.75e1
  variant carriers: 22
hgvs: p.Asn1548Lys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 8
  allele frequency: 1.375042970092815e-3
  allele num: 5818
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10830
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

11-1018161-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018161
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018161
    reference: chr 11
allele count: 4
allele frequency: 3.312355084465055e-5
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4640C>T
  hgvsp: ENSP00000406861.2:p.Pro1547Leu
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54434
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53362
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1547Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 898
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8628
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

11-1018162-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018162
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018162
    reference: chr 11
allele count: 56
allele frequency: 4.63783479369917e-4
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4639C>A
  hgvsp: ENSP00000406861.2:p.Pro1547Thr
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54435
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53369
  bin: 9.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 993
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Pro1547Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.511944360447536e-4
  allele num: 6614
  num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 2.036245163917736e-4
  allele num: 9822
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

11-1018163-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018163
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018163
    reference: chr 11
allele count: 13062
allele frequency: 1.285579307901264e-1
allele num: 101604
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4638T>C
  hgvsp: ENST00000421673.2:c.4638T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.75e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 54501
  bin: 9.75e1
  variant carriers: 11457
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.25e1
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 8.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 8438
  bin: 2.5e0
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 40879
  bin: 9.75e1
  variant carriers: 11270
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.5e0
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 8.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 6.25e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 9.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.25e1
  variant carriers: 126
hgvs: p.Thr1546Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1009
  allele frequency: 1.905931242916509e-1
  allele num: 5294
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 5850
  allele frequency: 1.020443762210438e-1
  allele num: 57328
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-1018163-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018163
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018163
    reference: chr 11
allele count: 1
allele frequency: 9.842132199519704e-6
allele num: 101604
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4638T>G
  hgvsp: ENST00000421673.2:c.4638T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54501
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40879
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8438
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1546Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 57328
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7102
  num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

11-1018166-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018166
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018166
    reference: chr 11
allele count: 12937
allele frequency: 1.257460002721565e-1
allele num: 102882
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4635T>C
  hgvsp: ENST00000421673.2:c.4635T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 54527
  bin: 9.75e1
  variant carriers: 11363
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.75e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 7.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.25e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 1.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.25e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 41176
  bin: 9.75e1
  variant carriers: 11174
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.5e0
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 7781
  bin: 2.5e0
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 9.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 3.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 6.25e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 5.25e1
  variant carriers: 137
hgvs: p.Ile1545Ile
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 3394
  allele frequency: 2.564606317062113e-1
  allele num: 13234
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1111
  allele frequency: 1.306444026340546e-1
  allele num: 8504
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-1018167-ATCG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018167
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018164
    reference: chr 11
allele count: 2024
allele frequency: 1.931629478345517e-2
allele num: 104782
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4631_4633delCGA
  hgvsp: ENSP00000406861.2:p.Thr1544del
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 8.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 54588
  bin: 9.75e1
  variant carriers: 1489
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 7282
  bin: 2.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 41521
  bin: 9.75e1
  variant carriers: 1514
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 6.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 7.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 8.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 8.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.5e0
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 6.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 7.25e1
  variant carriers: 26
hgvs: p.Thr1544del
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 701
  allele frequency: 1.176569318563276e-2
  allele num: 59580
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 128
  allele frequency: 1.197604790419162e-2
  allele num: 10688
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: ATCG
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

11-1018168-T-TGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018168
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018170
    reference: chr 11
allele count: 870
allele frequency: 8.315173758458539e-3
allele num: 104628
alternate allele: TGG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4632_4633insCC
  hgvsp: ENSP00000406861.2:p.Ile1545ProfsTer48
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 52485
  bin: 9.75e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 4461
  bin: 2.5e0
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 41887
  bin: 9.75e1
  variant carriers: 594
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 6.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 7.75e1
  variant carriers: 20
hgvs: p.Ile1545ProfsTer48
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 23
  allele frequency: 4.271916790490341e-3
  allele num: 5384
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 17
  allele frequency: 1.565954310980103e-3
  allele num: 10856
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-1018169-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018169
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018169
    reference: chr 11
allele count: 10075
allele frequency: 1.332178558205956e-1
allele num: 75628
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4632G>C
  hgvsp: ENST00000421673.2:c.4632G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 52721
  bin: 9.75e1
  variant carriers: 9958
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 6.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 18584
  bin: 2.5e0
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 9.25e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.5e0
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 8.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 6.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 28819
  bin: 9.75e1
  variant carriers: 9137
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 7.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.25e1
  variant carriers: 59
hgvs: p.Thr1544Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 6028
  allele frequency: 1.356008458181491e-1
  allele num: 44454
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 978
  allele frequency: 1.305740987983979e-1
  allele num: 7490
  num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

11-1018169-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018169
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018169
    reference: chr 11
allele count: 53
allele frequency: 7.007986460041255e-4
allele num: 75628
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4632G>A
  hgvsp: ENST00000421673.2:c.4632G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52721
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28819
  bin: 9.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18584
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Thr1544Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 31
  allele frequency: 6.973500697350069e-4
  allele num: 44454
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.476473501733531e-4
  allele num: 4038
  num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

11-1018170-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018170
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018170
    reference: chr 11
allele count: 1
allele frequency: 1.02358336062889e-5
allele num: 97696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4631C>T
  hgvsp: ENSP00000406861.2:p.Thr1544Met
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52558
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7822
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39008
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1544Met
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6716
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10162
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-1018170-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018170
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018170
    reference: chr 11
allele count: 60
allele frequency: 6.141500163773338e-4
allele num: 97696
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4631C>A
  hgvsp: ENSP00000406861.2:p.Thr1544Lys
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52558
  bin: 9.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7822
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39008
  bin: 9.75e1
  variant carriers: 57
hgvs: p.Thr1544Lys
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 2
  allele frequency: 2.977963073257892e-4
  allele num: 6716
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 2
  allele frequency: 2.747252747252747e-3
  allele num: 728
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-1018170-GTGGTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018170
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018165
    reference: chr 11
allele count: 879
allele frequency: 8.99729773992794e-3
allele num: 97696
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4626_4630delTACCA
  hgvsp: ENSP00000406861.2:p.Thr1543AspfsTer7
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 52558
  bin: 9.75e1
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 6.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 7822
  bin: 2.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 39008
  bin: 9.75e1
  variant carriers: 598
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 23
hgvs: p.Thr1543AspfsTer7
num of homozygotes: 0
population: Other
  type: Population
  allele count: 6
  allele frequency: 8.241758241758242e-3
  allele num: 728
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 25
  allele frequency: 5.042355788624445e-3
  allele num: 4958
  num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: GTGGTA
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

11-1018171-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018171
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018171
    reference: chr 11
allele count: 15
allele frequency: 1.469263017670337e-4
allele num: 102092
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4630A>G
  hgvsp: ENSP00000406861.2:p.Thr1544Ala
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54083
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41161
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1544Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.178967224711153e-4
  allele num: 8482
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 3
  allele frequency: 4.098360655737705e-3
  allele num: 732
  num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

11-1018172-GGTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018172
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018169
    reference: chr 11
allele count: 1
allele frequency: 8.50933474021001e-6
allele num: 117518
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4626_4628delTAC
  hgvsp: ENSP00000406861.2:p.Thr1544del
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54094
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50109
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1544del
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9610
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 872
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: GGTA
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

11-1018175-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018175
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018175
    reference: chr 11
allele count: 18801
allele frequency: 1.970919993290842e-1
allele num: 95392
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4626T>C
  hgvsp: ENST00000421673.2:c.4626T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 54299
  bin: 9.75e1
  variant carriers: 18061
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 38567
  bin: 9.75e1
  variant carriers: 17919
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 10589
  bin: 2.5e0
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 8.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 7.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 8.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 7.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 74
hgvs: p.Thr1542Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 10535
  allele frequency: 1.945593558395509e-1
  allele num: 54148
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 141
  allele frequency: 2.025862068965517e-1
  allele num: 696
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

