15-63829349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829349
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829349
    reference: chr 15
allele count: 9
allele frequency: 7.486399707198589e-5
allele num: 120218
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.278C>T
  hgvsp: ENSP00000369681.3:p.Thr93Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.212C>T
  hgvsp: ENSP00000453093.1:p.Thr71Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.212C>T
  hgvsp: ENSP00000268049.7:p.Thr71Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*226C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-25745C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.227C>T
  hgvsp: ENSP00000453619.1:p.Thr76Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.371C>T
  hgvsp: ENSP00000453688.1:p.Thr124Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.91+32320C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.13C>T
  hgvsp: ENSP00000445793.2:p.Thr5Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*376C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*260C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.46C>T
  hgvsp: ENSP00000452947.1:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.152+4443C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-25745C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.278C>T
  hgvsp: ENSP00000445615.1:p.Thr93Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.152+4443C>T
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12557
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38391
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr93Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

15-63829350-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829350
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829350
    reference: chr 15
allele count: 2
allele frequency: 1.6641427168794e-5
allele num: 120182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.279A>G
  hgvsp: ENST00000536001.1:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.14A>G
  hgvsp: ENST00000538686.2:c.14A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-25744A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*227A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*377A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.228A>G
  hgvsp: ENST00000558285.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.279A>G
  hgvsp: ENST00000380324.3:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.213A>G
  hgvsp: ENST00000559771.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.47A>G
  hgvsp: ENST00000559257.1:c.47A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.372A>G
  hgvsp: ENST00000561442.1:c.372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*261A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.213A>G
  hgvsp: ENST00000268049.7:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.152+4444A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-25744A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.152+4444A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.91+32321A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr93Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

15-63829357-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829357
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829357
    reference: chr 15
allele count: 1
allele frequency: 8.353102342209896e-6
allele num: 119716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.152+4451T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-25737T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-25737T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.152+4451T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.19+2T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.91+32328T>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.284+2T>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

15-63829363-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829363
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829363
    reference: chr 15
allele count: 7
allele frequency: 5.864218215937269e-5
allele num: 119368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-25731A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.19+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.152+4457A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.91+32334A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.152+4457A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+8A>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-25731A>T
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36330
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.284+8A>T
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

15-63829371-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829371
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829371
    reference: chr 15
allele count: 1
allele frequency: 8.41283462049703e-6
allele num: 118866
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.19+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-25723C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.152+4465C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.152+4465C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.91+32342C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+16C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-25723C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+16C>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

15-63829378-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829378
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829379
    reference: chr 15
allele count: 1
allele frequency: 8.43340979624882e-6
allele num: 118576
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.19+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.91+32350dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.152+4473dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-25715dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-25715dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.152+4473dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+24dupG
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+24dupG
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

15-63829379-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829379
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829379
    reference: chr 15
allele count: 6
allele frequency: 5.062009617818274e-5
allele num: 118530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.152+4473G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.19+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.91+32350G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.152+4473G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-25715G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-25715G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+24G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+24G>C
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31219
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS

15-63829385-TCTTACTGTGTGCAAGTGTGCTCTCCTCCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829385
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829356
    reference: chr 15
allele count: 1
allele frequency: 8.460523198754612e-6
allele num: 118196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: TCTTACTGTGTGCAAGTGTGCTCTCCTCCC
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-63829388-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63829388
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63829388
    reference: chr 15
allele count: 3
allele frequency: 2.541253007149392e-5
allele num: 118052
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.152+4482T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.91+32359T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-25706T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.152+4482T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-25706T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.19+33T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+33T>C
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

15-63836908-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63836908
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63836908
    reference: chr 15
allele count: 2
allele frequency: 1.865671641791045e-4
allele num: 10720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.323-330C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.153-9006G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-18186G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.-3G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.153-9006G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-25724G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.276-330C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*137+2517G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.275-330C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-18186G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+7553G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+7553G>T
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

15-63836935-A-AGTTCATGGTATATTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63836935
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63836950
    reference: chr 15
allele count: 2
allele frequency: 1.863932898415657e-4
allele num: 10730
alternate allele: AGTTCATGGTATATTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-63836952-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63836952
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63836952
    reference: chr 15
allele count: 1
allele frequency: 9.323140033563304e-5
allele num: 10726
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*137+2561A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.276-374T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.153-8962A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.275-374T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-25680A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-18142A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.17+25A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.323-374T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+7597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.153-8962A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-18142A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-63836954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63836954
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63836954
    reference: chr 15
allele count: 1
allele frequency: 9.324878776575905e-5
allele num: 10724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.323-376C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.17+27G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-18140G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.276-376C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*137+2563G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-25678G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.275-376C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-18140G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.153-8960G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+7599G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.153-8960G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+7599G>A
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

15-63836975-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63836975
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63836975
    reference: chr 15
allele count: 1
allele frequency: 9.337068160597572e-5
allele num: 10710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.284+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.218+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*382+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-18119G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.218+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.153-8939G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-18119G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.377+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-25657G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.276-397C>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.17+48G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*266+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*137+2584G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.323-397C>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.284+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.233+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.153-8939G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.52+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*232+7620G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.275-397C>G
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-63845872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845872
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845872
    reference: chr 15
allele count: 1
allele frequency: 8.518758305789349e-6
allele num: 117388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.219-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.219-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*138-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*267-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.285-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.285-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.53-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2331G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.341C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1797G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*383-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16760C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.18-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.378-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.234-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*233-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.153-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.153-42C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9222C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9222C>T
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-63845890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845890
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845890
    reference: chr 15
allele count: 2
allele frequency: 1.678584617450566e-5
allele num: 119148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.234-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.285-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.219-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9204C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.153-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.53-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*267-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*383-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.359C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1815G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9204C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.378-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1815G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16742C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.285-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2349G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.153-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*233-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.18-24C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*138-24C>T
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

15-63845902-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845902
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845902
    reference: chr 15
allele count: 2
allele frequency: 1.662234042553192e-5
allele num: 120320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.234-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.153-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.285-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*233-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1827A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1827A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.219-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.153-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*267-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.371T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*383-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.285-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*138-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.378-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16730T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2361A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9192T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.53-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.18-12T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9192T>C
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

