15-85433763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433763
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433763
    reference: chr 15
allele count: 1
allele frequency: 1.073652566029633e-5
allele num: 93140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.41C>T
  hgvsp: ENSP00000443764.1:p.Thr14Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.275C>T
  hgvsp: ENSP00000378074.1:p.Thr92Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.275C>T
  hgvsp: ENSP00000440546.1:p.Thr92Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.275C>T
  hgvsp: ENSP00000286749.3:p.Thr92Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.275C>T
  hgvsp: ENSP00000443752.1:p.Thr92Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.275C>T
  hgvsp: ENSP00000341629.2:p.Thr92Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.275C>T
  hgvsp: ENSP00000444700.1:p.Thr92Ile
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22489
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr92Ile
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

15-85433768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433768
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433768
    reference: chr 15
allele count: 1
allele frequency: 1.087405667558339e-5
allele num: 91962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+3G>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
hgvs: c.277+3G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

15-85433779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433779
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433779
    reference: chr 15
allele count: 1
allele frequency: 1.202125357632294e-5
allele num: 83186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+14C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+14C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+14C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+14C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+14C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+14C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+14C>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/15-85433784-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433784
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433784
    reference: chr 15
allele count: 1
allele frequency: 1.233532343218039e-5
allele num: 81068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+19A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+19A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+19A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+19A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+19A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+19A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+19A>C
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22415
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

15-85433784-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433784
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433784
    reference: chr 15
allele count: 2
allele frequency: 2.467064686436078e-5
allele num: 81068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+19A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+19A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+19A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+19A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+19A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+19A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+19A>G
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-85433787-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433787
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433787
    reference: chr 15
allele count: 1
allele frequency: 1.262275630506677e-5
allele num: 79222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+22A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+22A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+22A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+22A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+22A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+22A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+22A>G
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3951
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-85433799-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433799
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433799
    reference: chr 15
allele count: 2
allele frequency: 2.833342777809259e-5
allele num: 70588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+34A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+34A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+34A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+34A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+34A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+34A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+34A>G
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21508
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2765
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5801
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

15-85433813-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433813
    reference: chr 15
allele count: 1
allele frequency: 1.757407472496573e-5
allele num: 56902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+48A>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+48A>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+48A>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+48A>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+48A>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+48A>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+48A>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5805
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8662
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5652
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

15-85433815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433815
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433815
    reference: chr 15
allele count: 1
allele frequency: 1.877934272300469e-5
allele num: 53250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+50C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+50C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+50C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+50C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+50C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+50C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+50C>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15099
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5783
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5804
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

15-85433816-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85433816
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85433816
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 53866
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.277+51T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.277+51T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.277+51T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.277+51T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.277+51T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.43+51T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.277+51T>C
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25238
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10303
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5735
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-85438120-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438120
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438120
    reference: chr 15
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-51C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-51C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-51C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-51C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-51C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-51C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-51C>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12715
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

15-85438127-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438127
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438127
    reference: chr 15
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-44G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-44G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-44G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-44G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-44G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-44G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-44G>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10145
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

15-85438132-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438132
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438132
    reference: chr 15
allele count: 4901
allele frequency: 4.054702495201536e-2
allele num: 120872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-39T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-39T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-39T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-39T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-39T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-39T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-39T>C
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 4.25e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 4.75e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 2.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 5.75e1
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 6.25e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 6.75e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 5.25e1
  variant carriers: 503
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 9.75e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 12628
  bin: 3.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 8.25e1
  variant carriers: 153
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19771
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 133
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS

15-85438139-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438139
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438139
    reference: chr 15
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-32G>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-85438140-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438140
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438141
    reference: chr 15
allele count: 1
allele frequency: 8.264872638312644e-6
allele num: 120994
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-30dupT
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-30dupT
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-30dupT
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-30dupT
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-30dupT
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-30dupT
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-30dupT
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21459
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-85438147-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438147
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438147
    reference: chr 15
allele count: 2
allele frequency: 1.652400938563733e-5
allele num: 121036
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-24C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-24C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-24C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-24C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-24C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-24C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-24C>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

15-85438149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438149
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438149
    reference: chr 15
allele count: 391
allele frequency: 3.230016852261838e-3
allele num: 121052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-22C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-22C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-22C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-22C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-22C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-22C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-22C>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10548
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 6.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 13057
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19993
  bin: 9.75e1
  variant carriers: 379
genotype quality: GenotypeQuality
  all individuals: 8008
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 11
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

15-85438163-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438163
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438163
    reference: chr 15
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-8T>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-8T>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-8T>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-8T>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-8T>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-8T>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-8T>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: c.278-8T>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-85438166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438166
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438166
    reference: chr 15
allele count: 6
allele frequency: 4.951066954928787e-5
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-5C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-5C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-5C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-5C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-5C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-5C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-5C>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
hgvs: c.278-5C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

15-85438167-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438167
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438167
    reference: chr 15
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278-4C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44-4C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278-4C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278-4C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278-4C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278-4C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278-4C>G
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.278-4C>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-85438171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438171
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438171
    reference: chr 15
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.278G>A
  hgvsp: ENSP00000440546.1:p.Gly93Glu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.278G>A
  hgvsp: ENSP00000341629.2:p.Gly93Glu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.44G>A
  hgvsp: ENSP00000443764.1:p.Gly15Glu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.278G>A
  hgvsp: ENSP00000444700.1:p.Gly93Glu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.278G>A
  hgvsp: ENSP00000443752.1:p.Gly93Glu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.278G>A
  hgvsp: ENSP00000378074.1:p.Gly93Glu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.278G>A
  hgvsp: ENSP00000286749.3:p.Gly93Glu
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10753
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19705
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly93Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-85438172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438172
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438172
    reference: chr 15
allele count: 4
allele frequency: 3.29918675046601e-5
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.279G>A
  hgvsp: ENST00000537216.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.279G>A
  hgvsp: ENST00000538177.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.45G>A
  hgvsp: ENST00000537703.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.279G>A
  hgvsp: ENST00000394573.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.279G>A
  hgvsp: ENST00000286749.3:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.279G>A
  hgvsp: ENST00000338602.2:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.279G>A
  hgvsp: ENST00000537624.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19705
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
hgvs: c.279G>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-85438181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438181
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438181
    reference: chr 15
allele count: 38
allele frequency: 3.132677119915583e-4
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.54C>T
  hgvsp: ENST00000537703.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.288C>T
  hgvsp: ENST00000537216.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.288C>T
  hgvsp: ENST00000394573.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.288C>T
  hgvsp: ENST00000338602.2:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.288C>T
  hgvsp: ENST00000538177.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.288C>T
  hgvsp: ENST00000286749.3:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.288C>T
  hgvsp: ENST00000537624.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13175
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8062
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala96Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

