12-123647530-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647530
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647530
    reference: chr 12
allele count: 2
allele frequency: 1.759757857318833e-5
allele num: 113652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2573+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475578
  ensembl transcript: ENST00000606704
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606704.1:c.23+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000545974
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545974.1:n.44T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.133+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.387+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2939+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2507+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.454T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2573+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2475+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.3029+31T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.2010+31T>A
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

12-123647543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647543
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647543
    reference: chr 12
allele count: 1
allele frequency: 8.58251227299255e-6
allele num: 116516
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2573+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.387+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475578
  ensembl transcript: ENST00000606704
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606704.1:c.23+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000545974
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545974.1:n.31G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2475+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2507+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.133+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2573+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.3029+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.2010+18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.441G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2939+18G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 29613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

12-123647550-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647550
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647550
    reference: chr 12
allele count: 5
allele frequency: 4.223472370043755e-5
allele num: 118386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475578
  ensembl transcript: ENST00000606704
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606704.1:c.23+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2507+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000545974
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545974.1:n.24T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.387+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.434T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.2010+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2573+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.3029+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.133+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2475+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2939+11T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2573+11T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31060
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

12-123647571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647571
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647571
    reference: chr 12
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000545974
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545974.1:n.3A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2497A>G
  hgvsp: ENSP00000304096.5:p.Ser833Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.123A>G
  hgvsp: ENSP00000446362.2:p.Ser42Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2563A>G
  hgvsp: ENSP00000303597.5:p.Ser855Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475578
  ensembl transcript: ENST00000606704
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606704.1:c.13A>G
  hgvsp: ENSP00000475578.1:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.3019A>G
  hgvsp: ENSP00000475489.1:p.Ser1007Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2563A>G
  hgvsp: ENSP00000376220.3:p.Ser855Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2929A>G
  hgvsp: ENSP00000445859.2:p.Ser977Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.2000A>G
  hgvsp: ENSP00000441764.1:p.Ser668Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.413A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2465A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.377A>G
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser855Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS

http://identifiers.org/exac.variant/12-123647578-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647578
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647578
    reference: chr 12
allele count: 98
allele frequency: 8.103995766075682e-4
allele num: 120928
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2556T>G
  hgvsp: ENSP00000376220.3:p.Asn852Lys
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2556T>G
  hgvsp: ENSP00000303597.5:p.Asn852Lys
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.116T>G
  hgvsp: ENSP00000446362.2:p.Asn39Lys
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1993T>G
  hgvsp: ENSP00000441764.1:p.Asn665Lys
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2490T>G
  hgvsp: ENSP00000304096.5:p.Asn830Lys
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2922T>G
  hgvsp: ENSP00000445859.2:p.Asn974Lys
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2458T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.370T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475578
  ensembl transcript: ENST00000606704
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606704.1:c.6T>G
  hgvsp: ENSP00000475578.1:p.Asn2Lys
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.406T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.3012T>G
  hgvsp: ENSP00000475489.1:p.Asn1004Lys
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
hgvs: p.Asn852Lys
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

12-123647595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647595
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647595
    reference: chr 12
allele count: 3
allele frequency: 2.476269087907552e-5
allele num: 121150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.99C>T
  hgvsp: ENSP00000446362.2:p.His34Tyr
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.353C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2539C>T
  hgvsp: ENSP00000303597.5:p.His847Tyr
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1976C>T
  hgvsp: ENSP00000441764.1:p.His660Tyr
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2995C>T
  hgvsp: ENSP00000475489.1:p.His999Tyr
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2473C>T
  hgvsp: ENSP00000304096.5:p.His825Tyr
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.389C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2905C>T
  hgvsp: ENSP00000445859.2:p.His969Tyr
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2441C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2539C>T
  hgvsp: ENSP00000376220.3:p.His847Tyr
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His847Tyr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

12-123647599-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647599
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647599
    reference: chr 12
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.385T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2901T>C
  hgvsp: ENST00000541076.2:c.2901T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2991T>C
  hgvsp: ENST00000606320.1:c.2991T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2469T>C
  hgvsp: ENST00000302373.4:c.2469T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.349T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1972T>C
  hgvsp: ENST00000539024.1:c.1972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2437T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.95T>C
  hgvsp: ENST00000541603.2:c.95T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2535T>C
  hgvsp: ENST00000302349.5:c.2535T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2535T>C
  hgvsp: ENST00000392425.3:c.2535T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe845Phe
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum

12-123647613-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647613
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647613
    reference: chr 12
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1958T>C
  hgvsp: ENST00000539024.1:c.1958T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.81T>C
  hgvsp: ENST00000541603.2:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2977T>C
  hgvsp: ENST00000606320.1:c.2977T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2521T>C
  hgvsp: ENST00000392425.3:c.2521T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2455T>C
  hgvsp: ENST00000302373.4:c.2455T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2521T>C
  hgvsp: ENST00000302349.5:c.2521T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2887T>C
  hgvsp: ENST00000541076.2:c.2887T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.335T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2423T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.371T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu841Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