15-63845910-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845910
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845910
    reference: chr 15
allele count: 40
allele frequency: 3.311916274756574e-4
allele num: 120776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.153-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*267-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.18-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.379G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9184G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.219-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.219-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.285-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*383-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.234-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9184G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.53-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.153-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16722G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.378-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.285-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*138-4G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2369C>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1835C>G
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.285-4G>C
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

15-63845919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845919
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845919
    reference: chr 15
allele count: 2
allele frequency: 1.652400938563733e-5
allele num: 121036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9175G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.224G>A
  hgvsp: ENSP00000453093.1:p.Arg75His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.239G>A
  hgvsp: ENSP00000453619.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16713G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.23G>A
  hgvsp: ENSP00000453138.1:p.Arg8His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.383G>A
  hgvsp: ENSP00000453688.1:p.Arg128His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.58G>A
  hgvsp: ENSP00000452947.1:p.Arg20His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2378C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1844C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*272G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.158G>A
  hgvsp: ENSP00000445828.1:p.Arg53His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9175G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.224G>A
  hgvsp: ENSP00000268049.7:p.Arg75His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.290G>A
  hgvsp: ENSP00000445615.1:p.Arg97His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.158G>A
  hgvsp: ENSP00000453194.1:p.Arg53His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.290G>A
  hgvsp: ENSP00000369681.3:p.Arg97His
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1844C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*388G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*143G>A
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg97His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

15-63845919-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845919
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845919
    reference: chr 15
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*272G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.158G>T
  hgvsp: ENSP00000453194.1:p.Arg53Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.224G>T
  hgvsp: ENSP00000453093.1:p.Arg75Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2378C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.239G>T
  hgvsp: ENSP00000453619.1:p.Arg80Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.290G>T
  hgvsp: ENSP00000369681.3:p.Arg97Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*143G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16713G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*238G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.224G>T
  hgvsp: ENSP00000268049.7:p.Arg75Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1844C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453688
  ensembl transcript: ENST00000561442
  gene symbol: USP3
  hgvsc: ENST00000561442.1:c.383G>T
  hgvsp: ENSP00000453688.1:p.Arg128Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.23G>T
  hgvsp: ENSP00000453138.1:p.Arg8Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.290G>T
  hgvsp: ENSP00000445615.1:p.Arg97Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*388G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.388G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.158G>T
  hgvsp: ENSP00000445828.1:p.Arg53Leu
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9175G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9175G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1844C>A
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg97Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

15-63845936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845936
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845936
    reference: chr 15
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.405G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.241G>A
  hgvsp: ENSP00000268049.7:p.Val81Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2395C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.175G>A
  hgvsp: ENSP00000445828.1:p.Val59Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.175G>A
  hgvsp: ENSP00000453194.1:p.Val59Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*405G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.241G>A
  hgvsp: ENSP00000453093.1:p.Val81Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*289G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*160G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.75G>A
  hgvsp: ENSP00000452947.1:p.Val26Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9158G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.256G>A
  hgvsp: ENSP00000453619.1:p.Val86Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.307G>A
  hgvsp: ENSP00000369681.3:p.Val103Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1861C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.40G>A
  hgvsp: ENSP00000453138.1:p.Val14Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16696G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.307G>A
  hgvsp: ENSP00000445615.1:p.Val103Ile
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9158G>A
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val103Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/15-63845948-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845948
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845948
    reference: chr 15
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.319A>C
  hgvsp: ENSP00000445615.1:p.Lys107Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.187A>C
  hgvsp: ENSP00000445828.1:p.Lys63Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.87A>C
  hgvsp: ENSP00000452947.1:p.Lys30Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1873T>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.268A>C
  hgvsp: ENSP00000453619.1:p.Lys90Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*172A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.253A>C
  hgvsp: ENSP00000453093.1:p.Lys85Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9146A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*301A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16684A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*267A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.52A>C
  hgvsp: ENSP00000453138.1:p.Lys18Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.187A>C
  hgvsp: ENSP00000453194.1:p.Lys63Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.319A>C
  hgvsp: ENSP00000369681.3:p.Lys107Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1873T>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*417A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9146A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.417A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.253A>C
  hgvsp: ENSP00000268049.7:p.Lys85Gln
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys107Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-63845957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845957
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845957
    reference: chr 15
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*276C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9137C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.196C>T
  hgvsp: ENST00000560070.1:c.196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1882G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.277C>T
  hgvsp: ENST00000558285.1:c.277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.262C>T
  hgvsp: ENST00000268049.7:c.262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2416G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.196C>T
  hgvsp: ENST00000540797.1:c.196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.328C>T
  hgvsp: ENST00000380324.3:c.328C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.61C>T
  hgvsp: ENST00000559711.1:c.61C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.328C>T
  hgvsp: ENST00000536001.1:c.328C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*426C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*310C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.262C>T
  hgvsp: ENST00000559771.1:c.262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1882G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.96C>T
  hgvsp: ENST00000559257.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*181C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9137C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.426C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16675C>T
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu110Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-63845966-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845966
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845966
    reference: chr 15
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.337A>C
  hgvsp: ENSP00000369681.3:p.Lys113Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*190A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.205A>C
  hgvsp: ENSP00000445828.1:p.Lys69Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.70A>C
  hgvsp: ENSP00000453138.1:p.Lys24Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.105A>C
  hgvsp: ENSP00000452947.1:p.Lys36Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*435A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.286A>C
  hgvsp: ENSP00000453619.1:p.Lys96Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9128A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.271A>C
  hgvsp: ENSP00000453093.1:p.Lys91Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.271A>C
  hgvsp: ENSP00000268049.7:p.Lys91Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.205A>C
  hgvsp: ENSP00000453194.1:p.Lys69Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2425T>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1891T>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.337A>C
  hgvsp: ENSP00000445615.1:p.Lys113Gln
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*319A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*285A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1891T>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.435A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16666A>C
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys113Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-63845978-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845978
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845978
    reference: chr 15
allele count: 4
allele frequency: 3.306331625061994e-5
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*202C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16654C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9116C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.349C>T
  hgvsp: ENSP00000445615.1:p.His117Tyr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1903G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9116C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.349C>T
  hgvsp: ENSP00000369681.3:p.His117Tyr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.217C>T
  hgvsp: ENSP00000453194.1:p.His73Tyr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.283C>T
  hgvsp: ENSP00000453093.1:p.His95Tyr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.217C>T
  hgvsp: ENSP00000445828.1:p.His73Tyr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*331C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*297C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.117C>T
  hgvsp: ENSP00000452947.1:p.His40Tyr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.447C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1903G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*447C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.283C>T
  hgvsp: ENSP00000268049.7:p.His95Tyr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.298C>T
  hgvsp: ENSP00000453619.1:p.His100Tyr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2437G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.82C>T
  hgvsp: ENSP00000453138.1:p.His28Tyr
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.His117Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