15-85438185-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438185
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438185
    reference: chr 15
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.292C>G
  hgvsp: ENSP00000286749.3:p.Leu98Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.58C>G
  hgvsp: ENSP00000443764.1:p.Leu20Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.292C>G
  hgvsp: ENSP00000341629.2:p.Leu98Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.292C>G
  hgvsp: ENSP00000444700.1:p.Leu98Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.292C>G
  hgvsp: ENSP00000440546.1:p.Leu98Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.292C>G
  hgvsp: ENSP00000378074.1:p.Leu98Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.292C>G
  hgvsp: ENSP00000443752.1:p.Leu98Val
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19681
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu98Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-85438204-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438204
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438204
    reference: chr 15
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.311T>A
  hgvsp: ENSP00000440546.1:p.Leu104Gln
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.77T>A
  hgvsp: ENSP00000443764.1:p.Leu26Gln
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.311T>A
  hgvsp: ENSP00000443752.1:p.Leu104Gln
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.311T>A
  hgvsp: ENSP00000286749.3:p.Leu104Gln
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.311T>A
  hgvsp: ENSP00000378074.1:p.Leu104Gln
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.311T>A
  hgvsp: ENSP00000341629.2:p.Leu104Gln
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.311T>A
  hgvsp: ENSP00000444700.1:p.Leu104Gln
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22415
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu104Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

15-85438217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438217
    reference: chr 15
allele count: 4
allele frequency: 3.295055768818887e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.324G>A
  hgvsp: ENST00000537624.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.324G>A
  hgvsp: ENST00000538177.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.324G>A
  hgvsp: ENST00000394573.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.90G>A
  hgvsp: ENST00000537703.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.324G>A
  hgvsp: ENST00000338602.2:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.324G>A
  hgvsp: ENST00000537216.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.324G>A
  hgvsp: ENST00000286749.3:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg108Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

15-85438223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438223
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438223
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.330G>A
  hgvsp: ENST00000537216.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.330G>A
  hgvsp: ENST00000338602.2:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.330G>A
  hgvsp: ENST00000286749.3:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.330G>A
  hgvsp: ENST00000538177.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.96G>A
  hgvsp: ENST00000537703.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.330G>A
  hgvsp: ENST00000537624.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.330G>A
  hgvsp: ENST00000394573.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13233
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19679
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu110Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-85438229-GTTTGTCCTCACCTGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438229
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438214
    reference: chr 15
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsp: ENSP00000378074.1:p.Phe113_Cys117del
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsp: ENSP00000286749.3:p.Phe113_Cys117del
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsp: ENSP00000443752.1:p.Phe113_Cys117del
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsp: ENSP00000444700.1:p.Phe113_Cys117del
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsp: ENSP00000443764.1:p.Phe35_Cys39del
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsp: ENSP00000341629.2:p.Phe113_Cys117del
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsp: ENSP00000440546.1:p.Phe113_Cys117del
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19680
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8094
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe113_Cys117del
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: GTTTGTCCTCACCTGT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

15-85438233-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438233
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438233
    reference: chr 15
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.106G>T
  hgvsp: ENSP00000443764.1:p.Val36Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.340G>T
  hgvsp: ENSP00000378074.1:p.Val114Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.340G>T
  hgvsp: ENSP00000286749.3:p.Val114Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.340G>T
  hgvsp: ENSP00000444700.1:p.Val114Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.340G>T
  hgvsp: ENSP00000440546.1:p.Val114Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.340G>T
  hgvsp: ENSP00000443752.1:p.Val114Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.340G>T
  hgvsp: ENSP00000341629.2:p.Val114Phe
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19679
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val114Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-85438241-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438241
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438241
    reference: chr 15
allele count: 18
allele frequency: 1.482799525504152e-4
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.348C>A
  hgvsp: ENST00000537216.1:c.348C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.348C>A
  hgvsp: ENST00000538177.1:c.348C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.114C>A
  hgvsp: ENST00000537703.1:c.114C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.348C>A
  hgvsp: ENST00000537624.1:c.348C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.348C>A
  hgvsp: ENST00000394573.1:c.348C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.348C>A
  hgvsp: ENST00000338602.2:c.348C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.348C>A
  hgvsp: ENST00000286749.3:c.348C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr116Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-85438589-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438589
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438589
    reference: chr 15
allele count: 5
allele frequency: 4.122487343963854e-5
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+235C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.462-20C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+235C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+235C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+235C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+235C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+235C>G
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6710
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

15-85438260-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438260
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438260
    reference: chr 15
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.367C>G
  hgvsp: ENSP00000378074.1:p.Leu123Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.367C>G
  hgvsp: ENSP00000443752.1:p.Leu123Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.367C>G
  hgvsp: ENSP00000341629.2:p.Leu123Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.367C>G
  hgvsp: ENSP00000444700.1:p.Leu123Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.133C>G
  hgvsp: ENSP00000443764.1:p.Leu45Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.367C>G
  hgvsp: ENSP00000286749.3:p.Leu123Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.367C>G
  hgvsp: ENSP00000440546.1:p.Leu123Val
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu123Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-85438269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438269
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438269
    reference: chr 15
allele count: 15
allele frequency: 1.236216189487218e-4
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.376C>T
  hgvsp: ENSP00000440546.1:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.376C>T
  hgvsp: ENSP00000341629.2:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.376C>T
  hgvsp: ENSP00000443752.1:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.376C>T
  hgvsp: ENSP00000378074.1:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.376C>T
  hgvsp: ENSP00000286749.3:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.376C>T
  hgvsp: ENSP00000444700.1:p.Arg126Cys
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.142C>T
  hgvsp: ENSP00000443764.1:p.Arg48Cys
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19683
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg126Cys
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-85438270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438270
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438270
    reference: chr 15
allele count: 3
allele frequency: 2.47239162683369e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.377G>A
  hgvsp: ENSP00000440546.1:p.Arg126His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.377G>A
  hgvsp: ENSP00000443752.1:p.Arg126His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.377G>A
  hgvsp: ENSP00000341629.2:p.Arg126His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.377G>A
  hgvsp: ENSP00000378074.1:p.Arg126His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.377G>A
  hgvsp: ENSP00000444700.1:p.Arg126His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.377G>A
  hgvsp: ENSP00000286749.3:p.Arg126His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.143G>A
  hgvsp: ENSP00000443764.1:p.Arg48His
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg126His
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