12-123647626-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647626
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647626
    reference: chr 12
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2410C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2964C>G
  hgvsp: ENST00000606320.1:c.2964C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2874C>G
  hgvsp: ENST00000541076.2:c.2874C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2442C>G
  hgvsp: ENST00000302373.4:c.2442C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.68C>G
  hgvsp: ENST00000541603.2:c.68C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.358C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2508C>G
  hgvsp: ENST00000392425.3:c.2508C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2508C>G
  hgvsp: ENST00000302349.5:c.2508C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.322C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1945C>G
  hgvsp: ENST00000539024.1:c.1945C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6629
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser836Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-123647630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647630
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647630
    reference: chr 12
allele count: 6
allele frequency: 4.948371985616732e-5
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2504G>A
  hgvsp: ENSP00000376220.3:p.Arg835Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2504G>A
  hgvsp: ENSP00000303597.5:p.Arg835Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.64G>A
  hgvsp: ENSP00000446362.2:p.Arg22Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.318G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.354G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1941G>A
  hgvsp: ENSP00000441764.1:p.Arg648Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2438G>A
  hgvsp: ENSP00000304096.5:p.Arg813Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2406G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2870G>A
  hgvsp: ENSP00000445859.2:p.Arg957Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2960G>A
  hgvsp: ENSP00000475489.1:p.Arg987Gln
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg835Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

12-123647631-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647631
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647631
    reference: chr 12
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.353C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2959C>T
  hgvsp: ENSP00000475489.1:p.Arg987Ter
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2405C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2869C>T
  hgvsp: ENSP00000445859.2:p.Arg957Ter
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2437C>T
  hgvsp: ENSP00000304096.5:p.Arg813Ter
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2503C>T
  hgvsp: ENSP00000376220.3:p.Arg835Ter
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.497C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2503C>T
  hgvsp: ENSP00000303597.5:p.Arg835Ter
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1940C>T
  hgvsp: ENSP00000441764.1:p.Arg648Ter
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.63C>T
  hgvsp: ENSP00000446362.2:p.Arg22Ter
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.317C>T
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31564
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg835Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

12-123647640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647640
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647640
    reference: chr 12
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2860A>G
  hgvsp: ENSP00000445859.2:p.Ser954Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2428A>G
  hgvsp: ENSP00000304096.5:p.Ser810Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.344A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1931A>G
  hgvsp: ENSP00000441764.1:p.Ser645Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.488A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2494A>G
  hgvsp: ENSP00000303597.5:p.Ser832Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2950A>G
  hgvsp: ENSP00000475489.1:p.Ser984Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2396A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.54A>G
  hgvsp: ENSP00000446362.2:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.308A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2494A>G
  hgvsp: ENSP00000376220.3:p.Ser832Gly
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15046
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser832Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-123647645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647645
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647645
    reference: chr 12
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.339C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2489C>T
  hgvsp: ENSP00000303597.5:p.Ala830Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.483C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.303C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2855C>T
  hgvsp: ENSP00000445859.2:p.Ala952Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1926C>T
  hgvsp: ENSP00000441764.1:p.Ala643Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.49C>T
  hgvsp: ENSP00000446362.2:p.Ala17Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2423C>T
  hgvsp: ENSP00000304096.5:p.Ala808Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2945C>T
  hgvsp: ENSP00000475489.1:p.Ala982Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2391C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2489C>T
  hgvsp: ENSP00000376220.3:p.Ala830Val
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala830Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/12-123647650-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647650
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647650
    reference: chr 12
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2850T>G
  hgvsp: ENST00000541076.2:c.2850T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.334T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.478T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2484T>G
  hgvsp: ENST00000392425.3:c.2484T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2940T>G
  hgvsp: ENST00000606320.1:c.2940T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1921T>G
  hgvsp: ENST00000539024.1:c.1921T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2484T>G
  hgvsp: ENST00000302349.5:c.2484T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2418T>G
  hgvsp: ENST00000302373.4:c.2418T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.298T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2386T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.44T>G
  hgvsp: ENST00000541603.2:c.44T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr828Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

12-123647650-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647650
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647650
    reference: chr 12
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2418T>C
  hgvsp: ENST00000302373.4:c.2418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2484T>C
  hgvsp: ENST00000302349.5:c.2484T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2386T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1921T>C
  hgvsp: ENST00000539024.1:c.1921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.298T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2850T>C
  hgvsp: ENST00000541076.2:c.2850T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2940T>C
  hgvsp: ENST00000606320.1:c.2940T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.478T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.44T>C
  hgvsp: ENST00000541603.2:c.44T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.334T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2484T>C
  hgvsp: ENST00000392425.3:c.2484T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr828Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-123647655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647655
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647655
    reference: chr 12
allele count: 3
allele frequency: 2.47618733182561e-5
allele num: 121154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.293G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2413G>A
  hgvsp: ENSP00000304096.5:p.Val805Met
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2479G>A
  hgvsp: ENSP00000376220.3:p.Val827Met
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2381G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2479G>A
  hgvsp: ENSP00000303597.5:p.Val827Met
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2845G>A
  hgvsp: ENSP00000445859.2:p.Val949Met
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.329G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.39G>A
  hgvsp: ENSP00000446362.2:p.Val14Met
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.473G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2935G>A
  hgvsp: ENSP00000475489.1:p.Val979Met
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1916G>A
  hgvsp: ENSP00000441764.1:p.Val640Met
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val827Met
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

