9-16583010-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583010
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583010
    reference: chr 9
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.203A>G
  hgvsp: ENSP00000370042.1:p.Asp68Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.275A>G
  hgvsp: ENSP00000408370.1:p.Asp92Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.404A>G
  hgvsp: ENSP00000370041.2:p.Asp135Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.77A>G
  hgvsp: ENSP00000474832.1:p.Asp26Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.404A>G
  hgvsp: ENSP00000370047.3:p.Asp135Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.278A>G
  hgvsp: ENSP00000474647.1:p.Asp93Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.119A>G
  hgvsp: ENSP00000444640.1:p.Asp40Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.404A>G
  hgvsp: ENSP00000431516.1:p.Asp135Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.170A>G
  hgvsp: ENSP00000474045.1:p.Asp57Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.170A>G
  hgvsp: ENSP00000473935.1:p.Asp57Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.275A>G
  hgvsp: ENSP00000474468.1:p.Asp92Gly
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp135Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

9-16583015-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583015
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583015
    reference: chr 9
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.399T>C
  hgvsp: ENST00000484726.1:c.399T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.165T>C
  hgvsp: ENST00000603713.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.72T>C
  hgvsp: ENST00000471301.2:c.72T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.198T>C
  hgvsp: ENST00000380667.2:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.270T>C
  hgvsp: ENST00000418777.1:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.165T>C
  hgvsp: ENST00000603313.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.273T>C
  hgvsp: ENST00000486514.1:c.273T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.114T>C
  hgvsp: ENST00000545497.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.399T>C
  hgvsp: ENST00000380666.2:c.399T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.399T>C
  hgvsp: ENST00000380672.4:c.399T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.270T>C
  hgvsp: ENST00000468187.2:c.270T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr133Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

9-16583027-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583027
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583027
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.258T>C
  hgvsp: ENST00000418777.1:c.258T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.186T>C
  hgvsp: ENST00000380667.2:c.186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.60T>C
  hgvsp: ENST00000471301.2:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.387T>C
  hgvsp: ENST00000380672.4:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.387T>C
  hgvsp: ENST00000380666.2:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.153T>C
  hgvsp: ENST00000603313.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.387T>C
  hgvsp: ENST00000484726.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.261T>C
  hgvsp: ENST00000486514.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.153T>C
  hgvsp: ENST00000603713.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.258T>C
  hgvsp: ENST00000468187.2:c.258T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.102T>C
  hgvsp: ENST00000545497.1:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile129Ile
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

9-16583031-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583031
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583031
    reference: chr 9
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.254A>C
  hgvsp: ENSP00000408370.1:p.Lys85Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.98A>C
  hgvsp: ENSP00000444640.1:p.Lys33Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.149A>C
  hgvsp: ENSP00000473935.1:p.Lys50Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.182A>C
  hgvsp: ENSP00000370042.1:p.Lys61Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.254A>C
  hgvsp: ENSP00000474468.1:p.Lys85Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.383A>C
  hgvsp: ENSP00000431516.1:p.Lys128Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.257A>C
  hgvsp: ENSP00000474647.1:p.Lys86Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.383A>C
  hgvsp: ENSP00000370041.2:p.Lys128Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.149A>C
  hgvsp: ENSP00000474045.1:p.Lys50Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.383A>C
  hgvsp: ENSP00000370047.3:p.Lys128Thr
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.56A>C
  hgvsp: ENSP00000474832.1:p.Lys19Thr
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10572
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys128Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-16583039-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583039
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583039
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.141G>A
  hgvsp: ENST00000603713.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.90G>A
  hgvsp: ENST00000545497.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.174G>A
  hgvsp: ENST00000380667.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.375G>A
  hgvsp: ENST00000380672.4:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.249G>A
  hgvsp: ENST00000486514.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.246G>A
  hgvsp: ENST00000418777.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.141G>A
  hgvsp: ENST00000603313.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.375G>A
  hgvsp: ENST00000484726.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.375G>A
  hgvsp: ENST00000380666.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.246G>A
  hgvsp: ENST00000468187.2:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.48G>A
  hgvsp: ENST00000471301.2:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln125Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

9-16583054-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583054
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583054
    reference: chr 9
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.360A>G
  hgvsp: ENST00000380672.4:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.126A>G
  hgvsp: ENST00000603713.1:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.234A>G
  hgvsp: ENST00000486514.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.360A>G
  hgvsp: ENST00000484726.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.159A>G
  hgvsp: ENST00000380667.2:c.159A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.33A>G
  hgvsp: ENST00000471301.2:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.360A>G
  hgvsp: ENST00000380666.2:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.231A>G
  hgvsp: ENST00000468187.2:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.126A>G
  hgvsp: ENST00000603313.1:c.126A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.75A>G
  hgvsp: ENST00000545497.1:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.231A>G
  hgvsp: ENST00000418777.1:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15371
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr120Thr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