15-85438280-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438280
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438280
    reference: chr 15
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.153A>G
  hgvsp: ENST00000537703.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.387A>G
  hgvsp: ENST00000338602.2:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.387A>G
  hgvsp: ENST00000394573.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.387A>G
  hgvsp: ENST00000286749.3:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.387A>G
  hgvsp: ENST00000538177.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.387A>G
  hgvsp: ENST00000537624.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.387A>G
  hgvsp: ENST00000537216.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19667
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys129Lys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-85438281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438281
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438281
    reference: chr 15
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.154C>T
  hgvsp: ENSP00000443764.1:p.Arg52Trp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.388C>T
  hgvsp: ENSP00000440546.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.388C>T
  hgvsp: ENSP00000444700.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.388C>T
  hgvsp: ENSP00000443752.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.388C>T
  hgvsp: ENSP00000341629.2:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.388C>T
  hgvsp: ENSP00000286749.3:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.388C>T
  hgvsp: ENSP00000378074.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg130Trp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

15-85438283-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438283
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438282
    reference: chr 15
allele count: 4
allele frequency: 3.298153034300791e-5
allele num: 121280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.391delC
  hgvsp: ENSP00000443752.1:p.Leu131PhefsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.391delC
  hgvsp: ENSP00000440546.1:p.Leu131PhefsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.391delC
  hgvsp: ENSP00000444700.1:p.Leu131PhefsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.391delC
  hgvsp: ENSP00000378074.1:p.Leu131PhefsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.391delC
  hgvsp: ENSP00000286749.3:p.Leu131PhefsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.391delC
  hgvsp: ENSP00000341629.2:p.Leu131PhefsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.157delC
  hgvsp: ENSP00000443764.1:p.Leu53PhefsTer6
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19666
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu131PhefsTer6
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: GC
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-85438284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438284
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438284
    reference: chr 15
allele count: 4
allele frequency: 3.298588204248581e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.391C>T
  hgvsp: ENSP00000286749.3:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.391C>T
  hgvsp: ENSP00000341629.2:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.391C>T
  hgvsp: ENSP00000443752.1:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.391C>T
  hgvsp: ENSP00000440546.1:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.391C>T
  hgvsp: ENSP00000378074.1:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.391C>T
  hgvsp: ENSP00000444700.1:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.157C>T
  hgvsp: ENSP00000443764.1:p.Leu53Phe
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu131Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

15-85438291-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438291
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438291
    reference: chr 15
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.398G>T
  hgvsp: ENSP00000443752.1:p.Gly133Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.398G>T
  hgvsp: ENSP00000378074.1:p.Gly133Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.164G>T
  hgvsp: ENSP00000443764.1:p.Gly55Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.398G>T
  hgvsp: ENSP00000440546.1:p.Gly133Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.398G>T
  hgvsp: ENSP00000341629.2:p.Gly133Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.398G>T
  hgvsp: ENSP00000444700.1:p.Gly133Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.398G>T
  hgvsp: ENSP00000286749.3:p.Gly133Val
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly133Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

15-85438292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438292
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438292
    reference: chr 15
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.399G>A
  hgvsp: ENST00000538177.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.165G>A
  hgvsp: ENST00000537703.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.399G>A
  hgvsp: ENST00000537216.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.399G>A
  hgvsp: ENST00000338602.2:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.399G>A
  hgvsp: ENST00000394573.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.399G>A
  hgvsp: ENST00000537624.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.399G>A
  hgvsp: ENST00000286749.3:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19663
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly133Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

15-85438304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438304
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438304
    reference: chr 15
allele count: 3
allele frequency: 2.693965517241379e-5
allele num: 111360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.411G>A
  hgvsp: ENST00000394573.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.411G>A
  hgvsp: ENST00000338602.2:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.411G>A
  hgvsp: ENST00000538177.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.177G>A
  hgvsp: ENST00000537703.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.411G>A
  hgvsp: ENST00000537216.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.411G>A
  hgvsp: ENST00000286749.3:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.411G>A
  hgvsp: ENST00000537624.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6626
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg137Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-85438307-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438307
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438307
    reference: chr 15
allele count: 1
allele frequency: 8.981336782166658e-6
allele num: 111342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.414G>T
  hgvsp: ENSP00000444700.1:p.Arg138Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.414G>T
  hgvsp: ENSP00000286749.3:p.Arg138Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.414G>T
  hgvsp: ENSP00000341629.2:p.Arg138Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.414G>T
  hgvsp: ENSP00000440546.1:p.Arg138Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.414G>T
  hgvsp: ENSP00000443752.1:p.Arg138Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.414G>T
  hgvsp: ENSP00000378074.1:p.Arg138Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.180G>T
  hgvsp: ENSP00000443764.1:p.Arg60Ser
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7841
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg138Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-85438308-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438308
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438308
    reference: chr 15
allele count: 1
allele frequency: 8.984725965858042e-6
allele num: 111300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.181T>C
  hgvsp: ENSP00000443764.1:p.Phe61Leu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.415T>C
  hgvsp: ENSP00000440546.1:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.415T>C
  hgvsp: ENSP00000444700.1:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.415T>C
  hgvsp: ENSP00000443752.1:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.415T>C
  hgvsp: ENSP00000378074.1:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.415T>C
  hgvsp: ENSP00000341629.2:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.415T>C
  hgvsp: ENSP00000286749.3:p.Phe139Leu
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe139Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-85438311-C-CTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438311
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438314
    reference: chr 15
allele count: 33907
allele frequency: 2.801814606091656e-1
allele num: 121018
alternate allele: CTTG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.419_420insTGT
  hgvsp: ENSP00000286749.3:p.Leu140_Lys141insVal
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.185_186insTGT
  hgvsp: ENSP00000443764.1:p.Leu62_Lys63insVal
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.419_420insTGT
  hgvsp: ENSP00000378074.1:p.Leu140_Lys141insVal
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.419_420insTGT
  hgvsp: ENSP00000341629.2:p.Leu140_Lys141insVal
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.419_420insTGT
  hgvsp: ENSP00000444700.1:p.Leu140_Lys141insVal
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.419_420insTGT
  hgvsp: ENSP00000443752.1:p.Leu140_Lys141insVal
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.419_420insTGT
  hgvsp: ENSP00000440546.1:p.Leu140_Lys141insVal
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 664
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 1751
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 448
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 9.25e1
  variant carriers: 1864
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.25e1
  variant carriers: 816
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 2.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 7.75e1
  variant carriers: 1396
genotype depth: GenotypeDepth
  all individuals: 9280
  bin: 2.75e1
  variant carriers: 354
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 3.75e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 11153
  bin: 3.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.25e1
  variant carriers: 546
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 7.25e1
  variant carriers: 1199
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 8.25e1
  variant carriers: 1624
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 15540
  bin: 9.75e1
  variant carriers: 15492
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 955
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 9.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 30787
  bin: 9.75e1
  variant carriers: 28620
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 29
hgvs: p.Leu140_Lys141insVal
num of homozygotes: 4909
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