12-123647664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647664
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647664
    reference: chr 12
allele count: 2
allele frequency: 1.65188231990353e-5
allele num: 121074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2404C>T
  hgvsp: ENST00000302373.4:c.2404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1907C>T
  hgvsp: ENST00000539024.1:c.1907C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.30C>T
  hgvsp: ENST00000541603.2:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.320C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2836C>T
  hgvsp: ENST00000541076.2:c.2836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2470C>T
  hgvsp: ENST00000302349.5:c.2470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.284C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.464C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2470C>T
  hgvsp: ENST00000392425.3:c.2470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2372C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2926C>T
  hgvsp: ENST00000606320.1:c.2926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu824Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

12-123647671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647671
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647671
    reference: chr 12
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2919G>A
  hgvsp: ENST00000606320.1:c.2919G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.313G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2463G>A
  hgvsp: ENST00000302349.5:c.2463G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.277G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2463G>A
  hgvsp: ENST00000392425.3:c.2463G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1900G>A
  hgvsp: ENST00000539024.1:c.1900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2397G>A
  hgvsp: ENST00000302373.4:c.2397G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.23G>A
  hgvsp: ENST00000541603.2:c.23G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2829G>A
  hgvsp: ENST00000541076.2:c.2829G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2365G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.457G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu821Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

12-123647679-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647679
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647679
    reference: chr 12
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1892A>C
  hgvsp: ENSP00000441764.1:p.Lys632Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2389A>C
  hgvsp: ENSP00000304096.5:p.Lys797Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2821A>C
  hgvsp: ENSP00000445859.2:p.Lys941Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2455A>C
  hgvsp: ENSP00000303597.5:p.Lys819Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.269A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.449A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2911A>C
  hgvsp: ENSP00000475489.1:p.Lys971Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.15A>C
  hgvsp: ENSP00000446362.2:p.Lys6Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2357A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2455A>C
  hgvsp: ENSP00000376220.3:p.Lys819Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.305A>C
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys819Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-123647696-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647696
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647695
    reference: chr 12
allele count: 1
allele frequency: 8.314625426124552e-6
allele num: 120270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2453-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2909-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1890-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2387-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.303-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2819-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2355-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.447-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.13-16delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.251delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2453-16delT
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: GA
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

12-123647699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647699
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647699
    reference: chr 12
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2355-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2819-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2453-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.303-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.249C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1890-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2909-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.13-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.447-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2387-18C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2453-18C>T
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6095
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

12-123647708-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647708
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647708
    reference: chr 12
allele count: 43
allele frequency: 3.588476816770705e-4
allele num: 119828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.240A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2453-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2909-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2819-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.303-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2453-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.13-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2355-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1890-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2387-27A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.447-27A>G
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22107
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12533
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-123647710-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647710
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647710
    reference: chr 12
allele count: 1
allele frequency: 8.350172848577966e-6
allele num: 119758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2453-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2387-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2909-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2355-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.303-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.238G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2453-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.13-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.447-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2819-29G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1890-29G>T
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12540
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3172
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-123647715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647715
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647715
    reference: chr 12
allele count: 6
allele frequency: 5.026388539834129e-5
allele num: 119370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.447-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.233G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2355-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1890-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2909-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2453-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2453-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.13-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2819-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.303-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2387-34G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8511
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum

12-123647725-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647725
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647725
    reference: chr 12
allele count: 86476
allele frequency: 7.32189727871573e-1
allele num: 118106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2355-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.303-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.447-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2453-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.223C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.13-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2909-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2453-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2387-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2819-44C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1890-44C>G
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 837
genotype depth: GenotypeDepth
  all individuals: 11782
  bin: 2.25e1
  variant carriers: 9872
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 442
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.25e1
  variant carriers: 1597
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 3.75e1
  variant carriers: 4709
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 3.25e1
  variant carriers: 6464
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 2.75e1
  variant carriers: 8544
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 1.75e1
  variant carriers: 8268
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 771
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.75e1
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 1.25e1
  variant carriers: 3947
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 344
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.75e1
  variant carriers: 1075
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 4.25e1
  variant carriers: 3286
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 4.75e1
  variant carriers: 2424
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 9.75e1
  variant carriers: 711
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 4.75e1
  variant carriers: 1978
num of homozygotes: 33238
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