9-16583054-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583054
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583054
    reference: chr 9
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.126A>C
  hgvsp: ENST00000603713.1:c.126A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.234A>C
  hgvsp: ENST00000486514.1:c.234A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.231A>C
  hgvsp: ENST00000468187.2:c.231A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.360A>C
  hgvsp: ENST00000380672.4:c.360A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.159A>C
  hgvsp: ENST00000380667.2:c.159A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.231A>C
  hgvsp: ENST00000418777.1:c.231A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.75A>C
  hgvsp: ENST00000545497.1:c.75A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.126A>C
  hgvsp: ENST00000603313.1:c.126A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.33A>C
  hgvsp: ENST00000471301.2:c.33A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.360A>C
  hgvsp: ENST00000380666.2:c.360A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.360A>C
  hgvsp: ENST00000484726.1:c.360A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr120Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-16583056-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583056
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583056
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.124A>G
  hgvsp: ENSP00000474045.1:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.358A>G
  hgvsp: ENSP00000370047.3:p.Thr120Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.358A>G
  hgvsp: ENSP00000370041.2:p.Thr120Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.124A>G
  hgvsp: ENSP00000473935.1:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.232A>G
  hgvsp: ENSP00000474647.1:p.Thr78Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.31A>G
  hgvsp: ENSP00000474832.1:p.Thr11Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.73A>G
  hgvsp: ENSP00000444640.1:p.Thr25Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.358A>G
  hgvsp: ENSP00000431516.1:p.Thr120Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.229A>G
  hgvsp: ENSP00000474468.1:p.Thr77Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.157A>G
  hgvsp: ENSP00000370042.1:p.Thr53Ala
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.229A>G
  hgvsp: ENSP00000408370.1:p.Thr77Ala
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr120Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

9-16583061-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583061
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583061
    reference: chr 9
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.353A>G
  hgvsp: ENSP00000431516.1:p.Asn118Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.224A>G
  hgvsp: ENSP00000408370.1:p.Asn75Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.152A>G
  hgvsp: ENSP00000370042.1:p.Asn51Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.26A>G
  hgvsp: ENSP00000474832.1:p.Asn9Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.353A>G
  hgvsp: ENSP00000370047.3:p.Asn118Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.119A>G
  hgvsp: ENSP00000473935.1:p.Asn40Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.227A>G
  hgvsp: ENSP00000474647.1:p.Asn76Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.68A>G
  hgvsp: ENSP00000444640.1:p.Asn23Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.119A>G
  hgvsp: ENSP00000474045.1:p.Asn40Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.353A>G
  hgvsp: ENSP00000370041.2:p.Asn118Ser
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.224A>G
  hgvsp: ENSP00000474468.1:p.Asn75Ser
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn118Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

9-16583070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583070
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583070
    reference: chr 9
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.143C>T
  hgvsp: ENSP00000370042.1:p.Thr48Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.218C>T
  hgvsp: ENSP00000474647.1:p.Thr73Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.110C>T
  hgvsp: ENSP00000473935.1:p.Thr37Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.344C>T
  hgvsp: ENSP00000370041.2:p.Thr115Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.59C>T
  hgvsp: ENSP00000444640.1:p.Thr20Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.110C>T
  hgvsp: ENSP00000474045.1:p.Thr37Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.344C>T
  hgvsp: ENSP00000370047.3:p.Thr115Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.215C>T
  hgvsp: ENSP00000408370.1:p.Thr72Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.344C>T
  hgvsp: ENSP00000431516.1:p.Thr115Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.215C>T
  hgvsp: ENSP00000474468.1:p.Thr72Ile
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.17C>T
  hgvsp: ENSP00000474832.1:p.Thr6Ile
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr115Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

9-16583082-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583082
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583082
    reference: chr 9
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.332C>G
  hgvsp: ENSP00000431516.1:p.Ala111Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.332C>G
  hgvsp: ENSP00000370047.3:p.Ala111Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.206C>G
  hgvsp: ENSP00000474647.1:p.Ala69Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.98C>G
  hgvsp: ENSP00000474045.1:p.Ala33Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.203C>G
  hgvsp: ENSP00000474468.1:p.Ala68Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.47C>G
  hgvsp: ENSP00000444640.1:p.Ala16Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.98C>G
  hgvsp: ENSP00000473935.1:p.Ala33Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.5C>G
  hgvsp: ENSP00000474832.1:p.Ala2Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.203C>G
  hgvsp: ENSP00000408370.1:p.Ala68Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.131C>G
  hgvsp: ENSP00000370042.1:p.Ala44Gly
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.332C>G
  hgvsp: ENSP00000370041.2:p.Ala111Gly
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala111Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

9-16583097-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583097
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583097
    reference: chr 9
allele count: 3
allele frequency: 2.477209671026556e-5
allele num: 121104
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.331-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.331-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.97-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.331-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.205-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.4-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.202-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.202-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.97-14C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.130-14C>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