15-63845985-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63845985
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63845985
    reference: chr 15
allele count: 1
allele frequency: 8.275679433281473e-6
allele num: 120836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*338A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.290A>G
  hgvsp: ENSP00000268049.7:p.Gln97Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.224A>G
  hgvsp: ENSP00000445828.1:p.Gln75Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2444T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*209A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.89A>G
  hgvsp: ENSP00000453138.1:p.Gln30Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9109A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*304A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.356A>G
  hgvsp: ENSP00000445615.1:p.Gln119Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.290A>G
  hgvsp: ENSP00000453093.1:p.Gln97Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.305A>G
  hgvsp: ENSP00000453619.1:p.Gln102Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.454A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.124A>G
  hgvsp: ENSP00000452947.1:p.Gln42Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.356A>G
  hgvsp: ENSP00000369681.3:p.Gln119Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.224A>G
  hgvsp: ENSP00000453194.1:p.Gln75Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9109A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*454A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1910T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1910T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16647A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln119Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

15-63846009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63846009
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63846009
    reference: chr 15
allele count: 26
allele frequency: 2.171189979123173e-4
allele num: 119750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.236+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.236+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1934C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*350+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.302+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.466+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*316+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9085G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.317+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1934C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*466+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2468C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9085G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.101+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.302+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*221+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.368+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.136+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.368+12G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16623G>A
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

15-63846025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63846025
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63846025
    reference: chr 15
allele count: 27
allele frequency: 2.277212691665401e-4
allele num: 118566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.302+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9069G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.317+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*221+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.101+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.236+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.368+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.136+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*466+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.466+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*350+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2484C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.368+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1950C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1950C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*316+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.302+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16607G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.236+28G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9069G>A
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

15-63846025-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63846025
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63846025
    reference: chr 15
allele count: 1
allele frequency: 8.434121080242228e-6
allele num: 118566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*221+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.317+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.368+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.466+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.302+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9069G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1950C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.302+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*316+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*466+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*350+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1950C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2484C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.236+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.368+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16607G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.136+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.101+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.236+28G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9069G>T
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

15-63846029-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63846029
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63846030
    reference: chr 15
allele count: 3
allele frequency: 2.53944606216564e-5
allele num: 118136
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1955dupA
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*466+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.302+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*350+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.302+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9064dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.236+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.466+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16602dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.236+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.317+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.101+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1955dupA
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2489dupA
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9064dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.368+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*221+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*316+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.368+33dupT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.136+33dupT
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

15-63846034-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63846034
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63846034
    reference: chr 15
allele count: 1
allele frequency: 8.506728822498597e-6
allele num: 117554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9060A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9060A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.236+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.302+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.317+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.302+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.236+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.368+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.101+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.136+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*221+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1959T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.466+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*350+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*316+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1959T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.368+37A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16598A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2493T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*466+37A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-63846035-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63846035
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63846035
    reference: chr 15
allele count: 12
allele frequency: 1.020581731587005e-4
allele num: 117580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.302+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.466+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.368+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.302+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-2494T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.101+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-9059A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-1960T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*350+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.368+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*316+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.317+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560067
  gene symbol: USP3-AS1
  hgvsc: ENST00000560067.1:n.181-1960T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-9059A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.236+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*466+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-16597A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.236+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.136+38A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*221+38A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

15-63848817-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848817
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848817
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 49700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13815A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*317-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6277A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6277A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.237-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.303-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*467-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.369-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.102-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*351-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.467-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.318-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.237-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.303-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.369-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*222-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.137-49A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4742T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5276T>C
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

15-63848820-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848820
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848820
    reference: chr 15
allele count: 5
allele frequency: 9.94708152628019e-5
allele num: 50266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13812A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.369-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5279T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*467-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4745T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*351-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.467-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.303-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.318-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.303-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.237-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6274A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.369-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*317-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*222-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6274A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.102-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.137-46A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.237-46A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

15-63848824-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848824
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848824
    reference: chr 15
allele count: 1
allele frequency: 1.968969047806568e-5
allele num: 50788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.318-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.303-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.303-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.102-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*351-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.369-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6270A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*467-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.137-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.237-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*317-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.467-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6270A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.369-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*222-42A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13808A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4749T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5283T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.237-42A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14629
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

15-63848846-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848846
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848846
    reference: chr 15
allele count: 1
allele frequency: 1.732441703336683e-5
allele num: 57722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.303-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*222-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.303-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*317-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.369-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.102-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4771T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6248A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.369-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.467-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6248A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5305T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*467-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.137-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.615T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13786A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*351-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.318-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.237-20A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.237-20A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

15-63848848-CTGTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848848
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848844
    reference: chr 15
allele count: 1
allele frequency: 1.69658308167351e-5
allele num: 58942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6242_176-6239delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.609_612delAACA
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.137-14_137-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.102-14_102-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5311_227-5308delAACA
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.369-14_369-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.467-14_467-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*317-14_*317-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13780_92-13777delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.237-14_237-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.303-14_303-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4777_228-4774delAACA
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.318-14_318-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.237-14_237-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*467-14_*467-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.303-14_303-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*351-14_*351-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6242_-100-6239delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*222-14_*222-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.369-14_369-11delTTGT
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: CTGTT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-63848860-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848860
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848860
    reference: chr 15
allele count: 26
allele frequency: 3.700119542323675e-4
allele num: 70268
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.369-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.102-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*467-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*222-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4785A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*351-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.303-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.467-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6234T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.237-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*317-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5319A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.137-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.369-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13772T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6234T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.601A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.237-6T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.318-6T>C
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.369-6T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