12-123647726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647726
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647726
    reference: chr 12
allele count: 1
allele frequency: 8.518903446748335e-6
allele num: 117386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2453-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2387-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2819-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.13-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2355-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2453-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.303-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.222A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1890-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.447-45A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2909-45A>G
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10432
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8624
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

12-123647733-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123647733
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123647733
    reference: chr 12
allele count: 1
allele frequency: 8.610594475442584e-6
allele num: 116136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.303-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2453-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2453-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.447-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2387-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2909-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000536198
  gene symbol: MPHOSPH9
  hgvsc: ENST00000536198.1:n.215T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.13-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2819-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1890-52T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2355-52T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

12-123648440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648440
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648440
    reference: chr 12
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+57C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+57C>T
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

12-123648449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648449
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648449
    reference: chr 12
allele count: 2
allele frequency: 1.653986106516705e-5
allele num: 120920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*37G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+48G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+48G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS

12-123648453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648453
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648453
    reference: chr 12
allele count: 11
allele frequency: 9.09090909090909e-5
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+44C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+44C>T
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

12-123648454-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648454
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648454
    reference: chr 12
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+43T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+43T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

12-123648459-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648459
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648459
    reference: chr 12
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+38C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*27C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+38C>T
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

12-123648468-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648468
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648468
    reference: chr 12
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*18G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+29G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+29G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum

12-123648476-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648476
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648476
    reference: chr 12
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*10T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+21T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+21T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

12-123648476-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648476
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648476
    reference: chr 12
allele count: 6
allele frequency: 4.945190801945108e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*10T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+21T>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+21T>A
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

12-123648477-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648477
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648477
    reference: chr 12
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*9A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+20A>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+20A>C
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-123648482-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648482
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648482
    reference: chr 12
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*4T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+15T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+15T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

12-123648484-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648484
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648484
    reference: chr 12
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+13T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+13T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

12-123648487-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648487
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648487
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.491A>G
  hgvsp: ENSP00000475923.1:p.Ter164TrpextTer38
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+10A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+10A>G
  variant of: http://identifiers.org/hgnc/7215
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter164TrpextTer38
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

12-123648491-TCTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648491
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648487
    reference: chr 12
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.12+2_12+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2354+2_*2354+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2452+2_2452+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2818+2_2818+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2452+2_2452+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.483_486delTAAG
  hgvsp: ENSP00000475923.1:p.Ser161ArgfsTer13
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1889+2_1889+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.302+2_302+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2908+2_2908+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2386+2_2386+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.446+2_446+5delTAAG
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2452+2_2452+5delTAAG
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: TCTTA
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

12-123648499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648499
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648499
    reference: chr 12
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2352C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1887C>T
  hgvsp: ENSP00000441764.1:p.Pro630Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.479C>T
  hgvsp: ENSP00000475923.1:p.Pro160Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2450C>T
  hgvsp: ENSP00000303597.5:p.Pro817Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2450C>T
  hgvsp: ENSP00000376220.3:p.Pro817Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2384C>T
  hgvsp: ENSP00000304096.5:p.Pro795Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446362
  ensembl transcript: ENST00000541603
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541603.2:c.10C>T
  hgvsp: ENSP00000446362.2:p.Pro4Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2816C>T
  hgvsp: ENSP00000445859.2:p.Pro939Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2906C>T
  hgvsp: ENSP00000475489.1:p.Pro969Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.444C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.300C>T
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro817Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

12-123648514-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648514
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648514
    reference: chr 12
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2369G>A
  hgvsp: ENSP00000304096.5:p.Arg790His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2435G>A
  hgvsp: ENSP00000376220.3:p.Arg812His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2891G>A
  hgvsp: ENSP00000475489.1:p.Arg964His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2337G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2435G>A
  hgvsp: ENSP00000303597.5:p.Arg812His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1872G>A
  hgvsp: ENSP00000441764.1:p.Arg625His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.429G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2801G>A
  hgvsp: ENSP00000445859.2:p.Arg934His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.464G>A
  hgvsp: ENSP00000475923.1:p.Arg155His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.285G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg812His
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

12-123648515-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648515
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648515
    reference: chr 12
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.463C>A
  hgvsp: ENSP00000475923.1:p.Arg155Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2890C>A
  hgvsp: ENSP00000475489.1:p.Arg964Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.284C>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.428C>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2368C>A
  hgvsp: ENSP00000304096.5:p.Arg790Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2336C>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1871C>A
  hgvsp: ENSP00000441764.1:p.Arg625Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2800C>A
  hgvsp: ENSP00000445859.2:p.Arg934Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2434C>A
  hgvsp: ENSP00000303597.5:p.Arg812Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2434C>A
  hgvsp: ENSP00000376220.3:p.Arg812Ser
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg812Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-123648534-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648534
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648534
    reference: chr 12
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.265A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2349A>G
  hgvsp: ENST00000302373.4:c.2349A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.444A>G
  hgvsp: ENST00000606321.1:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2317A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2415A>G
  hgvsp: ENST00000392425.3:c.2415A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.409A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2781A>G
  hgvsp: ENST00000541076.2:c.2781A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2871A>G
  hgvsp: ENST00000606320.1:c.2871A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2415A>G
  hgvsp: ENST00000302349.5:c.2415A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1852A>G
  hgvsp: ENST00000539024.1:c.1852A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser805Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