11-1018176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018176
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018176
    reference: chr 11
allele count: 4
allele frequency: 3.313233052812935e-5
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4625C>T
  hgvsp: ENSP00000406861.2:p.Thr1542Ile
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51231
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr1542Ile
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 3
  allele frequency: 1.820609297244811e-4
  allele num: 16478
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.017708121310808e-4
  allele num: 9826
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

11-1018177-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018177
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018177
    reference: chr 11
allele count: 3
allele frequency: 2.484019474712682e-5
allele num: 120772
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4624A>T
  hgvsp: ENSP00000406861.2:p.Thr1542Ser
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51228
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1542Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9828
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-1018180-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018180
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018180
    reference: chr 11
allele count: 55
allele frequency: 4.55448824113945e-4
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4621T>G
  hgvsp: ENSP00000406861.2:p.Ser1541Ala
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54660
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51213
  bin: 9.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Ser1541Ala
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 32
  allele frequency: 4.795731798699158e-4
  allele num: 66726
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 4
  allele frequency: 3.455425017277125e-4
  allele num: 11576
  num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

11-1018182-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018182
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018182
    reference: chr 11
allele count: 1
allele frequency: 8.353660574063554e-6
allele num: 119708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4619C>T
  hgvsp: ENSP00000406861.2:p.Thr1540Ile
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54681
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48904
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr1540Ile
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6564
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 882
  num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

11-1018182-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018182
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018182
    reference: chr 11
allele count: 8277
allele frequency: 6.914324857152404e-2
allele num: 119708
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4619C>A
  hgvsp: ENSP00000406861.2:p.Thr1540Asn
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54681
  bin: 9.75e1
  variant carriers: 8361
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 9.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 6.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 48904
  bin: 9.75e1
  variant carriers: 7414
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 7.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 7.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 64
hgvs: p.Thr1540Asn
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 411
  allele frequency: 4.79803875787999e-2
  allele num: 8566
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 752
  allele frequency: 4.579780755176614e-2
  allele num: 16420
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

11-1018186-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018186
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018186
    reference: chr 11
allele count: 7965
allele frequency: 6.655914697329278e-2
allele num: 119668
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4615C>A
  hgvsp: ENSP00000406861.2:p.Pro1539Thr
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54678
  bin: 9.75e1
  variant carriers: 8052
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 8.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 48860
  bin: 9.75e1
  variant carriers: 7128
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 7.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 6.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 54
hgvs: p.Pro1539Thr
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 742
  allele frequency: 4.518329070758739e-2
  allele num: 16422
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 4785
  allele frequency: 7.241003601585909e-2
  allele num: 66082
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

11-1018192-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018192
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018192
    reference: chr 11
allele count: 7699
allele frequency: 6.427080724601386e-2
allele num: 119790
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4609G>A
  hgvsp: ENSP00000406861.2:p.Val1537Ile
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54676
  bin: 9.75e1
  variant carriers: 7797
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 9.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 7.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.5e0
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 48927
  bin: 9.75e1
  variant carriers: 6885
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 6.25e1
  variant carriers: 50
hgvs: p.Val1537Ile
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 4626
  allele frequency: 6.992563032831489e-2
  allele num: 66156
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 59
  allele frequency: 6.689342403628118e-2
  allele num: 882
  num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

11-1018196-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018196
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018196
    reference: chr 11
allele count: 6474
allele frequency: 5.39742884297934e-2
allele num: 119946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4605T>A
  hgvsp: ENST00000421673.2:c.4605T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54681
  bin: 9.75e1
  variant carriers: 6564
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 8.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 6.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 8.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 6.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 9.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 49056
  bin: 9.75e1
  variant carriers: 5778
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 49
hgvs: p.Pro1535Pro
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 327
  allele frequency: 3.812077407321054e-2
  allele num: 8578
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 253
  allele frequency: 3.849665246500304e-2
  allele num: 6572
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-1018199-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018199
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018199
    reference: chr 11
allele count: 2
allele frequency: 1.655629139072848e-5
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4602T>A
  hgvsp: ENSP00000406861.2:p.His1534Gln
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54660
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50155
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His1534Gln
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16512
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 900
  num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

11-1018200-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018200
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018200
    reference: chr 11
allele count: 88
allele frequency: 7.330889703432189e-4
allele num: 120040
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4601A>T
  hgvsp: ENSP00000406861.2:p.His1534Leu
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54696
  bin: 9.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 49656
  bin: 9.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His1534Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 2
  allele frequency: 2.262443438914027e-3
  allele num: 884
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 3
  allele frequency: 1.838235294117647e-4
  allele num: 16320
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

11-1018202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018202
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018202
    reference: chr 11
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4599C>T
  hgvsp: ENST00000421673.2:c.4599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50127
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His1533His
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16506
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

11-1018204-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018204
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018204
    reference: chr 11
allele count: 2
allele frequency: 1.655656550605143e-5
allele num: 120798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4597C>A
  hgvsp: ENSP00000406861.2:p.His1533Asn
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54689
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50133
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His1533Asn
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8630
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 900
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

11-1018206-G-GCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018206
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018208
    reference: chr 11
allele count: 1
allele frequency: 8.278282753025713e-6
allele num: 120798
alternate allele: GCA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4594_4595insTG
  hgvsp: ENSP00000406861.2:p.Thr1532MetfsTer61
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50133
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1532MetfsTer61
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.498351813005694e-5
  allele num: 66740
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16512
  num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-1018207-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018207
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018207
    reference: chr 11
allele count: 10440
allele frequency: 9.473168430031033e-2
allele num: 110206
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4594A>G
  hgvsp: ENSP00000406861.2:p.Thr1532Ala
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55171
  bin: 9.75e1
  variant carriers: 9169
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 191
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 42908
  bin: 9.75e1
  variant carriers: 9476
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 7.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 7.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 4445
  bin: 2.5e0
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 6.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.75e1
  variant carriers: 64
hgvs: p.Thr1532Ala
num of homozygotes: 0
population: Other
  type: Population
  allele count: 74
  allele frequency: 8.788598574821853e-2
  allele num: 842
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 823
  allele frequency: 8.705309921726254e-2
  allele num: 9454
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

11-1018207-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018207
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018206
    reference: chr 11
allele count: 2
allele frequency: 1.814783224143876e-5
allele num: 110206
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4593delC
  hgvsp: ENSP00000406861.2:p.Thr1532HisfsTer60
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55171
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4445
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42908
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr1532HisfsTer60
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.233211549031653e-5
  allele num: 61858
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9454
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: TG
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

11-1018207-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018207
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018205
    reference: chr 11
allele count: 1
allele frequency: 9.07391612071938e-6
allele num: 110206
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4445
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42908
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9218
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.616605774515827e-5
  allele num: 61858
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5966
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9454
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
reference allele: TGG
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

11-1018208-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018208
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018208
    reference: chr 11
allele count: 10509
allele frequency: 9.541839180649379e-2
allele num: 110136
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4593C>T
  hgvsp: ENST00000421673.2:c.4593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55229
  bin: 9.75e1
  variant carriers: 9252
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.25e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 2.5e0
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 8.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 42793
  bin: 9.75e1
  variant carriers: 9578
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 6.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 1.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.5e0
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 8.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 7.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 5.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.75e1
  variant carriers: 60
hgvs: p.Ser1531Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2622
  allele frequency: 1.733897632588282e-1
  allele num: 15122
  num of homozygotes: 0
population: African
  type: Population
  allele count: 715
  allele frequency: 7.822757111597374e-2
  allele num: 9140
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

11-1018208-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018208
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018208
    reference: chr 11
allele count: 1
allele frequency: 9.079683300646473e-6
allele num: 110136
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4593C>A
  hgvsp: ENST00000421673.2:c.4593C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42793
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Ser1531Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9574
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9140
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-1018215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018215
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018215
    reference: chr 11
allele count: 2
allele frequency: 1.660054117764239e-5
allele num: 120478
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4586C>T
  hgvsp: ENSP00000406861.2:p.Thr1529Ile
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55250
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50731
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1529Ile
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9788
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.501907422426482e-5
  allele num: 66582
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