15-63848879-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848879
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848879
    reference: chr 15
allele count: 2
allele frequency: 2.281854691493246e-5
allele num: 87648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.331G>T
  hgvsp: ENSP00000453619.1:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000558925
  gene symbol: USP3
  hgvsc: ENST00000558925.1:n.480G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*364G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.316G>T
  hgvsp: ENSP00000268049.7:p.Ala106Ser
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.582C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5338C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.150G>T
  hgvsp: ENSP00000452947.1:p.Ala51Ser
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*235G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.382G>T
  hgvsp: ENSP00000369681.3:p.Ala128Ser
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6215G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.250G>T
  hgvsp: ENSP00000445828.1:p.Ala84Ser
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.382G>T
  hgvsp: ENSP00000445615.1:p.Ala128Ser
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.316G>T
  hgvsp: ENSP00000453093.1:p.Ala106Ser
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13753G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4804C>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.115G>T
  hgvsp: ENSP00000453138.1:p.Ala39Ser
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*480G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*330G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6215G>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.250G>T
  hgvsp: ENSP00000453194.1:p.Ala84Ser
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala128Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-63848902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848902
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848902
    reference: chr 15
allele count: 1
allele frequency: 1.059613876703329e-5
allele num: 94374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.405A>G
  hgvsp: ENST00000536001.1:c.405A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*503A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.273A>G
  hgvsp: ENST00000540797.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.138A>G
  hgvsp: ENST00000559711.1:c.138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.339A>G
  hgvsp: ENST00000559771.1:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*258A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6192A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*387A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13730A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.173A>G
  hgvsp: ENST00000559257.1:c.173A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*353A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6192A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.339A>G
  hgvsp: ENST00000268049.7:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.405A>G
  hgvsp: ENST00000380324.3:c.405A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.273A>G
  hgvsp: ENST00000560070.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4827T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.354A>G
  hgvsp: ENST00000558285.1:c.354A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5361T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.559T>C
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys135Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-63848903-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848903
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848903
    reference: chr 15
allele count: 1
allele frequency: 1.058761249338274e-5
allele num: 94450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.274C>G
  hgvsp: ENSP00000445828.1:p.Leu92Val
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*354C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.406C>G
  hgvsp: ENSP00000369681.3:p.Leu136Val
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*388C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*259C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*504C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.406C>G
  hgvsp: ENSP00000445615.1:p.Leu136Val
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6191C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.340C>G
  hgvsp: ENSP00000453093.1:p.Leu114Val
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5362G>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.558G>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.355C>G
  hgvsp: ENSP00000453619.1:p.Leu119Val
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6191C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.340C>G
  hgvsp: ENSP00000268049.7:p.Leu114Val
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4828G>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.139C>G
  hgvsp: ENSP00000453138.1:p.Leu47Val
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.274C>G
  hgvsp: ENSP00000453194.1:p.Leu92Val
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13729C>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.174C>G
  hgvsp: ENSP00000452947.1:p.Leu59Val
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu136Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

15-63848917-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848917
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848917
    reference: chr 15
allele count: 2
allele frequency: 2.181548463099108e-5
allele num: 91678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*518A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.420A>G
  hgvsp: ENST00000380324.3:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.188A>G
  hgvsp: ENST00000559257.1:c.188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.288A>G
  hgvsp: ENST00000560070.1:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*273A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.354A>G
  hgvsp: ENST00000268049.7:c.354A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*402A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6177A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5376T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.354A>G
  hgvsp: ENST00000559771.1:c.354A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.544T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4842T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.369A>G
  hgvsp: ENST00000558285.1:c.369A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.420A>G
  hgvsp: ENST00000536001.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*368A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.153A>G
  hgvsp: ENST00000559711.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.288A>G
  hgvsp: ENST00000540797.1:c.288A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13715A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6177A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser140Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-63848920-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848920
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848920
    reference: chr 15
allele count: 1
allele frequency: 1.102681721947777e-5
allele num: 90688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.372A>G
  hgvsp: ENST00000558285.1:c.372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13712A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.291A>G
  hgvsp: ENST00000560070.1:c.291A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.423A>G
  hgvsp: ENST00000536001.1:c.423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*371A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.357A>G
  hgvsp: ENST00000559771.1:c.357A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*405A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5379T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*521A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*276A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6174A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.291A>G
  hgvsp: ENST00000540797.1:c.291A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.191A>G
  hgvsp: ENST00000559257.1:c.191A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.541T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.423A>G
  hgvsp: ENST00000380324.3:c.423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6174A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.357A>G
  hgvsp: ENST00000268049.7:c.357A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.156A>G
  hgvsp: ENST00000559711.1:c.156A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4845T>C
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr141Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-63848933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848933
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848933
    reference: chr 15
allele count: 1
allele frequency: 1.1928619143048e-5
allele num: 83832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4858A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.204T>C
  hgvsp: ENST00000559257.1:c.204T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*384T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.528A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5392A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.169T>C
  hgvsp: ENST00000559711.1:c.169T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6161T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.436T>C
  hgvsp: ENST00000536001.1:c.436T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*418T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*534T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.304T>C
  hgvsp: ENST00000560070.1:c.304T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13699T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*289T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.385T>C
  hgvsp: ENST00000558285.1:c.385T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.304T>C
  hgvsp: ENST00000540797.1:c.304T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453093
  ensembl transcript: ENST00000559771
  gene symbol: USP3
  hgvsc: ENST00000559771.1:c.370T>C
  hgvsp: ENST00000559771.1:c.370T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6161T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.436T>C
  hgvsp: ENST00000380324.3:c.436T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.370T>C
  hgvsp: ENST00000268049.7:c.370T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu146Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-63848951-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848951
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848951
    reference: chr 15
allele count: 3
allele frequency: 4.699395344465679e-5
allele num: 63838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.510T>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.318+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.450+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4876T>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*432+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.218+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.318+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.183+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*548+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13681A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.384+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*398+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.399+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*303+4A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6143A>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5410T>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6143A>C
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.450+4A>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