12-123648550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648550
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648550
    reference: chr 12
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2333C>T
  hgvsp: ENSP00000304096.5:p.Ala778Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.428C>T
  hgvsp: ENSP00000475923.1:p.Ala143Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1836C>T
  hgvsp: ENSP00000441764.1:p.Ala613Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2399C>T
  hgvsp: ENSP00000303597.5:p.Ala800Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.393C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2765C>T
  hgvsp: ENSP00000445859.2:p.Ala922Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2855C>T
  hgvsp: ENSP00000475489.1:p.Ala952Val
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.249C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2301C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2399C>T
  hgvsp: ENSP00000376220.3:p.Ala800Val
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala800Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/12-123648551-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648551
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648551
    reference: chr 12
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1835G>T
  hgvsp: ENSP00000441764.1:p.Ala613Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2764G>T
  hgvsp: ENSP00000445859.2:p.Ala922Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2332G>T
  hgvsp: ENSP00000304096.5:p.Ala778Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.248G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2300G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.392G>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2398G>T
  hgvsp: ENSP00000303597.5:p.Ala800Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.427G>T
  hgvsp: ENSP00000475923.1:p.Ala143Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2854G>T
  hgvsp: ENSP00000475489.1:p.Ala952Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2398G>T
  hgvsp: ENSP00000376220.3:p.Ala800Ser
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala800Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

12-123648552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648552
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648552
    reference: chr 12
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2763G>A
  hgvsp: ENST00000541076.2:c.2763G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2331G>A
  hgvsp: ENST00000302373.4:c.2331G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2397G>A
  hgvsp: ENST00000302349.5:c.2397G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2853G>A
  hgvsp: ENST00000606320.1:c.2853G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.426G>A
  hgvsp: ENST00000606321.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1834G>A
  hgvsp: ENST00000539024.1:c.1834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2397G>A
  hgvsp: ENST00000392425.3:c.2397G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2299G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.391G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.247G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser799Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

12-123648553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648553
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648553
    reference: chr 12
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2396C>T
  hgvsp: ENSP00000303597.5:p.Ser799Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2330C>T
  hgvsp: ENSP00000304096.5:p.Ser777Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.246C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2298C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.425C>T
  hgvsp: ENSP00000475923.1:p.Ser142Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2762C>T
  hgvsp: ENSP00000445859.2:p.Ser921Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.390C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1833C>T
  hgvsp: ENSP00000441764.1:p.Ser612Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2396C>T
  hgvsp: ENSP00000376220.3:p.Ser799Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2852C>T
  hgvsp: ENSP00000475489.1:p.Ser951Leu
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser799Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

12-123648561-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648561
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648561
    reference: chr 12
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2844A>T
  hgvsp: ENSP00000475489.1:p.Arg948Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2290A>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1825A>T
  hgvsp: ENSP00000441764.1:p.Arg609Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2754A>T
  hgvsp: ENSP00000445859.2:p.Arg918Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2388A>T
  hgvsp: ENSP00000303597.5:p.Arg796Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.417A>T
  hgvsp: ENSP00000475923.1:p.Arg139Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.382A>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.238A>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2322A>T
  hgvsp: ENSP00000304096.5:p.Arg774Ser
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2388A>T
  hgvsp: ENSP00000376220.3:p.Arg796Ser
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg796Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-123648573-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648573
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648573
    reference: chr 12
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.226G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2310G>C
  hgvsp: ENSP00000304096.5:p.Gln770His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2376G>C
  hgvsp: ENSP00000303597.5:p.Gln792His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.405G>C
  hgvsp: ENSP00000475923.1:p.Gln135His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2742G>C
  hgvsp: ENSP00000445859.2:p.Gln914His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1813G>C
  hgvsp: ENSP00000441764.1:p.Gln605His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2832G>C
  hgvsp: ENSP00000475489.1:p.Gln944His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2376G>C
  hgvsp: ENSP00000376220.3:p.Gln792His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2278G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.370G>C
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln792His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

12-123648574-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648574
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648574
    reference: chr 12
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.404A>G
  hgvsp: ENSP00000475923.1:p.Gln135Arg
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2375A>G
  hgvsp: ENSP00000303597.5:p.Gln792Arg
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.225A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2277A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2831A>G
  hgvsp: ENSP00000475489.1:p.Gln944Arg
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2375A>G
  hgvsp: ENSP00000376220.3:p.Gln792Arg
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2741A>G
  hgvsp: ENSP00000445859.2:p.Gln914Arg
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1812A>G
  hgvsp: ENSP00000441764.1:p.Gln605Arg
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.369A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2309A>G
  hgvsp: ENSP00000304096.5:p.Gln770Arg
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln792Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