9-16583101-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583101
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583101
    reference: chr 9
allele count: 2
allele frequency: 1.652947204866277e-5
allele num: 120996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.205-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.202-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.97-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.130-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.331-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.202-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.331-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.331-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.97-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-18T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.4-18T>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5473
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

9-16583112-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583112
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583112
    reference: chr 9
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.331-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.130-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.202-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.205-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.4-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.331-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.97-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.202-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.331-29T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.97-29T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-16583114-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583114
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583114
    reference: chr 9
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.331-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.4-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.202-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.97-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.205-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.202-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.331-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.97-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.130-31G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.331-31G>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

9-16583115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583115
    reference: chr 9
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.97-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.331-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.4-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.130-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.205-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.202-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.202-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.97-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.331-32T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.331-32T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/9-16583117-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583117
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583117
    reference: chr 9
allele count: 1
allele frequency: 8.29228651508367e-6
allele num: 120594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.130-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.202-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.205-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.331-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.97-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.4-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.331-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.202-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.97-34G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.331-34G>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

9-16583120-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583120
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583120
    reference: chr 9
allele count: 1
allele frequency: 8.300683976359652e-6
allele num: 120472
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.331-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.130-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.331-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.202-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.97-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.97-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.331-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.205-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.202-37A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.4-37A>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4071
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

9-16583128-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16583128
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16583128
    reference: chr 9
allele count: 1
allele frequency: 8.332500083325001e-6
allele num: 120012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.202-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.130-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.205-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.97-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.4-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.331-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.331-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.202-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.331-45A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.97-45A>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

9-16665044-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16665044
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16665044
    reference: chr 9
allele count: 1
allele frequency: 8.87941751021133e-5
allele num: 11262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+62751A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+62751A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+73314A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+62751A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+62751A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+39707A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+62751A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-81961A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+62751A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+62751A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+62751A>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

9-16665076-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16665076
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16665076
    reference: chr 9
allele count: 1
allele frequency: 9.004141905276428e-5
allele num: 11106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+62719C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+62719C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+62719C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+62719C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+62719C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+62719C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+62719C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+73282C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-81993C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+62719C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+39675C>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

9-16665089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16665089
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16665089
    reference: chr 9
allele count: 5
allele frequency: 4.597278411180581e-4
allele num: 10876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+39662C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+62706C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+73269C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-82006C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+62706C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+62706C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+62706C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+62706C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+62706C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+62706C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+62706C>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

9-16665110-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16665110
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16665110
    reference: chr 9
allele count: 6
allele frequency: 5.793742757821553e-4
allele num: 10356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+62685A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-82027A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+39641A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+62685A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+62685A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+62685A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+73248A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+62685A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+62685A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+62685A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+62685A>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

9-16665114-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16665114
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16665114
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 10184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+39637G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+62681G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+62681G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+73244G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+62681G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+62681G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-82031G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+62681G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+62681G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+62681G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+62681G>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

9-16665121-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16665121
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16665121
    reference: chr 9
allele count: 2
allele frequency: 2.06654267410622e-4
allele num: 9678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+62674G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+39630G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+62674G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+62674G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+62674G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+62674G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-82038G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+62674G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+73237G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+62674G>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+62674G>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-16665222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16665222
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16665222
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+62573C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+62573C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+62573C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-82139C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+62573C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+62573C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+73136C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+62573C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+62573C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+62573C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+39529C>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

9-16685510-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685510
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685510
    reference: chr 9
allele count: 4
allele frequency: 2.480466327669602e-4
allele num: 16126
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42285T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102427T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42285T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42285T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42285T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42285T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52848T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42285T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19241T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42285T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42285T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-16685517-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685517
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685517
    reference: chr 9
allele count: 4
allele frequency: 2.472187886279357e-4
allele num: 16180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102434C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42278C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42278C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52841C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42278C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42278C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42278C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19234C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42278C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42278C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42278C>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

9-16685532-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685532
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685532
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 16310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102449T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42263T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42263T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42263T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19219T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52826T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42263T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42263T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42263T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42263T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42263T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

9-16685536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685536
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685536
    reference: chr 9
allele count: 8
allele frequency: 4.898359049718344e-4
allele num: 16332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42259G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42259G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42259G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42259G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42259G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19215G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42259G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52822G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42259G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42259G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102453G>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-16685539-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685539
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685539
    reference: chr 9
allele count: 14041
allele frequency: 8.505573055488248e-1
allele num: 16508
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42256A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42256A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42256A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19212A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42256A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42256A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42256A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52819A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102456A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42256A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42256A>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.25e1
  variant carriers: 408
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 576
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.5e0
  variant carriers: 614
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 761
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 756
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 593
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.75e1
  variant carriers: 537
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.25e1
  variant carriers: 712
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.75e1
  variant carriers: 597
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 757
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 619
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 408
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 25
num of homozygotes: 6007
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

9-16685554-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685554
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685554
    reference: chr 9
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42241C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42241C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19197C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42241C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102471C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42241C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42241C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52804C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42241C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42241C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42241C>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