11-1018215-G-GCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018215
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018217
    reference: chr 11
allele count: 2434
allele frequency: 2.020285861319079e-2
allele num: 120478
alternate allele: GCA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4585_4586insTG
  hgvsp: ENSP00000406861.2:p.Thr1529MetfsTer64
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55250
  bin: 9.75e1
  variant carriers: 2479
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 50731
  bin: 9.75e1
  variant carriers: 2123
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 8.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 6.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 9.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 22
hgvs: p.Thr1529MetfsTer64
num of homozygotes: 0
population: Other
  type: Population
  allele count: 26
  allele frequency: 2.9082774049217e-2
  allele num: 894
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 78
  allele frequency: 1.182893539581438e-2
  allele num: 6594
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

11-1018216-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018216
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018216
    reference: chr 11
allele count: 31
allele frequency: 2.572400630653058e-4
allele num: 120510
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4585A>G
  hgvsp: ENSP00000406861.2:p.Thr1529Ala
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55248
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51142
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr1529Ala
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2
  allele frequency: 1.733402669440111e-4
  allele num: 11538
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 894
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-1018217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018217
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018217
    reference: chr 11
allele count: 33
allele frequency: 2.756846167983827e-4
allele num: 119702
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4584C>T
  hgvsp: ENST00000421673.2:c.4584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55270
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50649
  bin: 9.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 1
hgvs: p.His1528His
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 886
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.029385034837928e-4
  allele num: 6602
  num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum

11-1018217-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018217
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018217
    reference: chr 11
allele count: 81
allele frequency: 6.766804230505756e-4
allele num: 119702
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4584C>A
  hgvsp: ENSP00000406861.2:p.His1528Gln
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55270
  bin: 9.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50649
  bin: 9.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His1528Gln
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.70170553428472e-5
  allele num: 11492
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 3
  allele frequency: 1.840716652349982e-4
  allele num: 16298
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-1018218-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018218
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018218
    reference: chr 11
allele count: 2014
allele frequency: 1.670925563335877e-2
allele num: 120532
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4583A>C
  hgvsp: ENSP00000406861.2:p.His1528Pro
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55260
  bin: 9.75e1
  variant carriers: 2055
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 9.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 6.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 7.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 6.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 8.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 50741
  bin: 9.75e1
  variant carriers: 1740
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 16
hgvs: p.His1528Pro
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1144
  allele frequency: 1.717459840864735e-2
  allele num: 66610
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 128
  allele frequency: 1.48560817084494e-2
  allele num: 8616
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

11-1018220-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018220
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018220
    reference: chr 11
allele count: 1958
allele frequency: 1.625813737212701e-2
allele num: 120432
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4581A>T
  hgvsp: ENST00000421673.2:c.4581A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55263
  bin: 9.75e1
  variant carriers: 1996
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 50664
  bin: 9.75e1
  variant carriers: 1691
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 9.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 6.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.25e1
  variant carriers: 14
hgvs: p.Ser1527Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 156
  allele frequency: 1.352054082163287e-2
  allele num: 11538
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 22
  allele frequency: 2.466367713004484e-2
  allele num: 892
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

11-1018220-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018220
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018220
    reference: chr 11
allele count: 16
allele frequency: 1.328550551348479e-4
allele num: 120432
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4581A>C
  hgvsp: ENST00000421673.2:c.4581A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55263
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50664
  bin: 9.75e1
  variant carriers: 12
hgvs: p.Ser1527Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.215214485356665e-4
  allele num: 16458
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 892
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-1018222-A-AGGAGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018222
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018228
    reference: chr 11
allele count: 21
allele frequency: 1.741726797710873e-4
allele num: 120570
alternate allele: AGGAGGG
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4578_4579insCCCTCC
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55264
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50803
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His1526_Ser1527insProSer
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16468
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8618
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-1018222-AAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018222
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018220
    reference: chr 11
allele count: 1613
allele frequency: 1.33781205938459e-2
allele num: 120570
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4577_4578delAT
  hgvsp: ENSP00000406861.2:p.His1526LeufsTer10
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55264
  bin: 9.75e1
  variant carriers: 1646
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 9.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 50803
  bin: 9.75e1
  variant carriers: 1385
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 8.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.25e1
  variant carriers: 12
hgvs: p.His1526LeufsTer10
num of homozygotes: 0
population: Other
  type: Population
  allele count: 18
  allele frequency: 2.008928571428572e-2
  allele num: 896
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 140
  allele frequency: 1.211282228759301e-2
  allele num: 11558
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: AAT
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

11-1018222-AATGTAGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018222
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018215
    reference: chr 11
allele count: 5
allele frequency: 4.14696856597827e-5
allele num: 120570
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4572_4578delGCTACAT
  hgvsp: ENSP00000406861.2:p.Leu1525HisfsTer65
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55264
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50803
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Leu1525HisfsTer65
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9798
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 4.50220608097968e-5
  allele num: 66634
  num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: AATGTAGC
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

11-1018226-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018226
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018226
    reference: chr 11
allele count: 1529
allele frequency: 1.269511790102956e-2
allele num: 120440
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4575A>C
  hgvsp: ENST00000421673.2:c.4575A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 55260
  bin: 9.75e1
  variant carriers: 1571
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 50739
  bin: 9.75e1
  variant carriers: 1312
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 9.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 6.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 8.25e1
  variant carriers: 19
hgvs: p.Leu1525Leu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 108
  allele frequency: 1.253772927791967e-2
  allele num: 8614
  num of homozygotes: 0
population: African
  type: Population
  allele count: 169
  allele frequency: 1.726956877171469e-2
  allele num: 9786
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/11-1018227-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018227
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018227
    reference: chr 11
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4574T>G
  hgvsp: ENSP00000406861.2:p.Leu1525Arg
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55260
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu1525Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11576
  num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

11-1018228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018228
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018228
    reference: chr 11
allele count: 12877
allele frequency: 1.338648980185874e-1
allele num: 96194
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4573C>T
  hgvsp: ENST00000421673.2:c.4573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.25e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 55956
  bin: 9.75e1
  variant carriers: 11735
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.5e0
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 11228
  bin: 2.5e0
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 5.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 8.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 6.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 7.25e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 37232
  bin: 9.75e1
  variant carriers: 11732
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 9.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 88
hgvs: p.Leu1525Leu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 95
  allele frequency: 1.240208877284595e-1
  allele num: 766
  num of homozygotes: 0
population: African
  type: Population
  allele count: 834
  allele frequency: 1.001922152811149e-1
  allele num: 8324
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

11-1018229-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018229
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018229
    reference: chr 11
allele count: 29814
allele frequency: 3.159802446107213e-1
allele num: 94354
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4572G>C
  hgvsp: ENST00000421673.2:c.4572G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 56438
  bin: 9.75e1
  variant carriers: 28403
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.75e1
  variant carriers: 238
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 6.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 6.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 41537
  bin: 9.75e1
  variant carriers: 28920
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 7.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 12668
  bin: 2.5e0
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 9.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 64
hgvs: p.Ser1524Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2805
  allele frequency: 3.615622583139985e-1
  allele num: 7758
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 15396
  allele frequency: 2.967045673540181e-1
  allele num: 51890
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-1018230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018230
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018230
    reference: chr 11
allele count: 2
allele frequency: 1.655601728448204e-5
allele num: 120802
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4571C>T
  hgvsp: ENSP00000406861.2:p.Ser1524Leu
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56464
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56477
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser1524Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

11-1018232-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018232
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018232
    reference: chr 11
allele count: 29811
allele frequency: 3.092170774209609e-1
allele num: 96408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4569C>A
  hgvsp: ENST00000421673.2:c.4569C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 56617
  bin: 9.75e1
  variant carriers: 28560
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.75e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.25e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 8.25e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.75e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 11662
  bin: 2.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 8.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 9.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 41890
  bin: 9.75e1
  variant carriers: 28907
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.5e0
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 6.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 6.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 57
hgvs: p.Thr1523Thr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 212
  allele frequency: 2.888283378746594e-1
  allele num: 734
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 5167
  allele frequency: 3.618347338935574e-1
  allele num: 14280
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