15-85438311-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438311
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438311
    reference: chr 15
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.418C>G
  hgvsp: ENSP00000440546.1:p.Leu140Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.418C>G
  hgvsp: ENSP00000443752.1:p.Leu140Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.184C>G
  hgvsp: ENSP00000443764.1:p.Leu62Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.418C>G
  hgvsp: ENSP00000341629.2:p.Leu140Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.418C>G
  hgvsp: ENSP00000286749.3:p.Leu140Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.418C>G
  hgvsp: ENSP00000378074.1:p.Leu140Val
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.418C>G
  hgvsp: ENSP00000444700.1:p.Leu140Val
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15540
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30787
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu140Val
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-85438313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438313
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438313
    reference: chr 15
allele count: 1
allele frequency: 8.719764217575556e-6
allele num: 114682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.186C>T
  hgvsp: ENST00000537703.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.420C>T
  hgvsp: ENST00000394573.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.420C>T
  hgvsp: ENST00000538177.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.420C>T
  hgvsp: ENST00000338602.2:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.420C>T
  hgvsp: ENST00000537624.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.420C>T
  hgvsp: ENST00000537216.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.420C>T
  hgvsp: ENST00000286749.3:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30555
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu140Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

15-85438319-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438319
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438319
    reference: chr 15
allele count: 1
allele frequency: 8.301648707433296e-6
allele num: 120458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.426T>C
  hgvsp: ENST00000537624.1:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.426T>C
  hgvsp: ENST00000286749.3:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.426T>C
  hgvsp: ENST00000394573.1:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.426T>C
  hgvsp: ENST00000338602.2:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.192T>C
  hgvsp: ENST00000537703.1:c.192T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.426T>C
  hgvsp: ENST00000537216.1:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.426T>C
  hgvsp: ENST00000538177.1:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro142Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

15-85438324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438324
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438324
    reference: chr 15
allele count: 2
allele frequency: 1.660908849322349e-5
allele num: 120416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.431G>A
  hgvsp: ENSP00000440546.1:p.Gly144Asp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.197G>A
  hgvsp: ENSP00000443764.1:p.Gly66Asp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.431G>A
  hgvsp: ENSP00000444700.1:p.Gly144Asp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.431G>A
  hgvsp: ENSP00000341629.2:p.Gly144Asp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.431G>A
  hgvsp: ENSP00000378074.1:p.Gly144Asp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.431G>A
  hgvsp: ENSP00000443752.1:p.Gly144Asp
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.431G>A
  hgvsp: ENSP00000286749.3:p.Gly144Asp
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly144Asp
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

15-85438329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438329
    reference: chr 15
allele count: 1
allele frequency: 8.309098462816784e-6
allele num: 120350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.436C>T
  hgvsp: ENSP00000286749.3:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.436C>T
  hgvsp: ENSP00000444700.1:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.436C>T
  hgvsp: ENSP00000440546.1:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.436C>T
  hgvsp: ENSP00000443752.1:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.436C>T
  hgvsp: ENSP00000341629.2:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.436C>T
  hgvsp: ENSP00000378074.1:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.202C>T
  hgvsp: ENSP00000443764.1:p.Pro68Ser
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro146Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ

15-85438333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438333
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438333
    reference: chr 15
allele count: 627
allele frequency: 5.211623499684144e-3
allele num: 120308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.440G>A
  hgvsp: ENSP00000443752.1:p.Arg147His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.440G>A
  hgvsp: ENSP00000378074.1:p.Arg147His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.440G>A
  hgvsp: ENSP00000286749.3:p.Arg147His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.440G>A
  hgvsp: ENSP00000444700.1:p.Arg147His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.440G>A
  hgvsp: ENSP00000341629.2:p.Arg147His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.440G>A
  hgvsp: ENSP00000440546.1:p.Arg147His
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.206G>A
  hgvsp: ENSP00000443764.1:p.Arg69His
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 17755
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 20951
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.75e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg147His
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

15-85438337-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438337
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438337
    reference: chr 15
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.444G>C
  hgvsp: ENST00000538177.1:c.444G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.444G>C
  hgvsp: ENST00000394573.1:c.444G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.444G>C
  hgvsp: ENST00000537216.1:c.444G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.444G>C
  hgvsp: ENST00000338602.2:c.444G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.444G>C
  hgvsp: ENST00000286749.3:c.444G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.444G>C
  hgvsp: ENST00000537624.1:c.444G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.210G>C
  hgvsp: ENST00000537703.1:c.210G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu148Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-85438341-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438341
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438341
    reference: chr 15
allele count: 4
allele frequency: 3.330058775537388e-5
allele num: 120118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.448C>A
  hgvsp: ENSP00000341629.2:p.Leu150Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.448C>A
  hgvsp: ENSP00000378074.1:p.Leu150Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.448C>A
  hgvsp: ENSP00000443752.1:p.Leu150Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.448C>A
  hgvsp: ENSP00000440546.1:p.Leu150Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.448C>A
  hgvsp: ENSP00000444700.1:p.Leu150Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.214C>A
  hgvsp: ENSP00000443764.1:p.Leu72Ile
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.448C>A
  hgvsp: ENSP00000286749.3:p.Leu150Ile
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu150Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

15-85438344-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438344
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438343
    reference: chr 15
allele count: 2
allele frequency: 1.665639522294585e-5
allele num: 120074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.453delG
  hgvsp: ENSP00000443752.1:p.Trp151CysfsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.219delG
  hgvsp: ENSP00000443764.1:p.Trp73CysfsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.453delG
  hgvsp: ENSP00000444700.1:p.Trp151CysfsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.453delG
  hgvsp: ENSP00000341629.2:p.Trp151CysfsTer58
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.453delG
  hgvsp: ENSP00000378074.1:p.Trp151CysfsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.453delG
  hgvsp: ENSP00000286749.3:p.Trp151CysfsTer6
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.453delG
  hgvsp: ENSP00000440546.1:p.Trp151CysfsTer6
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp151CysfsTer6
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: TG
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-85438346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438346
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438346
    reference: chr 15
allele count: 1
allele frequency: 8.332777814812346e-6
allele num: 120008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.453G>A
  hgvsp: ENSP00000440546.1:p.Trp151Ter
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.219G>A
  hgvsp: ENSP00000443764.1:p.Trp73Ter
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.453G>A
  hgvsp: ENSP00000443752.1:p.Trp151Ter
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.453G>A
  hgvsp: ENSP00000378074.1:p.Trp151Ter
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.453G>A
  hgvsp: ENSP00000286749.3:p.Trp151Ter
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.453G>A
  hgvsp: ENSP00000341629.2:p.Trp151Ter
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.453G>A
  hgvsp: ENSP00000444700.1:p.Trp151Ter
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp151Ter
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