9-16685571-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685571
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685571
    reference: chr 9
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42224A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42224A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19180A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42224A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102488A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42224A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42224A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52787A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42224A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42224A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42224A>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

9-16685571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685571
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685571
    reference: chr 9
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42224A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42224A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42224A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42224A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102488A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42224A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42224A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52787A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19180A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42224A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42224A>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

9-16685576-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685576
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685576
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 16412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42219C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42219C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52782C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102493C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19175C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42219C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42219C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42219C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42219C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42219C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42219C>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

9-16685598-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685598
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685598
    reference: chr 9
allele count: 2
allele frequency: 1.221896383186706e-4
allele num: 16368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42197T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102515T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42197T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42197T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42197T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42197T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52760T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19153T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42197T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42197T>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42197T>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/9-16685608-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685608
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685608
    reference: chr 9
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42187G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42187G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42187G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52750G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42187G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102525G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42187G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42187G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42187G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42187G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19143G>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-16685613-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685613
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685613
    reference: chr 9
allele count: 1
allele frequency: 6.13195977434388e-5
allele num: 16308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42182G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42182G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52745G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102530G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42182G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42182G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42182G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42182G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19138G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42182G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42182G>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

9-16685629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685629
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685629
    reference: chr 9
allele count: 4
allele frequency: 2.464571780653111e-4
allele num: 16230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42166C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42166C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42166C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52729C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42166C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102546C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42166C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42166C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19122C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42166C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42166C>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

9-16685635-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685635
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685635
    reference: chr 9
allele count: 1
allele frequency: 6.171315724512466e-5
allele num: 16204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42160T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42160T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42160T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52723T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42160T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42160T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42160T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102552T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42160T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19116T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42160T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

9-16685637-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685637
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685637
    reference: chr 9
allele count: 3
allele frequency: 1.851851851851852e-4
allele num: 16200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102554T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42158T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42158T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42158T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42158T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52721T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42158T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42158T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42158T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19114T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42158T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

9-16685644-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685644
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685644
    reference: chr 9
allele count: 2
allele frequency: 1.237470610073011e-4
allele num: 16162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42151G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42151G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52714G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102561G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42151G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42151G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42151G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19107G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42151G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42151G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42151G>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

9-16685645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685645
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685645
    reference: chr 9
allele count: 2
allele frequency: 1.238390092879257e-4
allele num: 16150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42150C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42150C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42150C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102562C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42150C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19106C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42150C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42150C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42150C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52713C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42150C>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

9-16685649-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685649
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685649
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 16142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52709C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42146C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102566C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42146C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19102C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42146C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42146C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42146C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42146C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42146C>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42146C>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

9-16685658-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16685658
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16685658
    reference: chr 9
allele count: 1
allele frequency: 6.214267959234402e-5
allele num: 16092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+52700A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-102575A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42137A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42137A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+19093A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42137A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42137A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42137A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42137A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42137A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42137A>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS

9-16699143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16699143
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16699143
    reference: chr 9
allele count: 1
allele frequency: 6.279040562602035e-5
allele num: 15926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+28652G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+28652G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+28652G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+28652G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+39215G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+28652G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-116060G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+28652G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+5608G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+28652G>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+28652G>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

9-16699189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16699189
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16699189
    reference: chr 9
allele count: 1
allele frequency: 6.024822267743102e-5
allele num: 16598
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+28606C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+28606C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+28606C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+39169C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+28606C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+28606C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+28606C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-116106C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+28606C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+5562C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+28606C>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

9-16699226-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16699226
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16699226
    reference: chr 9
allele count: 10
allele frequency: 5.909466966079659e-4
allele num: 16922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+39132T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+28569T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+28569T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+5525T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+28569T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+28569T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+28569T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-116143T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+28569T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+28569T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+28569T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-16699227-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16699227
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16699227
    reference: chr 9
allele count: 8
allele frequency: 4.728132387706856e-4
allele num: 16920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+28568G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+28568G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+39131G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+28568G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+5524G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+28568G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+28568G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+28568G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+28568G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-116144G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+28568G>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/9-16699228-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16699228
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16699228
    reference: chr 9
allele count: 8
allele frequency: 4.731488052992666e-4
allele num: 16908
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+28567G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+28567G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+28567G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+28567G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+5523G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+28567G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-116145G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+28567G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+39130G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+28567G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+28567G>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-16699236-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16699236
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16699236
    reference: chr 9
allele count: 1
allele frequency: 5.913660555884092e-5
allele num: 16910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+28559A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+39122A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+28559A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+28559A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+28559A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+28559A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+28559A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+28559A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-116153A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+5515A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+28559A>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/9-16699241-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16699241
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16699240
    reference: chr 9
allele count: 8
allele frequency: 4.73260766682442e-4
allele num: 16904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+28553delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+28553delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+28553delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+5509delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+28553delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+28553delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+28553delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+39116delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-116159delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+28553delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+28553delT
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: CA
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