15-63848954-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848954
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848954
    reference: chr 15
allele count: 1
allele frequency: 1.639344262295082e-5
allele num: 61000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*398+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.218+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.318+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.183+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*548+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*303+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.318+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.450+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*432+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.399+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5413T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6140A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.384+7A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.507T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4879T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13678A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6140A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.450+7A>G
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

15-63848966-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848966
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848966
    reference: chr 15
allele count: 1
allele frequency: 2.279981760145919e-5
allele num: 43860
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.450+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6128T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*432+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.495A>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.318+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.183+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.384+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*303+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*398+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13666T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.318+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4891A>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.399+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6128T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*548+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.218+19T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5425A>C
  variant of: http://identifiers.org/hgnc/44140
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-63848973-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848973
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848973
    reference: chr 15
allele count: 2
allele frequency: 5.353892279687333e-5
allele num: 37356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13659A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4898T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*432+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.488T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5432T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.183+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.218+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.318+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.318+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.399+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*548+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6121A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.450+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*398+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6121A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*303+26A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.384+26A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

15-63848976-AGAGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848976
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848972
    reference: chr 15
allele count: 1
allele frequency: 2.842524161455372e-5
allele num: 35180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6117_176-6114delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.384+30_384+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13655_92-13652delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.450+30_450+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.183+30_183+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.399+30_399+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5439_227-5436delACTC
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*303+30_*303+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*432+30_*432+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4905_228-4902delACTC
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6117_-100-6114delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*398+30_*398+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.318+30_318+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.481_484delACTC
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*548+30_*548+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+30_450+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.318+30_318+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.218+30_218+33delGAGT
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: AGAGT
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-63848994-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63848994
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63848994
    reference: chr 15
allele count: 1
allele frequency: 3.59505320678746e-5
allele num: 27816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*548+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*398+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.218+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.183+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*303+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.318+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.318+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-4919T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-5453T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.450+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.467T>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-6100A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-6100A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-13638A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*432+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.384+47A>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.399+47A>G
  variant of: http://identifiers.org/hgnc/12626
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

15-63850255-GTTGGCCTTCCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850255
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850244
    reference: chr 15
allele count: 9
allele frequency: 7.427581084426839e-5
allele num: 121170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: GTTGGCCTTCCC
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

15-63850258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850258
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850258
    reference: chr 15
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*433-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*549-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4836G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6717C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.451-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.184-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1080C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.400-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.319-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.319-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4836G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12374G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.219-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*304-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.385-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6183C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*399-47G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1311G>A
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

15-63850260-C-CCTTCCCTTGGCATTACTGATGGCCTCTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850260
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850289
    reference: chr 15
allele count: 6
allele frequency: 4.951148666490626e-5
allele num: 121184
alternate allele: CCTTCCCTTGGCATTACTGATGGCCTCTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15617
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-63850271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850271
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850271
    reference: chr 15
allele count: 21
allele frequency: 1.731616010026881e-4
allele num: 121274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4823C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*433-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12361C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.451-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.385-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*549-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*399-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.400-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.319-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.319-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.219-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6196G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4823C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.184-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*304-34C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1093G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1324C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6730G>A
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

15-63850276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850276
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850276
    reference: chr 15
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1329C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.400-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6201G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.451-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.184-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.319-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*433-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1098G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4818C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12356C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6735G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4818C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.319-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.385-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*399-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*304-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.219-29C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*549-29C>T
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

15-63850281-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850281
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850281
    reference: chr 15
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.400-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1334G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1103C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*549-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*433-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*399-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4813G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.319-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.184-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.219-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.451-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6206C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6740C>T
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12351G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*304-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.385-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.319-24G>A
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4813G>A
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

15-63850283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850283
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850283
    reference: chr 15
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*399-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*433-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.219-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*304-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.184-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*549-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.385-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4811C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1336C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1105G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4811C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6742G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6208G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.400-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.451-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12349C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.319-22C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.319-22C>T
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-63850288-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850288
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850288
    reference: chr 15
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*399-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*433-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4806T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.385-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.319-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12344T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4806T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*549-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.319-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1110A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.400-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6213A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6747A>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.451-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1341T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.219-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.184-17T>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*304-17T>C
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

15-63850309-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850309
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850309
    reference: chr 15
allele count: 4
allele frequency: 3.295327225993541e-5
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.389G>C
  hgvsp: ENSP00000268049.7:p.Ser130Thr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1131C>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6234C>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.188G>C
  hgvsp: ENSP00000453138.1:p.Ser63Thr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1362G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*553G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.404G>C
  hgvsp: ENSP00000453619.1:p.Ser135Thr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*308G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*403G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.455G>C
  hgvsp: ENSP00000369681.3:p.Ser152Thr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.323G>C
  hgvsp: ENSP00000453194.1:p.Ser108Thr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4785G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12323G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.223G>C
  hgvsp: ENSP00000452947.1:p.Ser75Thr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.323G>C
  hgvsp: ENSP00000445828.1:p.Ser108Thr
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6768C>G
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4785G>C
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*437G>C
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser152Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-63850328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850328
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850328
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4766C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*456C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*572C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.207C>T
  hgvsp: ENST00000559711.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.242C>T
  hgvsp: ENST00000559257.1:c.242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.408C>T
  hgvsp: ENST00000268049.7:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1381C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.342C>T
  hgvsp: ENST00000540797.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6253G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4766C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.423C>T
  hgvsp: ENST00000558285.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6787G>A
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*422C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*327C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.342C>T
  hgvsp: ENST00000560070.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12304C>T
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.474C>T
  hgvsp: ENST00000380324.3:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1150G>A
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala158Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