15-85438357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438357
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438357
    reference: chr 15
allele count: 4
allele frequency: 3.342637006334297e-5
allele num: 119666
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+3G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+3G>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17434
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
hgvs: c.461+3G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

15-85438361-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438361
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438361
    reference: chr 15
allele count: 4
allele frequency: 3.352161306002045e-5
allele num: 119326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+7G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+7G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+7G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+7G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+7G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+7G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+7G>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17071
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
hgvs: c.461+7G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-85438374-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438374
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438374
    reference: chr 15
allele count: 1
allele frequency: 8.640055296353896e-6
allele num: 115740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+20C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+20C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+20C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+20C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+20C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+20C>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+20C>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14579
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22616
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

15-85438374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438374
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438374
    reference: chr 15
allele count: 1184
allele frequency: 1.022982547088301e-2
allele num: 115740
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+20C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+20C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+20C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+20C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+20C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+20C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+20C>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 3.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 1.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 3.75e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 14579
  bin: 2.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 4.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 2.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4008
  bin: 9.75e1
  variant carriers: 1129
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 39
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

15-85438375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438375
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438375
    reference: chr 15
allele count: 2
allele frequency: 1.729415630458468e-5
allele num: 115646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+21G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+21G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+21G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+21G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+21G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+21G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+21G>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-85438375-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438375
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438375
    reference: chr 15
allele count: 1
allele frequency: 8.64707815229234e-6
allele num: 115646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+21G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+21G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+21G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+21G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+21G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+21G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+21G>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

15-85438376-A-AGGGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438376
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438381
    reference: chr 15
allele count: 37
allele frequency: 3.216552203772929e-4
allele num: 115030
alternate allele: AGGGAG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+24_461+25insGAGGG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+24_461+25insGAGGG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+24_461+25insGAGGG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+24_461+25insGAGGG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+24_461+25insGAGGG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+24_461+25insGAGGG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+24_227+25insGAGGG
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13460
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

15-85438381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438381
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438381
    reference: chr 15
allele count: 2
allele frequency: 1.780468263153209e-5
allele num: 112330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+27G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+27G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+27G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+27G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+27G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+27G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+27G>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5625
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

15-85438384-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438384
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438384
    reference: chr 15
allele count: 38
allele frequency: 3.383431868366693e-4
allele num: 112312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+30C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+30C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+30C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+30C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+30C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+30C>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+30C>G
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11199
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13594
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5368
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7852
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

15-85438386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438386
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438386
    reference: chr 15
allele count: 1
allele frequency: 8.919492659257542e-6
allele num: 112114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+32G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+32G>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-85438392-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438392
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438392
    reference: chr 15
allele count: 1
allele frequency: 9.112613679855656e-6
allele num: 109738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+38G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+38G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+38G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+38G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+38G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+38G>A
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+38G>A
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

15-85438394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438394
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438394
    reference: chr 15
allele count: 1
allele frequency: 9.20030913038678e-6
allele num: 108692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+40C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+40C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+40C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+40C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+40C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+40C>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+40C>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8239
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-85438397-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438397
    reference: chr 15
allele count: 48060
allele frequency: 4.489742535779679e-1
allele num: 107044
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+43A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+43A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+43A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+43A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+43A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+43A>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+43A>C
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.75e1
  variant carriers: 5372
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.5e0
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 1.75e1
  variant carriers: 9507
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 1779
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 1.25e1
  variant carriers: 6242
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 2.25e1
  variant carriers: 8492
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 7.5e0
  variant carriers: 2093
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 3.25e1
  variant carriers: 3054
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.75e1
  variant carriers: 698
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 1135
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 380
genotype quality: GenotypeQuality
  all individuals: 27679
  bin: 9.75e1
  variant carriers: 27013
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 5.25e1
  variant carriers: 1258
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 3.75e1
  variant carriers: 903
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 7.5e0
  variant carriers: 172
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 2.25e1
  variant carriers: 514
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 2.5e0
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 4.75e1
  variant carriers: 1136
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 1.75e1
  variant carriers: 339
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 7.75e1
  variant carriers: 868
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 5.75e1
  variant carriers: 666
num of homozygotes: 11302
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-85438397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438397
    reference: chr 15
allele count: 1
allele frequency: 9.341952841822055e-6
allele num: 107044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+43A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+43A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+43A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+43A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+43A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+43A>G
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+43A>G
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-85438398-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438398
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438398
    reference: chr 15
allele count: 1
allele frequency: 9.374882813964825e-6
allele num: 106668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+44T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+44T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+44T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+44T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+44T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+44T>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+44T>C
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9063
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4743
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8657
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7060
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-85438399-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438399
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438399
    reference: chr 15
allele count: 1
allele frequency: 9.418146885418825e-6
allele num: 106178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+45G>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+45G>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+45G>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+45G>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+45G>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+45G>C
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+45G>C
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5070
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-85438401-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438401
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438401
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 105988
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+47G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+47G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+47G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+47G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+47G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+47G>T
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+47G>T
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

15-85438403-T-TGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85438403
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 85438405
    reference: chr 15
allele count: 1
allele frequency: 9.472746907148135e-6
allele num: 105566
alternate allele: TGA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000378074
  ensembl transcript: ENST00000394573
  gene symbol: SLC28A1
  hgvsc: ENST00000394573.1:c.461+51_461+52dupAG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443752
  ensembl transcript: ENST00000538177
  gene symbol: SLC28A1
  hgvsc: ENST00000538177.1:c.461+51_461+52dupAG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000341629
  ensembl transcript: ENST00000338602
  gene symbol: SLC28A1
  hgvsc: ENST00000338602.2:c.461+51_461+52dupAG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000440546
  ensembl transcript: ENST00000537216
  gene symbol: SLC28A1
  hgvsc: ENST00000537216.1:c.461+51_461+52dupAG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000286749
  ensembl transcript: ENST00000286749
  gene symbol: SLC28A1
  hgvsc: ENST00000286749.3:c.461+51_461+52dupAG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000444700
  ensembl transcript: ENST00000537624
  gene symbol: SLC28A1
  hgvsc: ENST00000537624.1:c.461+51_461+52dupAG
  variant of: http://identifiers.org/hgnc/11001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000156222
  ensembl protein: ENSP00000443764
  ensembl transcript: ENST00000537703
  gene symbol: SLC28A1
  hgvsc: ENST00000537703.1:c.227+51_227+52dupAG
  variant of: http://identifiers.org/hgnc/11001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 2023
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5801
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.372872048325096e-4
allele num: 7284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4074
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.125e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 1.31473e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.151e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13382
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.290322580645161e-4
allele num: 7750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.133e0

DP
type: SiteQuality
SIO_000300: 1.291789e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.452e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