9-16704705-AGCCAGTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16704705
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16704698
    reference: chr 9
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.3+39_3+45delCACTGGC
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: AGCCAGTG
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-16704796-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16704796
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16704796
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 14
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+22999A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+22999A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+22999A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+22999A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.46-121713A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+22999A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+22999A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+33562A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+22999A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+22999A>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474832
  ensembl transcript: ENST00000471301
  gene symbol: BNC2
  hgvsc: ENST00000471301.2:c.-43A>T
  variant of: http://identifiers.org/hgnc/30988
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10072
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-16727744-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727744
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727744
    reference: chr 9
allele count: 1
allele frequency: 8.354358468813179e-6
allele num: 119698
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+51G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10614G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+51G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104498G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+51G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+51G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+51G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+51G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+51G>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+51G>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25288
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff

9-16727746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727746
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727746
    reference: chr 9
allele count: 1
allele frequency: 8.348917980229763e-6
allele num: 119776
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10612T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+49T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104496T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+49T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+49T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+49T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+49T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+49T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+49T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+49T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

9-16727748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727748
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727748
    reference: chr 9
allele count: 1
allele frequency: 8.345573507811457e-6
allele num: 119824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104494C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+47C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+47C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+47C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+47C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+47C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+47C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+47C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+47C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10610C>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

9-16727748-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727748
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727748
    reference: chr 9
allele count: 1
allele frequency: 8.345573507811457e-6
allele num: 119824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+47C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104494C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10610C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+47C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+47C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+47C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+47C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+47C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+47C>A
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+47C>A
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

9-16727752-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727752
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727753
    reference: chr 9
allele count: 2
allele frequency: 1.668279336692136e-5
allele num: 119884
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+42dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104489dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10605dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+42dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+42dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+42dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+42dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+42dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+42dupA
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+42dupA
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25321
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

9-16727754-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727754
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727755
    reference: chr 9
allele count: 20
allele frequency: 1.673500125512509e-4
allele num: 119510
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+40dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+40dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+40dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10603dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+40dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+40dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104487dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+40dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+40dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+40dupT
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25306
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

9-16727754-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727754
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727756
    reference: chr 9
allele count: 5
allele frequency: 4.183750313781274e-5
allele num: 119510
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+39_96+40dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104486_45+104487dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+39_201+40dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+39_330+40dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+39_330+40dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+39_330+40dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+39_204+40dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10602_129+10603dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+39_201+40dupTT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+39_96+40dupTT
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3810
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-16727763-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727763
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727764
    reference: chr 9
allele count: 477
allele frequency: 4.655293566520924e-3
allele num: 102464
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104478dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+31dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10594dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+31dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+31dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+31dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+31dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+31dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+31dupT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+31dupT
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 3.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 3.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 5.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 6.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 5704
  bin: 2.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5240
  bin: 6.25e1
  variant carriers: 4
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

9-16727763-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727763
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727762
    reference: chr 9
allele count: 509
allele frequency: 4.967598376014991e-3
allele num: 102464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+31delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+31delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+31delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+31delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+31delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+31delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104478delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+31delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10594delT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+31delT
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 7.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 5.25e1
  variant carriers: 6
num of homozygotes: 2
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: GA
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

9-16727768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727768
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727768
    reference: chr 9
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+27T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10590T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+27T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+27T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+27T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+27T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104474T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+27T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+27T>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+27T>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4219
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

9-16727771-AAATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727771
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727767
    reference: chr 9
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10583_129+10586delGATT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+20_96+23delGATT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+20_330+23delGATT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+20_201+23delGATT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+20_330+23delGATT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+20_201+23delGATT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+20_330+23delGATT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+20_204+23delGATT
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+20_96+23delGATT
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: AAATC
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

9-16727786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727786
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727786
    reference: chr 9
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10572C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+9C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+9C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+9C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+9C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+9C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+9C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+9C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+9C>T
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104456C>T
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29339
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

9-16727791-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727791
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727791
    reference: chr 9
allele count: 9
allele frequency: 7.412776331828814e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+4A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+4A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+4A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+4A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+4A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+4A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+4A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104451A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+4A>G
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10567A>G
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 8.75e1
  variant carriers: 0
hgvs: c.330+4A>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