11-1018232-GGTAGGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1018232
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 1018226
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 96408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000184956
  ensembl protein: ENSP00000406861
  ensembl transcript: ENST00000421673
  gene symbol: MUC6
  hgvsc: ENST00000421673.2:c.4563_4568delACCTAC
  hgvsp: ENSP00000406861.2:p.Pro1522_Thr1523del
  variant of: http://identifiers.org/hgnc/7517
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1522_Thr1523del
num of homozygotes: 0
reference allele: GGTAGGT

East Asian
type: Population
allele count: 23
allele frequency: 2.669452181987001e-3
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 172
allele frequency: 2.580025800258003e-3
allele num: 66666
num of homozygotes: 0

Latino
type: Population
allele count: 37
allele frequency: 3.202908587257618e-3
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 206
allele frequency: 1.256710590531967e-2
allele num: 16392
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.239869680309509e-3
allele num: 9822
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -7.17e-1

FS
type: SiteQuality
SIO_000300: 4.802e0

MQRankSum
type: SiteQuality
SIO_000300: -2.926e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.504e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

DP
type: SiteQuality
SIO_000300: 1.2168455e7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.802e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.926e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.504e1

DP
type: SiteQuality
SIO_000300: 1.2168455e7

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.189343482397717e-4
allele num: 8408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59276
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.494e0

FS
type: SiteQuality
SIO_000300: 2.3567e1

DP
type: SiteQuality
SIO_000300: 1.2209884e7

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.502e0

MQ
type: SiteQuality
SIO_000300: 5.363e1

QD
type: SiteQuality
SIO_000300: 2.4e0

European (Finnish)
type: Population
allele count: 140
allele frequency: 2.701659590891548e-2
allele num: 5182
num of homozygotes: 0

African
type: Population
allele count: 390
allele frequency: 4.638439581351094e-2
allele num: 8408
num of homozygotes: 0

East Asian
type: Population
allele count: 171
allele frequency: 2.346966785616251e-2
allele num: 7286
num of homozygotes: 0

Other
type: Population
allele count: 31
allele frequency: 4.111405835543767e-2
allele num: 754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1363
allele frequency: 2.299412915851272e-2
allele num: 59276
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.2209884e7

QD
type: SiteQuality
SIO_000300: 2.4e0

MQ
type: SiteQuality
SIO_000300: 5.363e1

VQSLOD
type: SiteQuality
SIO_000300: -5.502e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 2.3567e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.494e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

East Asian
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allele count: 22
allele frequency: 2.55279647249942e-3
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 206
allele frequency: 1.263958767946987e-2
allele num: 16298
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.239869680309509e-3
allele num: 9822
num of homozygotes: 0

Latino
type: Population
allele count: 37
allele frequency: 3.202354163060412e-3
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 173
allele frequency: 2.595960505386993e-3
allele num: 66642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.185e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.886e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

DP
type: SiteQuality
SIO_000300: 1.2222278e7

MQ
type: SiteQuality
SIO_000300: 5.531e1

FS
type: SiteQuality
SIO_000300: 1.8296e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.424e0

QD
type: SiteQuality
SIO_000300: 1.1e0

South Asian
type: Population
allele count: 2
allele frequency: 1.773993258825616e-4
allele num: 11274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
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MQRankSum
type: SiteQuality
SIO_000300: -6.647e0

MQ
type: SiteQuality
SIO_000300: 5.366e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.692e-1

DP
type: SiteQuality
SIO_000300: 1.2281941e7

BaseQRankSum
type: SiteQuality
SIO_000300: -3.127e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 1.6782e1

QD
type: SiteQuality
SIO_000300: 4.66e0

VQSLOD
type: SiteQuality
SIO_000300: 1.592e1

East Asian
type: Population
allele count: 1300
allele frequency: 2.503852080123267e-1
allele num: 5192
num of homozygotes: 0

African
type: Population
allele count: 2044
allele frequency: 3.024563480319621e-1
allele num: 6758
num of homozygotes: 0

Latino
type: Population
allele count: 2358
allele frequency: 2.917594654788419e-1
allele num: 8082
num of homozygotes: 0

South Asian
type: Population
allele count: 4167
allele frequency: 3.696114954763172e-1
allele num: 11274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 970
allele frequency: 2.501289324394018e-1
allele num: 3878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.2281941e7

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.43e-1

QD
type: SiteQuality
SIO_000300: 4.66e0

MQ
type: SiteQuality
SIO_000300: 5.366e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.647e0

FS
type: SiteQuality
SIO_000300: 1.6782e1

VQSLOD
type: SiteQuality
SIO_000300: 1.592e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.127e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.692e-1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.546551190844417e-4
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513042425709617e-5
allele num: 66092
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.129e0

DP
type: SiteQuality
SIO_000300: 1.2064967e7

FS
type: SiteQuality
SIO_000300: 2.188e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e0

VQSLOD
type: SiteQuality
SIO_000300: -2.435e0

MQ
type: SiteQuality
SIO_000300: 5.672e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

QD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.11e-1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461539e-4
allele num: 6500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.828585224529213e-4
allele num: 66272
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.333177788147457e-4
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.272727272727273e-3
allele num: 880
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South Asian
type: Population
allele count: 13
allele frequency: 8.194654563792234e-4
allele num: 15864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.833e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.501e0

DP
type: SiteQuality
SIO_000300: 1.2117449e7

QD
type: SiteQuality
SIO_000300: 4.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.164e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.479107956719897e-5
allele num: 57486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.111e0

MQRankSum
type: SiteQuality
SIO_000300: -4.148e0

VQSLOD
type: SiteQuality
SIO_000300: -3.45e0

FS
type: SiteQuality
SIO_000300: 2.3981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

MQ
type: SiteQuality
SIO_000300: 5.435e1

QD
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

DP
type: SiteQuality
SIO_000300: 1.2078901e7

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

African
type: Population
allele count: 387
allele frequency: 4.769534138526004e-2
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num of homozygotes: 0

East Asian
type: Population
allele count: 171
allele frequency: 2.410487736115027e-2
allele num: 7094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 141
allele frequency: 2.881078872088272e-2
allele num: 4894
num of homozygotes: 0

South Asian
type: Population
allele count: 1553
allele frequency: 1.329623287671233e-1
allele num: 11680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1377
allele frequency: 2.395365828201649e-2
allele num: 57486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.435e1

VQSLOD
type: SiteQuality
SIO_000300: -3.45e0

MQRankSum
type: SiteQuality
SIO_000300: -4.148e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.111e0

FS
type: SiteQuality
SIO_000300: 2.3981e1

QD
type: SiteQuality
SIO_000300: 2.47e0

DP
type: SiteQuality
SIO_000300: 1.2078901e7

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.261712439418417e-3
allele num: 6190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.157962883038412e-4
allele num: 64876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.039356984478936e-3
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
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DP
type: SiteQuality
SIO_000300: 1.206893e7

QD
type: SiteQuality
SIO_000300: 1.377e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

FS
type: SiteQuality
SIO_000300: 2.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

MQ
type: SiteQuality
SIO_000300: 5.376e1

MQRankSum
type: SiteQuality
SIO_000300: -2.869e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.776e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.474e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.093495435752589e-5
allele num: 48858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.59e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.828e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 4.79e0

DP
type: SiteQuality
SIO_000300: 1.218433e7

MQ
type: SiteQuality
SIO_000300: 5.423e1

Latino
type: Population
allele count: 2404
allele frequency: 2.849016354586395e-1
allele num: 8438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1007
allele frequency: 2.331018518518519e-1
allele num: 4320
num of homozygotes: 0

South Asian
type: Population
allele count: 4124
allele frequency: 3.493139081822802e-1
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num of homozygotes: 0

East Asian
type: Population
allele count: 1307
allele frequency: 2.340616045845272e-1
allele num: 5584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13248
allele frequency: 2.711531376642515e-1
allele num: 48858
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

FS
type: SiteQuality
SIO_000300: 1.59e1

MQ
type: SiteQuality
SIO_000300: 5.423e1

MQRankSum
type: SiteQuality
SIO_000300: -6.387e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.828e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

QD
type: SiteQuality
SIO_000300: 4.79e0

DP
type: SiteQuality
SIO_000300: 1.218433e7

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.093495435752589e-5
allele num: 48858
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.828e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.387e0