QD
type: SiteQuality
SIO_000300: 9.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

GenotypeQuality
all individuals: 8152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29689
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2898
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.225288174818639e-5
allele num: 44938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e0

QD
type: SiteQuality
SIO_000300: 4.17e0

FS
type: SiteQuality
SIO_000300: 6.967e0

DP
type: SiteQuality
SIO_000300: 1.135192e6

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
all individuals: 1404
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5803
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.292323597828896e-4
allele num: 7738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 3.184e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 1.105662e6

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

GenotypeQuality
all individuals: 1404
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5803
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.577706569008927e-5
allele num: 43690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

FS
type: SiteQuality
SIO_000300: 3.184e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.105662e6

GenotypeQuality
all individuals: 30191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5801
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3964
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.318565400843882e-4
allele num: 7584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.294e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

DP
type: SiteQuality
SIO_000300: 1.090428e6

MQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

GenotypeQuality
all individuals: 7008
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.98406374501992e-4
allele num: 2510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.658019244059327e-5
allele num: 37622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.338e1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.010851e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4204
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17731
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.361796544073152e-5
allele num: 29746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.60302e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

QD
type: SiteQuality
SIO_000300: 6.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.356e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

GenotypeQuality
all individuals: 10905
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.427184466019417e-3
allele num: 412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.689e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 3.424e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.246e0

DP
type: SiteQuality
SIO_000300: 9.57522e5

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 1343
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5804
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.625e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

DP
type: SiteQuality
SIO_000300: 9.58418e5

GenotypeQuality
all individuals: 157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21161
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1076
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.50115e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.681e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

QD
type: SiteQuality
SIO_000300: 1.631e1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

GenotypeQuality
all individuals: 1085
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.176e0

DP
type: SiteQuality
SIO_000300: 2.505199e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.309e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.065e0

QD
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 22486
bin: 9.75e1
variant carriers: 4728

GenotypeQuality
all individuals: 7422
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 961
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 248
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2932
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1457
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2451
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1891
bin: 8.25e1
variant carriers: 3

South Asian
type: Population
allele count: 498
allele frequency: 3.016719166464744e-2
allele num: 16508
num of homozygotes: 11

Other
type: Population
allele count: 41
allele frequency: 4.525386313465784e-2
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.321262766945218e-4
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 255
allele frequency: 2.203594884203249e-2
allele num: 11572
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 2794
allele frequency: 4.200493114438631e-2
allele num: 66516
num of homozygotes: 56

African
type: Population
allele count: 1003
allele frequency: 9.875935407640804e-2
allele num: 10156
num of homozygotes: 52

European (Finnish)
type: Population
allele count: 308
allele frequency: 4.668081236738406e-2
allele num: 6598
num of homozygotes: 8

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

MQ
type: SiteQuality
SIO_000300: 5.867e1

QD
type: SiteQuality
SIO_000300: 1.33e1

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.559328e6

FS
type: SiteQuality
SIO_000300: 5.259e0

GenotypeQuality
all individuals: 3149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7995
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variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

DP
type: SiteQuality
SIO_000300: 2.541131e6

MQ
type: SiteQuality
SIO_000300: 5.842e1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

QD
type: SiteQuality
SIO_000300: 1.917e1

VQSLOD
type: SiteQuality
SIO_000300: -2.018e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
all individuals: 7994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19904
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
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variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

DP
type: SiteQuality
SIO_000300: 2.541434e6

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 7.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

MQ
type: SiteQuality
SIO_000300: 5.867e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21693
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8015
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19905
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1557
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.338000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

FS
type: SiteQuality
SIO_000300: 2.483e0

DP
type: SiteQuality
SIO_000300: 2.544237e6

MQ
type: SiteQuality
SIO_000300: 5.9e1

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

QD
type: SiteQuality
SIO_000300: 8.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

GenotypeQuality
all individuals: 21704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1030
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 18
allele frequency: 1.555209953343701e-3
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.009550123130518e-5
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 365
allele frequency: 3.567937438905181e-2
allele num: 10230
num of homozygotes: 11

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.001e0

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.22e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

DP
type: SiteQuality
SIO_000300: 2.554596e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.417e1

GenotypeQuality
all individuals: 19708
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.771e1

MQRankSum
type: SiteQuality
SIO_000300: -1.424e0

VQSLOD
type: SiteQuality
SIO_000300: -1.492e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.544819e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 5.724e0

QD
type: SiteQuality
SIO_000300: 1.21e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

GenotypeQuality
all individuals: 8056
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 9.25e1
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GenotypeQuality
all individuals: 2008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19709
bin: 9.75e1
variant carriers: 6

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.245e0

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.02e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

DP
type: SiteQuality
SIO_000300: 2.545552e6

MQ
type: SiteQuality
SIO_000300: 5.725e1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19706
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.907e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.223e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.545724e6

VQSLOD
type: SiteQuality
SIO_000300: -6.052e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 7.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22157
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.546686e6

QD
type: SiteQuality
SIO_000300: 9.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.593e0

MQRankSum
type: SiteQuality
SIO_000300: -1.698e0

FS
type: SiteQuality
SIO_000300: 2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

MQ
type: SiteQuality
SIO_000300: 5.839e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.455e0

GenotypeQuality
all individuals: 1032
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.630701551285019e-4
allele num: 8638
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.121e1

DP
type: SiteQuality
SIO_000300: 2.54702e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

VQSLOD
type: SiteQuality
SIO_000300: -1.854e0

FS
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.723e0

GenotypeQuality
all individuals: 22272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19709
bin: 9.75e1
variant carriers: 38

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.189022033243139e-3
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 5.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 2.549729e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 1033
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

DP
type: SiteQuality
SIO_000300: 2.548358e6

FS
type: SiteQuality
SIO_000300: 1.0852e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.585e0

VQSLOD
type: SiteQuality
SIO_000300: -1.482e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

GenotypeQuality
all individuals: 19680
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.576e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 2.549982e6

VQSLOD
type: SiteQuality
SIO_000300: -2.049e0

MQ
type: SiteQuality
SIO_000300: 5.828e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.42e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.216e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.347e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.550702e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.227e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1033
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.511e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.725e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.129e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.336e1

DP
type: SiteQuality
SIO_000300: 2.550783e6

MQRankSum
type: SiteQuality
SIO_000300: -5.631e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.221e-1

FS
type: SiteQuality
SIO_000300: 1.939e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

QD
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 8094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 2.550675e6

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.227e0

QD
type: SiteQuality
SIO_000300: 1.166e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.02e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.807e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2670
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 18
allele frequency: 2.080443828016643e-3
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 5.8e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.802e0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

DP
type: SiteQuality
SIO_000300: 2.551728e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 8161
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.815100154083205e-4
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 1.464e1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.97568e6