12-123648576-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648576
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648576
    reference: chr 12
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.402A>G
  hgvsp: ENST00000606321.1:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2275A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2829A>G
  hgvsp: ENST00000606320.1:c.2829A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2373A>G
  hgvsp: ENST00000302349.5:c.2373A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.223A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1810A>G
  hgvsp: ENST00000539024.1:c.1810A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2739A>G
  hgvsp: ENST00000541076.2:c.2739A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2373A>G
  hgvsp: ENST00000392425.3:c.2373A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.367A>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2307A>G
  hgvsp: ENST00000302373.4:c.2307A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln791Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

12-123648593-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648593
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648593
    reference: chr 12
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.350C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.385C>G
  hgvsp: ENSP00000475923.1:p.Pro129Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2290C>G
  hgvsp: ENSP00000304096.5:p.Pro764Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.206C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2722C>G
  hgvsp: ENSP00000445859.2:p.Pro908Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2356C>G
  hgvsp: ENSP00000303597.5:p.Pro786Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2258C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2812C>G
  hgvsp: ENSP00000475489.1:p.Pro938Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2356C>G
  hgvsp: ENSP00000376220.3:p.Pro786Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1793C>G
  hgvsp: ENSP00000441764.1:p.Pro599Ala
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro786Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-123648594-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648594
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648594
    reference: chr 12
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2721T>G
  hgvsp: ENST00000541076.2:c.2721T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1792T>G
  hgvsp: ENST00000539024.1:c.1792T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2355T>G
  hgvsp: ENST00000302349.5:c.2355T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.384T>G
  hgvsp: ENST00000606321.1:c.384T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2289T>G
  hgvsp: ENST00000302373.4:c.2289T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2257T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2811T>G
  hgvsp: ENST00000606320.1:c.2811T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.349T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2355T>G
  hgvsp: ENST00000392425.3:c.2355T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.205T>G
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser785Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

12-123648598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648598
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648598
    reference: chr 12
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2285G>A
  hgvsp: ENSP00000304096.5:p.Arg762His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2351G>A
  hgvsp: ENSP00000303597.5:p.Arg784His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2253G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2717G>A
  hgvsp: ENSP00000445859.2:p.Arg906His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.380G>A
  hgvsp: ENSP00000475923.1:p.Arg127His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2351G>A
  hgvsp: ENSP00000376220.3:p.Arg784His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1788G>A
  hgvsp: ENSP00000441764.1:p.Arg597His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2807G>A
  hgvsp: ENSP00000475489.1:p.Arg936His
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.345G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.201G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg784His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

12-123648613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648613
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648613
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.365C>T
  hgvsp: ENSP00000475923.1:p.Ser122Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.186C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2336C>T
  hgvsp: ENSP00000376220.3:p.Ser779Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2702C>T
  hgvsp: ENSP00000445859.2:p.Ser901Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1773C>T
  hgvsp: ENSP00000441764.1:p.Ser592Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.330C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2238C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2336C>T
  hgvsp: ENSP00000303597.5:p.Ser779Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2792C>T
  hgvsp: ENSP00000475489.1:p.Ser931Leu
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2270C>T
  hgvsp: ENSP00000304096.5:p.Ser757Leu
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser779Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-123648614-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648614
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648614
    reference: chr 12
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.185T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2335T>G
  hgvsp: ENSP00000303597.5:p.Ser779Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.364T>G
  hgvsp: ENSP00000475923.1:p.Ser122Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2701T>G
  hgvsp: ENSP00000445859.2:p.Ser901Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.329T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2335T>G
  hgvsp: ENSP00000376220.3:p.Ser779Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2269T>G
  hgvsp: ENSP00000304096.5:p.Ser757Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2791T>G
  hgvsp: ENSP00000475489.1:p.Ser931Ala
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2237T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1772T>G
  hgvsp: ENSP00000441764.1:p.Ser592Ala
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29492
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser779Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-123648628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648628
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648628
    reference: chr 12
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2223G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2255G>A
  hgvsp: ENSP00000304096.5:p.Arg752Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2321G>A
  hgvsp: ENSP00000376220.3:p.Arg774Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2687G>A
  hgvsp: ENSP00000445859.2:p.Arg896Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2777G>A
  hgvsp: ENSP00000475489.1:p.Arg926Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1758G>A
  hgvsp: ENSP00000441764.1:p.Arg587Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.315G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2321G>A
  hgvsp: ENSP00000303597.5:p.Arg774Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.350G>A
  hgvsp: ENSP00000475923.1:p.Arg117Gln
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.171G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg774Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