MQ
type: SiteQuality
SIO_000300: 5.423e1

DP
type: SiteQuality
SIO_000300: 1.218433e7

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-1

FS
type: SiteQuality
SIO_000300: 1.59e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

MQRankSum
type: SiteQuality
SIO_000300: -6.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-1

QD
type: SiteQuality
SIO_000300: 4.79e0

DP
type: SiteQuality
SIO_000300: 1.218433e7

MQ
type: SiteQuality
SIO_000300: 5.423e1

FS
type: SiteQuality
SIO_000300: 1.59e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.828e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.2271714922049e-3
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num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.053124363932424e-4
allele num: 9826
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.032806804374241e-3
allele num: 16460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.204e1

FS
type: SiteQuality
SIO_000300: 6.147e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 1.2169077e7

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.539e0

QD
type: SiteQuality
SIO_000300: 4.89e0

MQRankSum
type: SiteQuality
SIO_000300: -2.716e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.242e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017708121310808e-4
allele num: 9826
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.2169077e7

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.242e0

MQ
type: SiteQuality
SIO_000300: 5.204e1

MQRankSum
type: SiteQuality
SIO_000300: -2.716e0

QD
type: SiteQuality
SIO_000300: 4.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

FS
type: SiteQuality
SIO_000300: 6.147e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.539e0

Latino
type: Population
allele count: 33
allele frequency: 2.874564459930313e-3
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 549
allele frequency: 8.372731432057343e-3
allele num: 65570
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 1.501154734411085e-2
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 671
allele frequency: 4.463810537519958e-2
allele num: 15032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 49
allele frequency: 7.52919483712354e-3
allele num: 6508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.142e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

DP
type: SiteQuality
SIO_000300: 1.2175429e7

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

FS
type: SiteQuality
SIO_000300: 4.3414e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: -3.404e0

QD
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.5e1

African
type: Population
allele count: 1143
allele frequency: 1.356193640246796e-1
allele num: 8428
num of homozygotes: 0

East Asian
type: Population
allele count: 1011
allele frequency: 1.405337781484571e-1
allele num: 7194
num of homozygotes: 0

Other
type: Population
allele count: 105
allele frequency: 1.396276595744681e-1
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5976
allele frequency: 1.024340075419952e-1
allele num: 58340
num of homozygotes: 0

South Asian
type: Population
allele count: 3447
allele frequency: 2.597197106690777e-1
allele num: 13272
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.058e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 2.42e0

VQSLOD
type: SiteQuality
SIO_000300: -1.248e0

MQ
type: SiteQuality
SIO_000300: 5.537e1

MQRankSum
type: SiteQuality
SIO_000300: -5.839e0

DP
type: SiteQuality
SIO_000300: 1.2348545e7

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 2.122e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.028453890983888e-4
allele num: 58340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7194
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.329787234042553e-3
allele num: 752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.122e0

QD
type: SiteQuality
SIO_000300: 2.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.2348545e7

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.058e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.839e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

VQSLOD
type: SiteQuality
SIO_000300: -1.248e0

MQ
type: SiteQuality
SIO_000300: 5.537e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.458412588621823e-4
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.632e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.719e0

MQ
type: SiteQuality
SIO_000300: 5.652e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.152e0

QD
type: SiteQuality
SIO_000300: 2.262e1

DP
type: SiteQuality
SIO_000300: 1.2344349e7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

QD
type: SiteQuality
SIO_000300: 8.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.2346877e7

MQ
type: SiteQuality
SIO_000300: 5.025e1

MQRankSum
type: SiteQuality
SIO_000300: -2.395e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.677e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.395e0

VQSLOD
type: SiteQuality
SIO_000300: -1.677e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.025e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.2346877e7

QD
type: SiteQuality
SIO_000300: 8.16e0

Other
type: Population
allele count: 3
allele frequency: 3.34075723830735e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 75
allele frequency: 6.480041472265423e-3
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.757e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.63e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.65e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.768e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.125e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

DP
type: SiteQuality
SIO_000300: 1.2350758e7

European (Finnish)
type: Population
allele count: 905
allele frequency: 1.555517359917497e-1
allele num: 5818
num of homozygotes: 0

South Asian
type: Population
allele count: 3088
allele frequency: 2.286729857819905e-1
allele num: 13504
num of homozygotes: 0

Other
type: Population
allele count: 90
allele frequency: 1.150895140664962e-1
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 450
allele frequency: 4.155124653739612e-2
allele num: 10830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5085
allele frequency: 8.363211736456037e-2
allele num: 60802
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.068e0

MQ
type: SiteQuality
SIO_000300: 5.575e1

VQSLOD
type: SiteQuality
SIO_000300: -3.277e0

MQRankSum
type: SiteQuality
SIO_000300: -5.681e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.2457943e7

FS
type: SiteQuality
SIO_000300: 8.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.22e-2

QD
type: SiteQuality
SIO_000300: 3.42e0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 8.223413703496596e-4
allele num: 60802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.405213270142181e-5
allele num: 13504
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.836317135549872e-3
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 968
allele frequency: 1.080598347845501e-1
allele num: 8958
num of homozygotes: 5

East Asian
type: Population
allele count: 1
allele frequency: 1.289989680082559e-4
allele num: 7752
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.22e-2

MQ
type: SiteQuality
SIO_000300: 5.575e1

DP
type: SiteQuality
SIO_000300: 1.2457943e7

BaseQRankSum
type: SiteQuality
SIO_000300: -3.068e0

FS
type: SiteQuality
SIO_000300: 8.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.277e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -5.681e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

QD
type: SiteQuality
SIO_000300: 3.42e0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.289365481398638e-4
allele num: 60802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.406990521327014e-3
allele num: 13504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.277e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -5.681e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.068e0

MQ
type: SiteQuality
SIO_000300: 5.575e1

DP
type: SiteQuality
SIO_000300: 1.2457943e7

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.22e-2

QD
type: SiteQuality
SIO_000300: 3.42e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.018122581958868e-4
allele num: 9822
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818843215714805e-4
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.626e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.2427875e7

VQSLOD
type: SiteQuality
SIO_000300: -4.04e0

FS
type: SiteQuality
SIO_000300: 1.9798e1

QD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.723e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

Other
type: Population
allele count: 2
allele frequency: 2.2271714922049e-3
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 4.946043165467626e-4
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.277137659187386e-4
allele num: 16490
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.316e1

FS
type: SiteQuality
SIO_000300: 1.1208e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

DP
type: SiteQuality
SIO_000300: 1.2428472e7

QD
type: SiteQuality
SIO_000300: 4.73e0

MQRankSum
type: SiteQuality
SIO_000300: -2.704e0

Other
type: Population
allele count: 102
allele frequency: 1.367292225201072e-1
allele num: 746
num of homozygotes: 0

East Asian
type: Population
allele count: 990
allele frequency: 1.393973528583498e-1
allele num: 7102
num of homozygotes: 0

Latino
type: Population
allele count: 565
allele frequency: 5.895242070116861e-2
allele num: 9584
num of homozygotes: 0

African
type: Population
allele count: 1124
allele frequency: 1.334599857516029e-1
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 3422
allele frequency: 2.606642291285801e-1
allele num: 13128
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

MQRankSum
type: SiteQuality
SIO_000300: -6.111e0

VQSLOD
type: SiteQuality
SIO_000300: -2.342e0

DP
type: SiteQuality
SIO_000300: 1.2556667e7

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.021e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQ
type: SiteQuality
SIO_000300: 5.581e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.617306520414382e-5
allele num: 13128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.342e0

MQRankSum
type: SiteQuality
SIO_000300: -6.111e0

QD
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.021e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

MQ
type: SiteQuality
SIO_000300: 5.581e1

DP
type: SiteQuality
SIO_000300: 1.2556667e7

European (Non-Finnish)
type: Population
allele count: 5793
allele frequency: 9.995513838084064e-2
allele num: 57956
num of homozygotes: 0

East Asian
type: Population
allele count: 978
allele frequency: 1.362496517135692e-1
allele num: 7178
num of homozygotes: 0