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19677
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variant carriers: 1

GenotypeQuality
all individuals: 2659
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22315
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variant carriers: 0

GenotypeQuality
all individuals: 1554
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variant carriers: 0

GenotypeQuality
all individuals: 2009
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.776e0

DP
type: SiteQuality
SIO_000300: 2.550207e6

VQSLOD
type: SiteQuality
SIO_000300: -1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

FS
type: SiteQuality
SIO_000300: 9.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.981e0

MQ
type: SiteQuality
SIO_000300: 5.575e1

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
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variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.084302325581395e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.550582e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

GenotypeQuality
all individuals: 1032
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 3158
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19669
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2003
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999310158663508e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.307e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.704e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.26e-1

DP
type: SiteQuality
SIO_000300: 2.549158e6

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.014e0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1032
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variant carriers: 0

GenotypeQuality
all individuals: 21917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 8000
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variant carriers: 0

GenotypeQuality
all individuals: 2002
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variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.018e-1

FS
type: SiteQuality
SIO_000300: 6.15e-1

MQ
type: SiteQuality
SIO_000300: 5.656e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.781e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.356e0

DP
type: SiteQuality
SIO_000300: 2.546826e6

GenotypeQuality
all individuals: 433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.546674e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1029
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.001860576778802e-5
allele num: 66646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.463e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 2.555e0

QD
type: SiteQuality
SIO_000300: 1.192e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.754e0

DP
type: SiteQuality
SIO_000300: 2.546527e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3157
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19661
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2645
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.625346901017577e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

DP
type: SiteQuality
SIO_000300: 2.546281e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.072e0

QD
type: SiteQuality
SIO_000300: 1.266e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.645e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.868e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.489e0

QD
type: SiteQuality
SIO_000300: 1.232e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.007e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 2.548707e6

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

MQ
type: SiteQuality
SIO_000300: 5.561e1

FS
type: SiteQuality
SIO_000300: 9.622999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.437e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

GenotypeQuality
all individuals: 1051
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2746
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.007009813739235e-5
allele num: 59916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15750
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.665e0

MQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.69e-1

DP
type: SiteQuality
SIO_000300: 2.774932e6

QD
type: SiteQuality
SIO_000300: 1.449e1

MQ
type: SiteQuality
SIO_000300: 5.584e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.808e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.56e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2728
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.667834150572067e-5
allele num: 59958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

MQ
type: SiteQuality
SIO_000300: 5.394e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.365e0

FS
type: SiteQuality
SIO_000300: 1.719e0

QD
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.77212e6

VQSLOD
type: SiteQuality
SIO_000300: -1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

GenotypeQuality
all individuals: 737
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 984
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18054
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variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.66939334245935e-5
allele num: 59902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.376e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.847e0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 2.771254e6

MQ
type: SiteQuality
SIO_000300: 5.371e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.105e0

FS
type: SiteQuality
SIO_000300: 1.2443e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.164e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

GenotypeQuality
all individuals: 67
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variant carriers: 19

GenotypeQuality
all individuals: 10
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GenotypeQuality
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variant carriers: 36

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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variant carriers: 5

African
type: Population
allele count: 3106
allele frequency: 3.017291626190013e-1
allele num: 10294
num of homozygotes: 465

European (Finnish)
type: Population
allele count: 1920
allele frequency: 2.906448683015441e-1
allele num: 6606
num of homozygotes: 295

South Asian
type: Population
allele count: 3429
allele frequency: 2.077174703174219e-1
allele num: 16508
num of homozygotes: 379

Latino
type: Population
allele count: 2347
allele frequency: 2.029574541681079e-1
allele num: 11564
num of homozygotes: 225

East Asian
type: Population
allele count: 1722
allele frequency: 1.993055555555556e-1
allele num: 8640
num of homozygotes: 171

Other
type: Population
allele count: 267
allele frequency: 2.947019867549669e-1
allele num: 906
num of homozygotes: 39

European (Non-Finnish)
type: Population
allele count: 21116
allele frequency: 3.175338345864662e-1
allele num: 66500
num of homozygotes: 3335

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

QD
type: SiteQuality
SIO_000300: 2.191e1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e0

DP
type: SiteQuality
SIO_000300: 3.864885e6

MQ
type: SiteQuality
SIO_000300: 5.616e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 577
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GenotypeQuality
all individuals: 79
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.191e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

MQ
type: SiteQuality
SIO_000300: 5.616e1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

DP
type: SiteQuality
SIO_000300: 3.864885e6

GenotypeQuality
all individuals: 1031
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10595
bin: 6.75e1
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599232368463138e-5
allele num: 62530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.305e1

QD
type: SiteQuality
SIO_000300: 1.057e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.845e0

GenotypeQuality
all individuals: 1905
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 3.156e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.956e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.960773e6

MQ
type: SiteQuality
SIO_000300: 5.614e1

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 33333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
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GenotypeQuality
all individuals: 938
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.524e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.716e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

MQ
type: SiteQuality
SIO_000300: 5.682e1

FS
type: SiteQuality
SIO_000300: 2.489e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e0

DP
type: SiteQuality
SIO_000300: 1.951654e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 11344
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66068
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.018e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.736e0

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.949581e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 622

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 33456
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 92
allele frequency: 1.395631067961165e-2
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 35
allele frequency: 3.024019353723864e-3
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 484
allele frequency: 7.328225782030706e-3
allele num: 66046
num of homozygotes: 2

African
type: Population
allele count: 8
allele frequency: 7.958615200955034e-4
allele num: 10052
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.333333333333334e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028834504482675e-4
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.157e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.964879e6

QD
type: SiteQuality
SIO_000300: 1.262e1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33728
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variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515702679762338e-5
allele num: 65976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

FS
type: SiteQuality
SIO_000300: 1.901e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

DP
type: SiteQuality
SIO_000300: 1.925862e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 3478
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variant carriers: 0

GenotypeQuality
all individuals: 1385
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GenotypeQuality
all individuals: 3232
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variant carriers: 4

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 1914
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.000800320128051e-4
allele num: 9996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.321e1

DP
type: SiteQuality
SIO_000300: 1.923838e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
type: SiteQuality
SIO_000300: 5.817e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.444e0

VQSLOD
type: SiteQuality
SIO_000300: -2.163e0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.034348828741352e-5
allele num: 65912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.646e1

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

DP
type: SiteQuality
SIO_000300: 1.922361e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518095700752976e-5
allele num: 65872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

DP
type: SiteQuality
SIO_000300: 1.920774e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e0

FS
type: SiteQuality
SIO_000300: 7.543e0

VQSLOD
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

GenotypeQuality
all individuals: 926
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3217
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 239
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.022974607013301e-4
allele num: 9924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.27e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.784e0