12-123648629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648629
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648629
    reference: chr 12
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.349C>T
  hgvsp: ENSP00000475923.1:p.Arg117Trp
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2222C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2320C>T
  hgvsp: ENSP00000303597.5:p.Arg774Trp
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.314C>T
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2320C>T
  hgvsp: ENSP00000376220.3:p.Arg774Trp
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2776C>T
  hgvsp: ENSP00000475489.1:p.Arg926Trp
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2686C>T
  hgvsp: ENSP00000445859.2:p.Arg896Trp
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2254C>T
  hgvsp: ENSP00000304096.5:p.Arg752Trp
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1757C>T
  hgvsp: ENSP00000441764.1:p.Arg587Trp
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.170C>T
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg774Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/12-123648649-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648649
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648650
    reference: chr 12
allele count: 2
allele frequency: 1.654013463669594e-5
allele num: 120918
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-13dupT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-13dupT
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/12-123648649-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648649
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648648
    reference: chr 12
allele count: 11
allele frequency: 9.097074050182768e-5
allele num: 120918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-13delT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-13delT
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8959
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: CA
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-123648651-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648651
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648651
    reference: chr 12
allele count: 2
allele frequency: 1.650600818698006e-5
allele num: 121168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-14T>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-14T>G
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

12-123648657-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648657
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648657
    reference: chr 12
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-20T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-20T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3693
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

12-123648658-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648658
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648658
    reference: chr 12
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-21C>G
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-21C>G
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8513
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-123648659-CAAAACAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648659
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648652
    reference: chr 12
allele count: 3
allele frequency: 2.475901228047009e-5
allele num: 121168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-29_162-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-29_341-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-29_2768-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-29_*2214-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-29_2678-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-29_306-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-29_2312-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-29_2246-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-29_1749-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-29_2312-23delTTGTTTT
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4507
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: CAAAACAA
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

12-123648666-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648666
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648666
    reference: chr 12
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-29T>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-29T>C
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

12-123648671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648671
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648671
    reference: chr 12
allele count: 24
allele frequency: 1.981276932983308e-4
allele num: 121134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-34G>A
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-34G>A
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-123648681-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123648681
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 123648681
    reference: chr 12
allele count: 11
allele frequency: 9.092111353567414e-5
allele num: 120984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000607619
  gene symbol: MPHOSPH9
  hgvsc: ENST00000607619.1:n.306-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000446249
  ensembl transcript: ENST00000545556
  gene symbol: MPHOSPH9
  hgvsc: ENST00000545556.2:c.*2214-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475923
  ensembl transcript: ENST00000606321
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606321.1:c.341-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000441764
  ensembl transcript: ENST00000539024
  gene symbol: MPHOSPH9
  hgvsc: ENST00000539024.1:c.1749-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000475489
  ensembl transcript: ENST00000606320
  gene symbol: MPHOSPH9
  hgvsc: ENST00000606320.1:c.2768-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000376220
  ensembl transcript: ENST00000392425
  gene symbol: MPHOSPH9
  hgvsc: ENST00000392425.3:c.2312-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000445859
  ensembl transcript: ENST00000541076
  gene symbol: MPHOSPH9
  hgvsc: ENST00000541076.2:c.2678-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000303597
  ensembl transcript: ENST00000302349
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302349.5:c.2312-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl protein: ENSP00000304096
  ensembl transcript: ENST00000302373
  gene symbol: MPHOSPH9
  hgvsc: ENST00000302373.4:c.2246-44G>C
  variant of: http://identifiers.org/hgnc/7215
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000051825
  ensembl transcript: ENST00000538250
  gene symbol: MPHOSPH9
  hgvsc: ENST00000538250.1:n.162-44G>C
  variant of: http://identifiers.org/hgnc/7215
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3548
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

GenotypeDepth
all individuals: 12361
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6357
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1113
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.764290755116443e-4
allele num: 11336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 1.231e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.591261e6

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeDepth
all individuals: 1330
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2015
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.529051987767584e-4
allele num: 6540
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -3.841e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.584e1

DP
type: SiteQuality
SIO_000300: 1.660013e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.524e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6376
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 4
allele frequency: 3.485535029627048e-4
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.569438969911969e-5
allele num: 15222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 1.684056e6

QD
type: SiteQuality
SIO_000300: 1.496e1

GenotypeDepth
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 871
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variant carriers: 0

GenotypeDepth
all individuals: 403
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 609
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 1180
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2833
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.715778e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

VQSLOD
type: SiteQuality
SIO_000300: -4.653e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

FS
type: SiteQuality
SIO_000300: 1.082e0

GenotypeDepth
all individuals: 348
bin: 6.75e1
variant carriers: 8

GenotypeDepth
all individuals: 14651
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variant carriers: 3

GenotypeQuality
all individuals: 6573
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 97

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 2023
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

African
type: Population
allele count: 93
allele frequency: 8.973369355461213e-3
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.459010722933241e-4
allele num: 11564
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

DP
type: SiteQuality
SIO_000300: 1.723501e6

QD
type: SiteQuality
SIO_000300: 1.403e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2198
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 864
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6400
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variant carriers: 2