Latino
type: Population
allele count: 550
allele frequency: 5.58489033306255e-2
allele num: 9848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1008
allele frequency: 1.862527716186253e-1
allele num: 5412
num of homozygotes: 0

Other
type: Population
allele count: 103
allele frequency: 1.373333333333333e-1
allele num: 750
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.536e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

DP
type: SiteQuality
SIO_000300: 1.2579174e7

MQ
type: SiteQuality
SIO_000300: 5.592e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.143e0

QD
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

Other
type: Population
allele count: 11
allele frequency: 1.443569553805774e-2
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 165
allele frequency: 3.062360801781737e-2
allele num: 5388
num of homozygotes: 0

South Asian
type: Population
allele count: 733
allele frequency: 5.902721855371235e-2
allele num: 12418
num of homozygotes: 0

East Asian
type: Population
allele count: 174
allele frequency: 2.37964989059081e-2
allele num: 7312
num of homozygotes: 0

African
type: Population
allele count: 112
allele frequency: 1.297197127634932e-2
allele num: 8634
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

QD
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -9.348e-1

DP
type: SiteQuality
SIO_000300: 1.2565288e7

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

MQ
type: SiteQuality
SIO_000300: 5.608e1

MQRankSum
type: SiteQuality
SIO_000300: -5.27e0

FS
type: SiteQuality
SIO_000300: 1.0354e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.53e-1

East Asian
type: Population
allele count: 20
allele frequency: 2.755580049600441e-3
allele num: 7258
num of homozygotes: 0

African
type: Population
allele count: 67
allele frequency: 7.672927164452588e-3
allele num: 8732
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 7.853403141361256e-3
allele num: 764
num of homozygotes: 0

South Asian
type: Population
allele count: 432
allele frequency: 3.796133567662566e-2
allele num: 11380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 305
allele frequency: 5.061904603843728e-3
allele num: 60254
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.2018598e7

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -3.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.848e0

FS
type: SiteQuality
SIO_000300: 3.4484e1

MQ
type: SiteQuality
SIO_000300: 5.581e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

African
type: Population
allele count: 924
allele frequency: 1.398305084745763e-1
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 81
allele frequency: 1.431095406360424e-1
allele num: 566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 391
allele frequency: 9.683011391778108e-2
allele num: 4038
num of homozygotes: 0

Latino
type: Population
allele count: 1149
allele frequency: 1.582644628099174e-1
allele num: 7260
num of homozygotes: 0

East Asian
type: Population
allele count: 524
allele frequency: 1.005372217958557e-1
allele num: 5212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.83e-1

QD
type: SiteQuality
SIO_000300: 2.69e0

VQSLOD
type: SiteQuality
SIO_000300: -3.575e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

FS
type: SiteQuality
SIO_000300: 2.7503e1

MQRankSum
type: SiteQuality
SIO_000300: -4.887e0

MQ
type: SiteQuality
SIO_000300: 5.602e1

DP
type: SiteQuality
SIO_000300: 1.2257842e7

Other
type: Population
allele count: 1
allele frequency: 1.76678445229682e-3
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.735647530040053e-3
allele num: 7490
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.755947812739831e-4
allele num: 5212
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.026634382566586e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.754820936639118e-4
allele num: 7260
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.602e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.575e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-1

QD
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 2.7503e1

DP
type: SiteQuality
SIO_000300: 1.2257842e7

MQRankSum
type: SiteQuality
SIO_000300: -4.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.215657670799903e-4
allele num: 8226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

DP
type: SiteQuality
SIO_000300: 1.2154197e7

FS
type: SiteQuality
SIO_000300: 2.2636e1

MQRankSum
type: SiteQuality
SIO_000300: -3.882e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.601e1

African
type: Population
allele count: 4
allele frequency: 4.862630683199611e-4
allele num: 8226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.016942315449778e-4
allele num: 4958
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.483679525222552e-3
allele num: 10110
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.92029128124385e-4
allele num: 10162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 5.458130854285513e-4
allele num: 56796
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.882e0

FS
type: SiteQuality
SIO_000300: 2.2636e1

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

DP
type: SiteQuality
SIO_000300: 1.2154197e7

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.29e-2

MQ
type: SiteQuality
SIO_000300: 5.601e1

QD
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

African
type: Population
allele count: 68
allele frequency: 8.266472161439338e-3
allele num: 8226
num of homozygotes: 0

South Asian
type: Population
allele count: 435
allele frequency: 4.302670623145401e-2
allele num: 10110
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.771304861247786e-3
allele num: 10162
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 3.126861226920786e-3
allele num: 6716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 306
allele frequency: 5.387703359391507e-3
allele num: 56796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.29e-2

QD
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -3.882e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.2154197e7

FS
type: SiteQuality
SIO_000300: 2.2636e1

MQ
type: SiteQuality
SIO_000300: 5.601e1

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.972111553784861e-4
allele num: 10040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.770480704129993e-5
allele num: 59080
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.363e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.416e0

MQ
type: SiteQuality
SIO_000300: 5.725e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.357e0

MQRankSum
type: SiteQuality
SIO_000300: -2.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

QD
type: SiteQuality
SIO_000300: 4.5e-1

FS
type: SiteQuality
SIO_000300: 2.0789e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

DP
type: SiteQuality
SIO_000300: 1.2480855e7

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 1.023e1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.641e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

DP
type: SiteQuality
SIO_000300: 1.2477192e7

MQ
type: SiteQuality
SIO_000300: 5.474e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.667e0

QD
type: SiteQuality
SIO_000300: 1.808e1

European (Finnish)
type: Population
allele count: 884
allele frequency: 1.700654097729896e-1
allele num: 5198
num of homozygotes: 0

East Asian
type: Population
allele count: 1257
allele frequency: 1.845273047563124e-1
allele num: 6812
num of homozygotes: 0

African
type: Population
allele count: 1483
allele frequency: 1.858861870142893e-1
allele num: 7978
num of homozygotes: 0

Latino
type: Population
allele count: 2481
allele frequency: 2.564076064489458e-1
allele num: 9676
num of homozygotes: 0

South Asian
type: Population
allele count: 2020
allele frequency: 1.855935317897832e-1
allele num: 10884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.2615504e7

FS
type: SiteQuality
SIO_000300: 9.91e-1

QD
type: SiteQuality
SIO_000300: 4.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.62e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

MQRankSum
type: SiteQuality
SIO_000300: -6.566e0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

DP
type: SiteQuality
SIO_000300: 1.2513205e7

FS
type: SiteQuality
SIO_000300: 2.7877e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 5.721e1

MQRankSum
type: SiteQuality
SIO_000300: -2.633e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: -5.797e0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.892e0

FS
type: SiteQuality
SIO_000300: 1.6903e1

VQSLOD
type: SiteQuality
SIO_000300: -5.411e0

MQ
type: SiteQuality
SIO_000300: 5.722e1

QD
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 1.2513469e7

ClippingRankSum
type: SiteQuality
SIO_000300: -1.614e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.771e0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.035416242621616e-4
allele num: 9826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.276255154014067e-4
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

MQ
type: SiteQuality
SIO_000300: 5.471e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.555e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

FS
type: SiteQuality
SIO_000300: 1.1785e1

VQSLOD
type: SiteQuality
SIO_000300: -2.678e0

DP
type: SiteQuality
SIO_000300: 1.2513654e7

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512310205069264e-5
allele num: 66124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.6e-1

MQ
type: SiteQuality
SIO_000300: 5.637e1

FS
type: SiteQuality
SIO_000300: 2.4697e1

VQSLOD
type: SiteQuality
SIO_000300: -4.701e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.54e-2

DP
type: SiteQuality
SIO_000300: 1.2552662e7

MQRankSum
type: SiteQuality
SIO_000300: -5.015e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.586e0

African
type: Population
allele count: 765
allele frequency: 7.893107717705324e-2
allele num: 9692
num of homozygotes: 0

Other
type: Population
allele count: 67
allele frequency: 7.596371882086168e-2
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5034
allele frequency: 7.612969572318674e-2
allele num: 66124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 294
allele frequency: 4.478976234003657e-2
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 954
allele frequency: 8.324607329842931e-2
allele num: 11460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