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

DP
type: SiteQuality
SIO_000300: 1.908121e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3417
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.430724355858046e-4
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.298e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.894064e6

FS
type: SiteQuality
SIO_000300: 8.734e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.861e0

GenotypeQuality
all individuals: 836
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5984
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4008
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583882412569691e-5
allele num: 63136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.68551e6

VQSLOD
type: SiteQuality
SIO_000300: 9.44e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.872e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

GenotypeQuality
all individuals: 22616
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2207
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1460
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 836
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 369
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9214
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5984
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 664
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 206
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 254
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 121
allele frequency: 1.071555083244775e-2
allele num: 11292
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.69630557294928e-4
allele num: 6388
num of homozygotes: 0

African
type: Population
allele count: 866
allele frequency: 9.329885800474036e-2
allele num: 9282
num of homozygotes: 35

Other
type: Population
allele count: 7
allele frequency: 8.027522935779817e-3
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.90376363859262e-4
allele num: 16314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 179
allele frequency: 2.835149518499747e-3
allele num: 63136
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.68551e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.77e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

VQSLOD
type: SiteQuality
SIO_000300: 9.44e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.872e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226993865030675e-4
allele num: 16300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.004e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.902e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.306e0

QD
type: SiteQuality
SIO_000300: 1.562e1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

DP
type: SiteQuality
SIO_000300: 1.668657e6

GenotypeQuality
all individuals: 2954
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9371
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.089087344805053e-4
allele num: 9182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.668657e6

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.902e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.306e0

FS
type: SiteQuality
SIO_000300: 1.004e0

QD
type: SiteQuality
SIO_000300: 1.562e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

GenotypeQuality
all individuals: 2978
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 3059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
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variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.912472508207694e-4
allele num: 62746
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.663825253063399e-4
allele num: 11262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.572821642025794e-4
allele num: 6358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.289292730844794e-3
allele num: 16288
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.792e0

FS
type: SiteQuality
SIO_000300: 8.93e-1

DP
type: SiteQuality
SIO_000300: 1.581049e6

MQ
type: SiteQuality
SIO_000300: 5.173e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 8.91e0

GenotypeQuality
all individuals: 7608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2283
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
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variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.135589370883489e-4
allele num: 8806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61116
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.188118811881188e-5
allele num: 16160
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.529e1

DP
type: SiteQuality
SIO_000300: 1.380317e6

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

MQ
type: SiteQuality
SIO_000300: 5.993e1

FS
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

GenotypeQuality
all individuals: 14746
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1365
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5611
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 9.75e1
variant carriers: 37

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.601024655779699e-4
allele num: 6246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.301921884686919e-3
allele num: 16130
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 2.7183762232693e-4
allele num: 11036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.126476265253378e-4
allele num: 61134
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 4.194e0

VQSLOD
type: SiteQuality
SIO_000300: -1.786e0

DP
type: SiteQuality
SIO_000300: 1.371598e6

MQRankSum
type: SiteQuality
SIO_000300: -3.469e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.032e1

QD
type: SiteQuality
SIO_000300: 2.007e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5759
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6384
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 7945
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GenotypeQuality
all individuals: 4081
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variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
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variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14765
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639129294518752e-5
allele num: 61008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.817e1

DP
type: SiteQuality
SIO_000300: 1.359021e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.909e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.59e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 6548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4672
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 7.5e0
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GenotypeQuality
all individuals: 793
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variant carriers: 0

GenotypeQuality
all individuals: 1787
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variant carriers: 0

GenotypeQuality
all individuals: 9868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.285016705217168e-4
allele num: 7782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 5.379e0

DP
type: SiteQuality
SIO_000300: 1.287479e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.509e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.13e-1

QD
type: SiteQuality
SIO_000300: 8.81e0

GenotypeQuality
all individuals: 6885
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3046
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 3940
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variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4962
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variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3260
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178967224711153e-4
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 1.421e1

DP
type: SiteQuality
SIO_000300: 1.276811e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

GenotypeQuality
all individuals: 3045
bin: 3.25e1
variant carriers: 643

GenotypeQuality
all individuals: 827
bin: 9.25e1
variant carriers: 642

GenotypeQuality
all individuals: 681
bin: 1.25e1
variant carriers: 203

GenotypeQuality
all individuals: 1525
bin: 4.25e1
variant carriers: 589

GenotypeQuality
all individuals: 938
bin: 7.25e1
variant carriers: 566

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 465

GenotypeQuality
all individuals: 1934
bin: 2.75e1
variant carriers: 382

GenotypeQuality
all individuals: 1080
bin: 8.25e1
variant carriers: 776

GenotypeQuality
all individuals: 1826
bin: 6.75e1
variant carriers: 1044

GenotypeQuality
all individuals: 4098
bin: 6.25e1
variant carriers: 1160

East Asian
type: Population
allele count: 5099
allele frequency: 6.755431902490726e-1
allele num: 7548
num of homozygotes: 1678

Other
type: Population
allele count: 368
allele frequency: 4.412470023980815e-1
allele num: 834
num of homozygotes: 81

Latino
type: Population
allele count: 5984
allele frequency: 5.825545171339563e-1
allele num: 10272
num of homozygotes: 1664

African
type: Population
allele count: 1806
allele frequency: 2.137278106508876e-1
allele num: 8450
num of homozygotes: 175

South Asian
type: Population
allele count: 9891
allele frequency: 6.202809482001755e-1
allele num: 15946
num of homozygotes: 3074

European (Finnish)
type: Population
allele count: 2477
allele frequency: 4.151860543077439e-1
allele num: 5966
num of homozygotes: 511

European (Non-Finnish)
type: Population
allele count: 22435
allele frequency: 3.866236989039774e-1
allele num: 58028
num of homozygotes: 4119

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 1.277379e6

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.303e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

GenotypeQuality
all individuals: 1313
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27679
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2369
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.723305990211622e-5
allele num: 58028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.303e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 1.277379e6

GenotypeQuality
all individuals: 2455
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3921
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7387
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7879
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.723009063027672e-5
allele num: 58038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -8.587e-1

DP
type: SiteQuality
SIO_000300: 1.189244e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeQuality
all individuals: 1683
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7397
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.192748091603053e-4
allele num: 8384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.442e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.564e-1

DP
type: SiteQuality
SIO_000300: 1.183362e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.175e0

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.373e0

QD
type: SiteQuality
SIO_000300: 1.458e1

GenotypeQuality
all individuals: 7917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7387
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3929
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 487
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.396e0

DP
type: SiteQuality
SIO_000300: 1.181036e6

QD
type: SiteQuality
SIO_000300: 3.311e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0