15-63850336-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850336
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850336
    reference: chr 15
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000369681
  ensembl transcript: ENST00000380324
  gene symbol: USP3
  hgvsc: ENST00000380324.3:c.482T>G
  hgvsp: ENSP00000369681.3:p.Leu161Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453619
  ensembl transcript: ENST00000558285
  gene symbol: USP3
  hgvsc: ENST00000558285.1:c.431T>G
  hgvsp: ENSP00000453619.1:p.Leu144Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.250T>G
  hgvsp: ENSP00000452947.1:p.Leu84Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000560350
  gene symbol: USP3-AS1
  hgvsc: ENST00000560350.1:n.227-6795A>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559357
  gene symbol: USP3-AS1
  hgvsc: ENST00000559357.1:n.228-6261A>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445642
  ensembl transcript: ENST00000539772
  gene symbol: USP3
  hgvsc: ENST00000539772.1:c.-100-4758T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.416T>G
  hgvsp: ENSP00000268049.7:p.Leu139Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453194
  ensembl transcript: ENST00000560070
  gene symbol: USP3
  hgvsc: ENST00000560070.1:c.350T>G
  hgvsp: ENSP00000453194.1:p.Leu117Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453228
  ensembl transcript: ENST00000559192
  gene symbol: USP3
  hgvsc: ENST00000559192.1:c.*430T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000454043
  ensembl transcript: ENST00000557884
  gene symbol: USP3
  hgvsc: ENST00000557884.1:c.*580T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445828
  ensembl transcript: ENST00000540797
  gene symbol: USP3
  hgvsc: ENST00000540797.1:c.350T>G
  hgvsp: ENSP00000445828.1:p.Leu117Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445793
  ensembl transcript: ENST00000538686
  gene symbol: USP3
  hgvsc: ENST00000538686.2:c.*335T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453138
  ensembl transcript: ENST00000559711
  gene symbol: USP3
  hgvsc: ENST00000559711.1:c.215T>G
  hgvsp: ENSP00000453138.1:p.Leu72Arg
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000445615
  ensembl transcript: ENST00000536001
  gene symbol: USP3
  hgvsc: ENST00000536001.1:c.450+1389T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1158A>C
  variant of: http://identifiers.org/hgnc/44140
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452929
  ensembl transcript: ENST00000558157
  gene symbol: USP3
  hgvsc: ENST00000558157.1:c.*464T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000453767
  ensembl transcript: ENST00000559873
  gene symbol: USP3
  hgvsc: ENST00000559873.1:c.92-12296T>G
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140455
  ensembl transcript: ENST00000561326
  gene symbol: USP3
  hgvsc: ENST00000561326.1:n.176-4758T>G
  variant of: http://identifiers.org/hgnc/12626
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu161Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-63850344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63850344
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 63850344
    reference: chr 15
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000452947
  ensembl transcript: ENST00000559257
  gene symbol: USP3
  hgvsc: ENST00000559257.1:c.258T>C
  hgvsp: ENST00000559257.1:c.258T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140455
  ensembl protein: ENSP00000268049
  ensembl transcript: ENST00000268049
  gene symbol: USP3
  hgvsc: ENST00000268049.7:c.424T>C
  hgvsp: ENST00000268049.7:c.424T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12626
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259248
  ensembl transcript: ENST00000559861
  gene symbol: USP3-AS1
  hgvsc: ENST00000559861.1:n.283-1166A>G
  variant of: http://identifiers.org/hgnc/44140
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Leu164Leu
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 214
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 490
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1085
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 137
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 554
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 474
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 172
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3202
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3597
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.359475544545482e-4
allele num: 66202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.547766e6

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.533e0

FS
type: SiteQuality
SIO_000300: 5.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.036e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 190
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 510
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38338
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 137
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1099
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 772
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 389
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4871
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510893542441e-5
allele num: 66186
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.198090987975704e-5
allele num: 16134
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 3.21e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
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SIO_000300: 4.716e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
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SIO_000300: -1.301e0

ReadPosRankSum
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SIO_000300: 7.94e-1

DP
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SIO_000300: 1.545415e6

QD
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SIO_000300: 1.469e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15912
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514967882680887e-5
allele num: 66008
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 3.39e0

QD
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SIO_000300: 1.438e1

DP
type: SiteQuality
SIO_000300: 1.530443e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
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allele count: 7
allele frequency: 6.811989100817438e-4
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

ReadPosRankSum
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SIO_000300: -1.1e-2

FS
type: SiteQuality
SIO_000300: 3.018e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
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SIO_000300: -4.83e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

DP
type: SiteQuality
SIO_000300: 1.516869e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65666
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 6.18e-1

ClippingRankSum
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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DP
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SIO_000300: 1.490196e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65546
num of homozygotes: 0

Other
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East Asian
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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VQSLOD
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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Latino
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African
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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MQ
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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African
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East Asian
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South Asian
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MQ
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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East Asian
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VQSLOD
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DP
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QD
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MQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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East Asian
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South Asian
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VQSLOD
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MQ
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European (Finnish)
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European (Finnish)
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South Asian
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allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.55076e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.084e0

FS
type: SiteQuality
SIO_000300: 9.84e0

QD
type: SiteQuality
SIO_000300: 9.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.77e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeDepth
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2488
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 335
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1486
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 169
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1052
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1659
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.334757074212493e-4
allele num: 7492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.55e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.599e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 1.707e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 1.53697e5

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000259248
ensembl transcript: ENST00000560067
gene symbol: USP3-AS1
hgvsc: ENST00000560067.1:n.181-1797G>A
variant of: http://identifiers.org/hgnc/44140

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12343
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 597
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7258
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1732
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4685
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 989
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1724
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8105
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 344
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20117
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 768
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4043
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.439979392065946e-5
allele num: 15528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e0

DP
type: SiteQuality
SIO_000300: 1.523358e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000140455
ensembl protein: ENSP00000268049
ensembl transcript: ENST00000268049
gene symbol: USP3
hgvsc: ENST00000268049.7:c.219-24C>T
variant of: http://identifiers.org/hgnc/12626

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 768
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1764
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15095
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 999
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1035
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 827
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2075
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29978
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 345
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5240
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4253
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 173
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.347417840375587e-4
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.724e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.55e-1