9-16727791-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16727791
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 16727791
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000473935
  ensembl transcript: ENST00000603313
  gene symbol: BNC2
  hgvsc: ENST00000603313.1:c.96+4A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370041
  ensembl transcript: ENST00000380666
  gene symbol: BNC2
  hgvsc: ENST00000380666.2:c.330+4A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370047
  ensembl transcript: ENST00000380672
  gene symbol: BNC2
  hgvsc: ENST00000380672.4:c.330+4A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474647
  ensembl transcript: ENST00000486514
  gene symbol: BNC2
  hgvsc: ENST00000486514.1:c.204+4A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474045
  ensembl transcript: ENST00000603713
  gene symbol: BNC2
  hgvsc: ENST00000603713.1:c.96+4A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000431516
  ensembl transcript: ENST00000484726
  gene symbol: BNC2
  hgvsc: ENST00000484726.1:c.330+4A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000408370
  ensembl transcript: ENST00000418777
  gene symbol: BNC2
  hgvsc: ENST00000418777.1:c.201+4A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000370042
  ensembl transcript: ENST00000380667
  gene symbol: BNC2
  hgvsc: ENST00000380667.2:c.129+10567A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000474468
  ensembl transcript: ENST00000468187
  gene symbol: BNC2
  hgvsc: ENST00000468187.2:c.201+4A>C
  variant of: http://identifiers.org/hgnc/30988
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173068
  ensembl protein: ENSP00000444640
  ensembl transcript: ENST00000545497
  gene symbol: BNC2
  hgvsc: ENST00000545497.1:c.45+104451A>C
  variant of: http://identifiers.org/hgnc/30988
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7712
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: c.330+4A>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T

GenotypeDepth
all individuals: 10573
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1510
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12300
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 2.300524e6

FS
type: SiteQuality
SIO_000300: 4.762e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

QD
type: SiteQuality
SIO_000300: 1.204e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e0

GenotypeDepth
all individuals: 1510
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6936
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8634
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12299
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.417e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.73e-1

DP
type: SiteQuality
SIO_000300: 2.300773e6

GenotypeDepth
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8633
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 2.322e0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

DP
type: SiteQuality
SIO_000300: 2.300315e6

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeDepth
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19416
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4732
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12297
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4268
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.658e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 2.30023e6

QD
type: SiteQuality
SIO_000300: 2.38e0

GenotypeDepth
all individuals: 436
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12296
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.788e0

FS
type: SiteQuality
SIO_000300: 5.43e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e-1

DP
type: SiteQuality
SIO_000300: 2.300265e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

GenotypeDepth
all individuals: 879
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10569
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4732
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12295
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.300478e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.436e0

MQ
type: SiteQuality
SIO_000300: 5.865e1

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

GenotypeDepth
all individuals: 10569
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2483
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12295
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4732
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.865e1

VQSLOD
type: SiteQuality
SIO_000300: -2.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.436e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 2.300478e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeDepth
all individuals: 10570
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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Latino
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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African
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16508
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Other
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QD
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MQRankSum
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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African
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Other
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European (Finnish)
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East Asian
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QD
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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African
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Other
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European (Finnish)
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DP
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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MQRankSum
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SIO_000300: 1.38e-1

ClippingRankSum
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FS
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BaseQRankSum
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SIO_000300: -4.902e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.252586e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: 4.58e0

QD
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DP
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507159005275056e-5
allele num: 66350
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 904
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South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: 1.35e0

MQ
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SIO_000300: 5.967e1

BaseQRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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SIO_000300: 1.1e-3

ClippingRankSum
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DP
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SIO_000300: 2.240618e6

MQRankSum
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SIO_000300: -4.14e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
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DP
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.432e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513958699206686e-5
allele num: 66052
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.1836e6

ClippingRankSum
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 120
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Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 6.172839506172839e-3
allele num: 162
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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FS
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Other
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: NaN
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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East Asian
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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African
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East Asian
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ReadPosRankSum
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QD
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MQ
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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East Asian
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South Asian
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European (Finnish)
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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ReadPosRankSum
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FS
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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Other
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South Asian
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VQSLOD
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QD
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FS
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQ
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FS
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QD
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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FS
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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South Asian
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DP
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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Latino
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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QD
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African
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East Asian
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QD
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DP
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VQSLOD
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FS
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MQRankSum
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SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 59

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 44

GenotypeQuality
all individuals: 184
bin: 7.75e1
variant carriers: 165

GenotypeQuality
all individuals: 465
bin: 7.5e0
variant carriers: 409

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 19

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 14

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 116

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 74

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 176

GenotypeQuality
all individuals: 199
bin: 1.25e1
variant carriers: 199

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 40

GenotypeQuality
all individuals: 187
bin: 6.75e1
variant carriers: 148

GenotypeQuality
all individuals: 188
bin: 6.25e1
variant carriers: 121

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 164

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 24

GenotypeQuality
all individuals: 192
bin: 8.25e1
variant carriers: 168

GenotypeQuality
all individuals: 115
bin: 7.25e1
variant carriers: 92

GenotypeQuality
all individuals: 6854
bin: 9.75e1
variant carriers: 6822

Other
type: Population
allele count: 184
allele frequency: 8.932038834951457e-1
allele num: 206
num of homozygotes: 82

African
type: Population
allele count: 795
allele frequency: 8.774834437086093e-1
allele num: 906
num of homozygotes: 346