MQ
type: SiteQuality
SIO_000300: 5.637e1

QD
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.54e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.586e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.015e0

FS
type: SiteQuality
SIO_000300: 2.4697e1

DP
type: SiteQuality
SIO_000300: 1.2552662e7

VQSLOD
type: SiteQuality
SIO_000300: -4.701e0

Latino
type: Population
allele count: 928
allele frequency: 8.111888111888112e-2
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 415
allele frequency: 4.843604108309991e-2
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 288
allele frequency: 4.390243902439024e-2
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 744
allele frequency: 7.65904879555281e-2
allele num: 9714
num of homozygotes: 0

Other
type: Population
allele count: 63
allele frequency: 7.142857142857142e-2
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.47e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.745e0

MQRankSum
type: SiteQuality
SIO_000300: -5.004e0

DP
type: SiteQuality
SIO_000300: 1.25636e7

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

FS
type: SiteQuality
SIO_000300: 2.4754e1

QD
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQ
type: SiteQuality
SIO_000300: 5.637e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

South Asian
type: Population
allele count: 717
allele frequency: 4.366626065773447e-2
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 894
allele frequency: 7.798325191905094e-2
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 724
allele frequency: 7.440904419321685e-2
allele num: 9730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 281
allele frequency: 4.282231027125876e-2
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 398
allele frequency: 4.640858208955224e-2
allele num: 8576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.5e-1

DP
type: SiteQuality
SIO_000300: 1.256289e7

MQRankSum
type: SiteQuality
SIO_000300: -4.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQ
type: SiteQuality
SIO_000300: 5.641e1

FS
type: SiteQuality
SIO_000300: 2.1678e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.353e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.477e0

QD
type: SiteQuality
SIO_000300: 2.28e0

South Asian
type: Population
allele count: 631
allele frequency: 3.841938626400389e-2
allele num: 16424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3896
allele frequency: 5.878625101849896e-2
allele num: 66274
num of homozygotes: 0

African
type: Population
allele count: 659
allele frequency: 6.775652889163068e-2
allele num: 9726
num of homozygotes: 0

Other
type: Population
allele count: 54
allele frequency: 6.094808126410835e-2
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 654
allele frequency: 5.693888211736026e-2
allele num: 11486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.83e0

DP
type: SiteQuality
SIO_000300: 1.2587706e7

MQ
type: SiteQuality
SIO_000300: 5.639e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 2.1697e1

VQSLOD
type: SiteQuality
SIO_000300: -4.819e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.759999999999999e-2

QD
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.8e0

VQSLOD
type: SiteQuality
SIO_000300: -1.513e0

DP
type: SiteQuality
SIO_000300: 1.2539216e7

MQRankSum
type: SiteQuality
SIO_000300: 2.39e0

FS
type: SiteQuality
SIO_000300: 3.339e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.606e1

African
type: Population
allele count: 29
allele frequency: 2.982311805841218e-3
allele num: 9724
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734003814808393e-4
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.12310520447217e-4
allele num: 66366
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 2.093023255813954e-3
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.2546302e7

MQRankSum
type: SiteQuality
SIO_000300: -6.821e0

QD
type: SiteQuality
SIO_000300: 2.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -4.338e1

FS
type: SiteQuality
SIO_000300: 9.1556e1

MQ
type: SiteQuality
SIO_000300: 5.15e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.3438e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-1

QD
type: SiteQuality
SIO_000300: 3.199e1

VQSLOD
type: SiteQuality
SIO_000300: -6.153e0

MQ
type: SiteQuality
SIO_000300: 5.529e1

DP
type: SiteQuality
SIO_000300: 1.2540668e7

ClippingRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.867e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.126e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.848e0

FS
type: SiteQuality
SIO_000300: 1.772e0

MQ
type: SiteQuality
SIO_000300: 5.711e1

MQRankSum
type: SiteQuality
SIO_000300: 4.39e0

DP
type: SiteQuality
SIO_000300: 1.2540735e7

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.092e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.742e0

MQRankSum
type: SiteQuality
SIO_000300: -3.814e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.846e1

FS
type: SiteQuality
SIO_000300: 1.2283e1

QD
type: SiteQuality
SIO_000300: 2.625e1

DP
type: SiteQuality
SIO_000300: 1.2540714e7

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

European (Finnish)
type: Population
allele count: 470
allele frequency: 7.877975192758968e-2
allele num: 5966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4862
allele frequency: 7.859937275695948e-2
allele num: 61858
num of homozygotes: 0

East Asian
type: Population
allele count: 890
allele frequency: 1.169206516027325e-1
allele num: 7612
num of homozygotes: 0

African
type: Population
allele count: 711
allele frequency: 7.713169885007594e-2
allele num: 9218
num of homozygotes: 0

South Asian
type: Population
allele count: 2610
allele frequency: 1.710802307288936e-1
allele num: 15256
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.612e0

MQRankSum
type: SiteQuality
SIO_000300: -5.446e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.44e-2

QD
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 2.8986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

DP
type: SiteQuality
SIO_000300: 1.2797983e7

MQ
type: SiteQuality
SIO_000300: 5.683e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.44e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.446e0

VQSLOD
type: SiteQuality
SIO_000300: -1.612e0

MQ
type: SiteQuality
SIO_000300: 5.683e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.59e-1

FS
type: SiteQuality
SIO_000300: 2.8986e1

QD
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 1.2797983e7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15256
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.44e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.446e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

DP
type: SiteQuality
SIO_000300: 1.2797983e7

FS
type: SiteQuality
SIO_000300: 2.8986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.59e-1

MQ
type: SiteQuality
SIO_000300: 5.683e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.612e0

QD
type: SiteQuality
SIO_000300: 2.87e0

Latino
type: Population
allele count: 822
allele frequency: 8.58575308126175e-2
allele num: 9574
num of homozygotes: 0

East Asian
type: Population
allele count: 892
allele frequency: 1.169069462647444e-1
allele num: 7630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4905
allele frequency: 7.932272462643121e-2
allele num: 61836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 478
allele frequency: 7.985299031072503e-2
allele num: 5986
num of homozygotes: 0

Other
type: Population
allele count: 75
allele frequency: 8.844339622641509e-2
allele num: 848
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.313e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.08e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.641e0

QD
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 5.68e1

DP
type: SiteQuality
SIO_000300: 1.2825009e7

MQRankSum
type: SiteQuality
SIO_000300: -5.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

FS
type: SiteQuality
SIO_000300: 2.8781e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.617180930202471e-5
allele num: 61836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.08e-2

FS
type: SiteQuality
SIO_000300: 2.8781e1

DP
type: SiteQuality
SIO_000300: 1.2825009e7

VQSLOD
type: SiteQuality
SIO_000300: -6.641e0

QD
type: SiteQuality
SIO_000300: 2.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.313e0

MQ
type: SiteQuality
SIO_000300: 5.68e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

MQ
type: SiteQuality
SIO_000300: 5.64e1

DP
type: SiteQuality
SIO_000300: 1.2792614e7

BaseQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-1

FS
type: SiteQuality
SIO_000300: 1.84e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: -4.214e0

European (Non-Finnish)
type: Population
allele count: 1412
allele frequency: 2.120693280466192e-2
allele num: 66582
num of homozygotes: 0

African
type: Population
allele count: 316
allele frequency: 3.228442991418063e-2
allele num: 9788
num of homozygotes: 0

Latino
type: Population
allele count: 183
allele frequency: 1.584415584415584e-2
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 146
allele frequency: 1.695702671312427e-2
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 273
allele frequency: 1.658566221142163e-2
allele num: 16460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.214e0

DP
type: SiteQuality
SIO_000300: 1.2792614e7

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

FS
type: SiteQuality
SIO_000300: 1.84e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: -2.576e0

MQ
type: SiteQuality
SIO_000300: 5.64e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.032140691328078e-4
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818843215714805e-4
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.038735983690112e-4
allele num: 9810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.305487108600276e-4
allele num: 66556
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.146e0