FS
type: SiteQuality
SIO_000300: 5.027e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.63958e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.09e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000140455
ensembl protein: ENSP00000268049
ensembl transcript: ENST00000268049
gene symbol: USP3
hgvsc: ENST00000268049.7:c.219-12T>C
variant of: http://identifiers.org/hgnc/12626

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 617
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 996
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31799
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15869
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5293
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 515
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 345
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 771
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1757
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4254
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.233197681588359e-4
allele num: 16218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

FS
type: SiteQuality
SIO_000300: 2.784e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.669558e6

QD
type: SiteQuality
SIO_000300: 1.387e1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000140455
ensembl protein: ENSP00000453228
ensembl transcript: ENST00000559192
gene symbol: USP3
hgvsc: ENST00000559192.1:c.*233-4G>C
variant of: http://identifiers.org/hgnc/12626

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000259248
ensembl transcript: ENST00000560067
gene symbol: USP3-AS1
hgvsc: ENST00000560067.1:n.181-1835C>G
variant of: http://identifiers.org/hgnc/44140

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32053
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 293
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 16197
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 998
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 449
bin: 5.75e1
variant carriers: 3

GenotypeDepth
all individuals: 600
bin: 5.25e1
variant carriers: 6

GenotypeDepth
all individuals: 5354
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 269
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 351
bin: 6.25e1
variant carriers: 6

GenotypeDepth
all individuals: 265
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1760
bin: 3.75e1
variant carriers: 5

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 605
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 86
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 776
bin: 4.75e1
variant carriers: 7

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73550850399167e-4
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 3.468208092485549e-3
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.264e0

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

DP
type: SiteQuality
SIO_000300: 1.680397e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000140455
ensembl protein: ENSP00000453228
ensembl transcript: ENST00000559192
gene symbol: USP3
hgvsc: ENST00000559192.1:c.*238G>A
variant of: http://identifiers.org/hgnc/12626

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000140455
ensembl transcript: ENST00000558925
gene symbol: USP3
hgvsc: ENST00000558925.1:n.388G>A
variant of: http://identifiers.org/hgnc/12626

GenotypeDepth
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5390
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 993
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 172
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 32133
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1759
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16418
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4253
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6162
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005801196308876e-5
allele num: 66538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

FS
type: SiteQuality
SIO_000300: 2.909e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.391e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 1.684312e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000140455
ensembl protein: ENSP00000452947
ensembl transcript: ENST00000559257
gene symbol: USP3
hgvsc: ENST00000559257.1:c.58G>T
hgvsp: ENSP00000452947.1:p.Arg20Leu
variant of: http://identifiers.org/hgnc/12626

GenotypeDepth
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32133
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 172
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 993
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5390
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16418
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1759
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4253
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.909e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.391e1

DP
type: SiteQuality
SIO_000300: 1.684312e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000259248
ensembl transcript: ENST00000559357
gene symbol: USP3-AS1
hgvsc: ENST00000559357.1:n.228-1861C>T
variant of: http://identifiers.org/hgnc/44140

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 993
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32138
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5397
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16548
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 447
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1755
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4251
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: -1.107e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 1.686847e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.583e0

QD
type: SiteQuality
SIO_000300: 1.211e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.971e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.868000000000001e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000259248
ensembl transcript: ENST00000560350
gene symbol: USP3-AS1
hgvsc: ENST00000560350.1:n.227-2407T>G
variant of: http://identifiers.org/hgnc/44140

GenotypeDepth
all individuals: 1753
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 993
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32122
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 447
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16592
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5390
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4251
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.821e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

DP
type: SiteQuality
SIO_000300: 1.687054e6

QD
type: SiteQuality
SIO_000300: 5.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeDepth
all individuals: 447
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32075
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5397
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 992
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16605
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1757
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6179
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4251
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.687062e6

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

QD
type: SiteQuality
SIO_000300: 1.214e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.373e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.57e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000140455
ensembl transcript: ENST00000561326
gene symbol: USP3
hgvsc: ENST00000561326.1:n.176-9128A>C
variant of: http://identifiers.org/hgnc/12626

GenotypeDepth
all individuals: 16626
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31986
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5392
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 992
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1755
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4252
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6171
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.0148e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.579e1

VQSLOD
type: SiteQuality
SIO_000300: -1.245e0

DP
type: SiteQuality
SIO_000300: 1.686294e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.305e0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 768
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 268
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 995
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1755
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 447
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5389
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16612
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31844
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4253
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.428658166363084e-4
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.852e0

DP
type: SiteQuality
SIO_000300: 1.684684e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

FS
type: SiteQuality
SIO_000300: 1.465e0

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

QD
type: SiteQuality
SIO_000300: 9.59e0

GenotypeDepth
all individuals: 274
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16577
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5379
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1754
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 992
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 296
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 447
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31666
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
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variant carriers: 0

GenotypeDepth
all individuals: 603
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variant carriers: 1

GenotypeDepth
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
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variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4250
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.327e1

MQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.676e0

DP
type: SiteQuality
SIO_000300: 1.681882e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.481e0

FS
type: SiteQuality
SIO_000300: 7.87e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.417e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

GenotypeDepth
all individuals: 770
bin: 4.75e1
variant carriers: 5

GenotypeDepth
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16295
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 604
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 346
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2005
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29203
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1750
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 658
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5322
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 452
bin: 5.75e1
variant carriers: 5

GenotypeDepth
all individuals: 1001
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 763
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 5.25e1
variant carriers: 3

GenotypeDepth
all individuals: 268
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 207
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4270
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-4
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.782821365681862e-5
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.644979041370512e-4
allele num: 65844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.439e0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

DP
type: SiteQuality
SIO_000300: 1.653874e6

QD
type: SiteQuality
SIO_000300: 1.193e1

GenotypeDepth
all individuals: 6332
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 447
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5175
bin: 3.25e1
variant carriers: 4

GenotypeDepth
all individuals: 770
bin: 4.75e1
variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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European (Non-Finnish)
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East Asian
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South Asian
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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FS
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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South Asian
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African
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Latino
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European (Non-Finnish)
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DP
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InbreedingCoeff
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QD
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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FS
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4795
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variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3690
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