East Asian
type: Population
allele count: 433
allele frequency: 8.872950819672131e-1
allele num: 488
num of homozygotes: 190

South Asian
type: Population
allele count: 6018
allele frequency: 7.856396866840731e-1
allele num: 7660
num of homozygotes: 2373

European (Finnish)
type: Population
allele count: 1447
allele frequency: 8.976426799007444e-1
allele num: 1612
num of homozygotes: 652

Latino
type: Population
allele count: 266
allele frequency: 9.10958904109589e-1
allele num: 292
num of homozygotes: 121

European (Non-Finnish)
type: Population
allele count: 4898
allele frequency: 9.165419161676647e-1
allele num: 5344
num of homozygotes: 2243

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.046e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

DP
type: SiteQuality
SIO_000300: 4.32839e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.883948756593821e-4
allele num: 5308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.711e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.03e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.495e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.73493e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.905e0

QD
type: SiteQuality
SIO_000300: 6.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.444e0

VQSLOD
type: SiteQuality
SIO_000300: -1.002e2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.558e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.57e-2

FS
type: SiteQuality
SIO_000300: 1.47396e2

QD
type: SiteQuality
SIO_000300: 3.03e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

DP
type: SiteQuality
SIO_000300: 2.72075e5

GenotypeQuality
all individuals: 2603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.41025641025641e-4
allele num: 1560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.604e1

DP
type: SiteQuality
SIO_000300: 2.72075e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.558e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.444e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

FS
type: SiteQuality
SIO_000300: 1.47396e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

QD
type: SiteQuality
SIO_000300: 3.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.002e2

GenotypeQuality
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.852e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 2.71727e5

QD
type: SiteQuality
SIO_000300: 1.242e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

GenotypeQuality
all individuals: 170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1683
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.277904328018223e-3
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

FS
type: SiteQuality
SIO_000300: 4.383e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

QD
type: SiteQuality
SIO_000300: 9.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

DP
type: SiteQuality
SIO_000300: 2.7087e5

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 7.5e0
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GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304801670146138e-4
allele num: 7664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1616
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.288e0

VQSLOD
type: SiteQuality
SIO_000300: -1.079e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 8.81e0

DP
type: SiteQuality
SIO_000300: 2.70181e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.702e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.25e1
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GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 6.188118811881188e-4
allele num: 1616
num of homozygotes: 0

Other
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 2.70029e5

BaseQRankSum
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SIO_000300: -3.824e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 7.751937984496124e-4
allele num: 5160
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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FS
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SIO_000300: 2.999e0

VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 7650
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ReadPosRankSum
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SIO_000300: 3.49e-1

ClippingRankSum
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DP
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QD
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FS
type: SiteQuality
SIO_000300: 7.28e-1

MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -2.67e-2

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.841121495327102e-4
allele num: 5136
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 850
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Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-2

MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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SIO_000300: 3.282e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 2.615746795710175e-4
allele num: 7646
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 5116
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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Latino
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East Asian
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Other
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South Asian
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allele num: 7644
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African
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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FS
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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African
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.487562189054726e-3
allele num: 402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5164
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.77143e5

FS
type: SiteQuality
SIO_000300: 2.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

VQSLOD
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SIO_000300: 6.64e-1

BaseQRankSum
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SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 2.242152466367713e-3
allele num: 446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 5.78e-1

ClippingRankSum
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SIO_000300: -1.027e0

BaseQRankSum
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SIO_000300: -2.054e0

InbreedingCoeff
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SIO_000300: -9.1e-3

DP
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SIO_000300: 2.90482e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

QD
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SIO_000300: 1.107e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

African
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allele count: 10
allele frequency: 1.059322033898305e-2
allele num: 944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

FS
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
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SIO_000300: -2.59e-1

MQRankSum
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SIO_000300: 4.17e-1

QD
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SIO_000300: 1.421e1

VQSLOD
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InbreedingCoeff
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SIO_000300: -1.43e-2

DP
type: SiteQuality
SIO_000300: 2.92307e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 713
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
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African
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allele count: 8
allele frequency: 8.474576271186441e-3
allele num: 944
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1654
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.625e0

FS
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
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SIO_000300: 2.92323e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.661e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 8
allele frequency: 8.474576271186441e-3
allele num: 944
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 4.807692307692308e-3
allele num: 208
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 272
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East Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 8
allele frequency: 8.456659619450317e-3
allele num: 946
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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FS
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VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele frequency: NaN
allele num: 0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.196e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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ClippingRankSum
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MQRankSum
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SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 3.858e3

QD
type: SiteQuality
SIO_000300: 1.126e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.92e-2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.2011e4

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.179e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
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SIO_000300: 7.27e-1

VQSLOD
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SIO_000300: -1.513e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.367e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.796238244514106e-5
allele num: 10208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65838
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.274e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.333e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.41683e6

QD
type: SiteQuality
SIO_000300: 1.356e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517727051966974e-5
allele num: 65888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.409e1

MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

VQSLOD
type: SiteQuality
SIO_000300: -2.858e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.175e0

FS
type: SiteQuality
SIO_000300: 3.013e0

DP
type: SiteQuality
SIO_000300: 2.420226e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.967e0

DP
type: SiteQuality
SIO_000300: 2.42616e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.874e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.052e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.796238244514106e-5
allele num: 10208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65910
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.42616e6

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.033244358165494e-5
allele num: 65936
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.435831e6

QD
type: SiteQuality
SIO_000300: 1.225e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.004e1

VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.02e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 12
allele frequency: 7.336757153338225e-4
allele num: 16356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.744287458573173e-4
allele num: 11466
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.601094557616297e-5
allele num: 65780
num of homozygotes: 0

Other
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allele count: 0
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allele num: 900
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East Asian
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allele count: 1
allele frequency: 1.215657670799903e-4
allele num: 8226
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 2.448598e6

MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.601094557616297e-5
allele num: 65780
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.192e1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

GenotypeQuality
all individuals: 1432
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1536
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1598
bin: 2.25e1
variant carriers: 24

GenotypeQuality
all individuals: 1423
bin: 3.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1948
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1498
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 18280
bin: 9.75e1
variant carriers: 374

GenotypeQuality
all individuals: 2475
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 7.5e0
variant carriers: 41

GenotypeQuality
all individuals: 3457
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1175
bin: 1.25e1
variant carriers: 43

GenotypeQuality
all individuals: 2481
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1416
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2849
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2912
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 1.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1451
bin: 2.75e1
variant carriers: 19

South Asian
type: Population
allele count: 154
allele frequency: 1.22533418204965e-2
allele num: 12568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.601537475976938e-3
allele num: 6244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 126
allele frequency: 2.211845662324895e-3
allele num: 56966
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.922020867655135e-3
allele num: 7284
num of homozygotes: 0

African
type: Population
allele count: 143
allele frequency: 1.591718610863758e-2
allele num: 8984
num of homozygotes: 1

Latino
type: Population
allele count: 21
allele frequency: 2.179779946024497e-3
allele num: 9634
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.147959183673469e-2
allele num: 784
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.997e1

FS
type: SiteQuality
SIO_000300: 2.454e0

QD
type: SiteQuality
SIO_000300: 3.81e0

MQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

DP
type: SiteQuality
SIO_000300: 2.90061e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

GenotypeQuality
all individuals: 5240
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 1598
bin: 2.25e1
variant carriers: 33

GenotypeQuality
all individuals: 3457
bin: 6.75e1
variant carriers: 12

GenotypeQuality
all individuals: 5704
bin: 2.5e0
variant carriers: 37

GenotypeQuality
all individuals: 1451
bin: 2.75e1
variant carriers: 19

GenotypeQuality
all individuals: 1490
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1432
bin: 4.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1423
bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 1416
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1175
bin: 1.25e1
variant carriers: 32

GenotypeQuality
all individuals: 1122
bin: 7.5e0
variant carriers: 34

GenotypeQuality
all individuals: 1536
bin: 3.75e1
variant carriers: 31

GenotypeQuality
all individuals: 2849
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2481
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 18280
bin: 9.75e1
variant carriers: 283

GenotypeQuality
all individuals: 2475
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1948
bin: 8.75e1
variant carriers: 9

European (Non-Finnish)
type: Population
allele count: 368
allele frequency: 6.459993680440965e-3
allele num: 56966
num of homozygotes: 0

African
type: Population
allele count: 85
allele frequency: 9.461264470169191e-3
allele num: 8984
num of homozygotes: 2

East Asian
type: Population
allele count: 22
allele frequency: 3.020318506315211e-3
allele num: 7284
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.245588540585427e-3
allele num: 9634
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 6.377551020408163e-3
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.352641629535328e-3
allele num: 12568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.90061e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 2.454e0

QD
type: SiteQuality
SIO_000300: 3.81e0

MQ
type: SiteQuality
SIO_000300: 5.997e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
all individuals: 196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3640
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29313
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.98e-1

QD
type: SiteQuality
SIO_000300: 7.41e0

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.157e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 2.831604e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.39e0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29316
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3046
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4223
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3700
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0016509079994e-5
allele num: 66630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

FS
type: SiteQuality
SIO_000300: 3.748e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.577e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.826e0

DP
type: SiteQuality
SIO_000300: 2.833454e6

QD
type: SiteQuality
SIO_000300: 1.029e1

GenotypeQuality
all individuals: 4227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7482
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 5043
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.334e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.837579e6

QD
type: SiteQuality
SIO_000300: 1.018e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29346
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.68787238131847e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

VQSLOD
type: SiteQuality
SIO_000300: 5.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

DP
type: SiteQuality
SIO_000300: 2.838385e6

GenotypeQuality
all individuals: 29346
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 7484
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 4200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 3050
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GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5044
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0