FS
type: SiteQuality
SIO_000300: 9.503e0

QD
type: SiteQuality
SIO_000300: 4.57e0

VQSLOD
type: SiteQuality
SIO_000300: -3.464e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 5.716e1

DP
type: SiteQuality
SIO_000300: 1.2789366e7

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.533e0

African
type: Population
allele count: 2
allele frequency: 2.06953642384106e-4
allele num: 9664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.681433304699963e-4
allele num: 16298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.173068205856577e-4
allele num: 66182
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.740341106856944e-4
allele num: 11492
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.887e0

DP
type: SiteQuality
SIO_000300: 1.2795961e7

FS
type: SiteQuality
SIO_000300: 6.2243e1

VQSLOD
type: SiteQuality
SIO_000300: -1.978e1

MQ
type: SiteQuality
SIO_000300: 5.604e1

QD
type: SiteQuality
SIO_000300: 3.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.684053065788281e-4
allele num: 66182
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.257336343115124e-3
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.690397350993377e-3
allele num: 9664
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 2.098391233387736e-3
allele num: 8578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.64e0

FS
type: SiteQuality
SIO_000300: 6.2243e1

DP
type: SiteQuality
SIO_000300: 1.2795961e7

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.887e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.978e1

European (Finnish)
type: Population
allele count: 63
allele frequency: 9.551243177683445e-3
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 157
allele frequency: 1.358836766487796e-2
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 23
allele frequency: 2.572706935123042e-2
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 246
allele frequency: 2.510716472749541e-2
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 253
allele frequency: 1.536686103012634e-2
allele num: 16464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.2793198e7

MQRankSum
type: SiteQuality
SIO_000300: -4.003e0

QD
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

FS
type: SiteQuality
SIO_000300: 1.8533e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.64e1

VQSLOD
type: SiteQuality
SIO_000300: -4.847e0

European (Finnish)
type: Population
allele count: 62
allele frequency: 9.416767922235723e-3
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 124
allele frequency: 1.440520446096654e-2
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1111
allele frequency: 1.668819659326464e-2
allele num: 66574
num of homozygotes: 0

African
type: Population
allele count: 236
allele frequency: 2.413581509511148e-2
allele num: 9778
num of homozygotes: 0

South Asian
type: Population
allele count: 247
allele frequency: 1.500789889415482e-2
allele num: 16458
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.927e0

DP
type: SiteQuality
SIO_000300: 1.279177e7

ClippingRankSum
type: SiteQuality
SIO_000300: -7.74e-1

QD
type: SiteQuality
SIO_000300: 1.96e0

FS
type: SiteQuality
SIO_000300: 1.8672e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.68e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
type: SiteQuality
SIO_000300: -4.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

MQ
type: SiteQuality
SIO_000300: 5.644e1

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.502087902184036e-4
allele num: 66574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022704029453876e-4
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.644e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: -3.927e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.74e-1

FS
type: SiteQuality
SIO_000300: 1.8672e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.68e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.85e0

QD
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 1.279177e7

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.25110304048984e-4
allele num: 66634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.578053955744165e-4
allele num: 6598
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

FS
type: SiteQuality
SIO_000300: 1.9079e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

QD
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: -2.976e0

MQRankSum
type: SiteQuality
SIO_000300: -3.751e0

MQ
type: SiteQuality
SIO_000300: 5.633e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

DP
type: SiteQuality
SIO_000300: 1.279055e7

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

European (Non-Finnish)
type: Population
allele count: 892
allele frequency: 1.338655941411292e-2
allele num: 66634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 50
allele frequency: 7.578053955744165e-3
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 183
allele frequency: 1.867728107777097e-2
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 215
allele frequency: 1.305562302647559e-2
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 115
allele frequency: 1.334416337897424e-2
allele num: 8618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.9079e1

QD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.751e0

VQSLOD
type: SiteQuality
SIO_000300: -2.976e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 1.279055e7

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

MQ
type: SiteQuality
SIO_000300: 5.633e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21447656060238e-4
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.976e0

MQRankSum
type: SiteQuality
SIO_000300: -3.751e0

MQ
type: SiteQuality
SIO_000300: 5.633e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 1.279055e7

FS
type: SiteQuality
SIO_000300: 1.9079e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

QD
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

European (Non-Finnish)
type: Population
allele count: 843
allele frequency: 1.266488386767224e-2
allele num: 66562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 47
allele frequency: 7.129854368932039e-3
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 17
allele frequency: 1.897321428571428e-2
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 134
allele frequency: 1.161379788524874e-2
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 211
allele frequency: 1.282518842693897e-2
allele num: 16452
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.583e0

VQSLOD
type: SiteQuality
SIO_000300: -4.252e0

FS
type: SiteQuality
SIO_000300: 1.6191e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

MQ
type: SiteQuality
SIO_000300: 5.637e1

DP
type: SiteQuality
SIO_000300: 1.2774801e7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017293997965412e-4
allele num: 9830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

DP
type: SiteQuality
SIO_000300: 1.2769639e7

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQ
type: SiteQuality
SIO_000300: 5.649e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.509e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 1.744e0

QD
type: SiteQuality
SIO_000300: 1.627e1

European (Finnish)
type: Population
allele count: 567
allele frequency: 1.066992849077907e-1
allele num: 5314
num of homozygotes: 0

East Asian
type: Population
allele count: 962
allele frequency: 1.600665557404326e-1
allele num: 6010
num of homozygotes: 0

Latino
type: Population
allele count: 940
allele frequency: 1.329185520361991e-1
allele num: 7072
num of homozygotes: 0

South Asian
type: Population
allele count: 3388
allele frequency: 2.374877330716389e-1
allele num: 14266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6091
allele frequency: 1.118805334117042e-1
allele num: 54442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.138e0

DP
type: SiteQuality
SIO_000300: 1.3144504e7

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-1

QD
type: SiteQuality
SIO_000300: 2.78e0

MQRankSum
type: SiteQuality
SIO_000300: -6.803e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.673e1

FS
type: SiteQuality
SIO_000300: 4.0153e1

VQSLOD
type: SiteQuality
SIO_000300: -3.576e0

East Asian
type: Population
allele count: 2336
allele frequency: 3.555555555555556e-1
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 212
allele frequency: 2.93628808864266e-1
allele num: 722
num of homozygotes: 0

South Asian
type: Population
allele count: 5168
allele frequency: 3.692483566733352e-1
allele num: 13996
num of homozygotes: 0

African
type: Population
allele count: 2292
allele frequency: 2.896865520728008e-1
allele num: 7912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1605
allele frequency: 2.915001816200509e-1
allele num: 5506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.339484e7

VQSLOD
type: SiteQuality
SIO_000300: 1.972e1

FS
type: SiteQuality
SIO_000300: 3.753e1

MQRankSum
type: SiteQuality
SIO_000300: -7.639e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

QD
type: SiteQuality
SIO_000300: 6.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.151e-1

MQ
type: SiteQuality
SIO_000300: 5.675e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.016880211511084e-4
allele num: 9834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.814e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -3.877e0

MQRankSum
type: SiteQuality
SIO_000300: 5.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

DP
type: SiteQuality
SIO_000300: 1.3347167e7

African
type: Population
allele count: 2288
allele frequency: 2.812192723697148e-1
allele num: 8136
num of homozygotes: 0

Latino
type: Population
allele count: 2811
allele frequency: 3.555527447508222e-1
allele num: 7906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15391
allele frequency: 2.897947655808699e-1
allele num: 53110
num of homozygotes: 0

East Asian
type: Population
allele count: 2335
allele frequency: 3.522933011466506e-1
allele num: 6628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1607
allele frequency: 2.862486640541503e-1
allele num: 5614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.135e-1

DP
type: SiteQuality
SIO_000300: 1.3430772e7

BaseQRankSum
type: SiteQuality
SIO_000300: -3.463e0

MQRankSum
type: SiteQuality
SIO_000300: -7.785e0

QD
type: SiteQuality
SIO_000300: 6.03e0

VQSLOD
type: SiteQuality
SIO_000300: -2.667e0

MQ
type: SiteQuality
SIO_000300: 5.673e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

FS
type: SiteQuality
SIO_000300: 4.5567e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1