DP
type: SiteQuality
SIO_000300: 6.60236e5

MQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeDepth
all individuals: 25652
bin: 7.5e0
variant carriers: 4

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 83
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 63
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5550
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1255
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variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.989812161731933e-4
allele num: 25128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

QD
type: SiteQuality
SIO_000300: 1.369e1

DP
type: SiteQuality
SIO_000300: 6.69342e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeDepth
all individuals: 26100
bin: 7.5e0
variant carriers: 1

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 31
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variant carriers: 0

GenotypeDepth
all individuals: 433
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 859
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 264
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variant carriers: 0

GenotypeDepth
all individuals: 180
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variant carriers: 0

GenotypeDepth
all individuals: 101
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variant carriers: 0

GenotypeDepth
all individuals: 32
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variant carriers: 0

GenotypeDepth
all individuals: 23
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variant carriers: 0

GenotypeDepth
all individuals: 83
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variant carriers: 0

GenotypeDepth
all individuals: 35
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variant carriers: 0

GenotypeDepth
all individuals: 63
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variant carriers: 0

GenotypeDepth
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 1178
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variant carriers: 0

GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 268
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 3596
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variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 366
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3978
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variant carriers: 0

GenotypeQuality
all individuals: 20596
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variant carriers: 0

GenotypeQuality
all individuals: 251
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4306
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variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.291322314049587e-4
allele num: 7744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25344
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

DP
type: SiteQuality
SIO_000300: 6.812e5

QD
type: SiteQuality
SIO_000300: 1.155e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeDepth
all individuals: 2288
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1389
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 32
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12824
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 902
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variant carriers: 0

GenotypeDepth
all individuals: 3776
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variant carriers: 0

GenotypeDepth
all individuals: 23
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variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27775
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variant carriers: 0

GenotypeDepth
all individuals: 101
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variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10079
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variant carriers: 0

GenotypeDepth
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
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variant carriers: 0

GenotypeDepth
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 758
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 27154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.124606387764283e-4
allele num: 8892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.096e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 8.13653e5

FS
type: SiteQuality
SIO_000300: 3.485e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeDepth
all individuals: 2374
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9444
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 14067
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1360
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 142
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3442
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 928
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27433
bin: 7.5e0
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GenotypeQuality
all individuals: 14998
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26940
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3628
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.17296827466319e-4
allele num: 4602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

DP
type: SiteQuality
SIO_000300: 8.31915e5

FS
type: SiteQuality
SIO_000300: 3.424e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

QD
type: SiteQuality
SIO_000300: 1.004e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQ
type: SiteQuality
SIO_000300: 5.592e1

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000140455
ensembl protein: ENSP00000268049
ensembl transcript: ENST00000268049
gene symbol: USP3
hgvsc: ENST00000268049.7:c.303-6T>C
variant of: http://identifiers.org/hgnc/12626

GenotypeDepth
all individuals: 23351
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 35
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 436
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 998
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 992
bin: 1.75e1
variant carriers: 8

GenotypeDepth
all individuals: 83
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22858
bin: 2.25e1
variant carriers: 7

GenotypeDepth
all individuals: 108
bin: 5.25e1
variant carriers: 1

GenotypeDepth
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GenotypeQuality
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European (Finnish)
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African
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QD
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FS
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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South Asian
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MQ
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QD
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FS
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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East Asian
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African
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BaseQRankSum
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VQSLOD
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MQ
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FS
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DP
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MQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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VQSLOD
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DP
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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FS
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QD
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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Latino
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African
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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QD
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MQ
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FS
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DP
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InbreedingCoeff
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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South Asian
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VQSLOD
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FS
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MQ
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Other
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African
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Latino
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South Asian
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European (Non-Finnish)
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DP
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.094570928196147e-4
allele num: 18272
num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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MQ
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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allele frequency: 0.0e0
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.815982319413749e-5
allele num: 17194
num of homozygotes: 0

MQ
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ClippingRankSum
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DP
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 7.461572899567229e-5
allele num: 13402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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SIO_000300: -1.89e-1

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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allele frequency: 1.043599257884972e-3
allele num: 8624
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South Asian
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BaseQRankSum
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DP
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VQSLOD
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Latino
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Other
type: Population
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African
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allele frequency: 9.619084263178146e-5
allele num: 10396
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DP
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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South Asian
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African
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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MQRankSum
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DP
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SIO_000300: 2.095926e6

FS
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SIO_000300: 1.0779e1

MQ
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
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SIO_000300: 2.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 20

Other
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num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.092100473243538e-3
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European (Non-Finnish)
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allele num: 66664
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
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FS
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InbreedingCoeff
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SIO_000300: 4.0e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Other
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 4.49e-1

ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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SIO_000300: 2.109889e6

MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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African
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European (Non-Finnish)
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 2.312673450508788e-4
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Latino
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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African
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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DP
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MQ
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 776
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variant carriers: 0

GenotypeDepth
all individuals: 192
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variant carriers: 0

GenotypeDepth
all individuals: 252
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variant carriers: 0

GenotypeDepth
all individuals: 331
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variant carriers: 0

GenotypeDepth
all individuals: 375
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variant carriers: 1

GenotypeQuality
all individuals: 4908
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11610
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24184
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.339e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.453e0

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

DP
type: SiteQuality
SIO_000300: 2.113286e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

GenotypeDepth
all individuals: 16381
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2868
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 776
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4842
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 331
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 499
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14549
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 424
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variant carriers: 0

GenotypeDepth
all individuals: 1724
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7776
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4911
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11606
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2933
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.101e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

DP
type: SiteQuality
SIO_000300: 2.113415e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 2.751e0

QD
type: SiteQuality
SIO_000300: 1.148e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.53e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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bin: 5.75e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2868
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1724
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variant carriers: 0

GenotypeDepth
all individuals: 499
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11606
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.182e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.633e0

FS
type: SiteQuality
SIO_000300: 2.392e0

DP
type: SiteQuality
SIO_000300: 2.113384e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4