GenotypeQuality
all individuals: 32
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 38269
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.824373631719776e-4
allele num: 16444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.723538e6

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 1.011e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 2860
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6400
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GenotypeQuality
all individuals: 6629
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 865
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 2027
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 1183
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.243e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.723986e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.858e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.402e0

QD
type: SiteQuality
SIO_000300: 1.895e1

MQRankSum
type: SiteQuality
SIO_000300: -2.144e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

FS
type: SiteQuality
SIO_000300: 4.637e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.615e-1

BaseQRankSum
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SIO_000300: 4.81e0

DP
type: SiteQuality
SIO_000300: 1.724999e6

QD
type: SiteQuality
SIO_000300: 1.067e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.665e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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QD
type: SiteQuality
SIO_000300: 9.01e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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DP
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.81139337952271e-4
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -7.62e-1

ClippingRankSum
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ReadPosRankSum
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SIO_000300: 3.03e-1

VQSLOD
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SIO_000300: 1.58e0

BaseQRankSum
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SIO_000300: 5.85e-1

DP
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SIO_000300: 1.726024e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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Other
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num of homozygotes: 0

MQRankSum
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SIO_000300: 9.350000000000001e-1

DP
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ClippingRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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VQSLOD
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SIO_000300: -1.57e0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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African
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66634
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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QD
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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MQRankSum
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SIO_000300: -3.08e-1

ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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QD
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MQ
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Other
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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European (Finnish)
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MQ
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VQSLOD
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QD
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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Latino
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allele num: 11554
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South Asian
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FS
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MQ
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BaseQRankSum
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QD
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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South Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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East Asian
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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South Asian
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: -1.406e0

DP
type: SiteQuality
SIO_000300: 1.722829e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.922e0

FS
type: SiteQuality
SIO_000300: 1.298e0

QD
type: SiteQuality
SIO_000300: 1.175e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.804e0

InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
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BaseQRankSum
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SIO_000300: -3.718e0

MQRankSum
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SIO_000300: -2.58e-1

ClippingRankSum
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SIO_000300: -1.8e-2

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.720077e6

FS
type: SiteQuality
SIO_000300: 1.3093e1

ReadPosRankSum
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SIO_000300: 1.2e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.507704369327262e-5
allele num: 66326
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.714706e6

MQRankSum
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SIO_000300: -4.3e-2

InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
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VQSLOD
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SIO_000300: -2.132e0

QD
type: SiteQuality
SIO_000300: 1.709e1

FS
type: SiteQuality
SIO_000300: 1.722e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2010
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GenotypeQuality
all individuals: 1090
bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.682448e6

FS
type: SiteQuality
SIO_000300: 4.509e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
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SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.652e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.624e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516944267467613e-5
allele num: 65922
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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African
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allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
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MQRankSum
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SIO_000300: 3.5e-1

BaseQRankSum
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SIO_000300: -2.392e0

ClippingRankSum
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SIO_000300: 8.19e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65686
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 2.624832132828714e-3
allele num: 16382
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East Asian
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allele count: 0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65630
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.118827632625589e-5
allele num: 65372
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 139

GenotypeQuality
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bin: 9.75e1
variant carriers: 31637

GenotypeQuality
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bin: 5.75e1
variant carriers: 1205

GenotypeQuality
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bin: 2.75e1
variant carriers: 356

GenotypeQuality
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bin: 4.25e1
variant carriers: 878

GenotypeQuality
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bin: 6.25e1
variant carriers: 2522

GenotypeQuality
all individuals: 1443
bin: 7.25e1
variant carriers: 1229

GenotypeQuality
all individuals: 2260
bin: 8.25e1
variant carriers: 2073

European (Non-Finnish)
type: Population
allele count: 49862
allele frequency: 7.731261822805222e-1
allele num: 64494
num of homozygotes: 19253

European (Finnish)
type: Population
allele count: 5281
allele frequency: 8.089767156862745e-1
allele num: 6528
num of homozygotes: 2138

African
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allele count: 2438
allele frequency: 2.395362546669287e-1
allele num: 10178
num of homozygotes: 307

East Asian
type: Population
allele count: 8259
allele frequency: 9.750885478158205e-1
allele num: 8470
num of homozygotes: 4027

Latino
type: Population
allele count: 8085
allele frequency: 7.209737827715356e-1
allele num: 11214
num of homozygotes: 2919

Other
type: Population
allele count: 675
allele frequency: 7.533482142857143e-1
allele num: 896
num of homozygotes: 251

South Asian
type: Population
allele count: 11876
allele frequency: 7.274286414308465e-1
allele num: 16326
num of homozygotes: 4343

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.409e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 1.056e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.876424e6

QD
type: SiteQuality
SIO_000300: 3.011e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.99e0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

GenotypeQuality
all individuals: 1665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.821253191907288e-5
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 3.112e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.694304e6

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1666
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variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583029919265474e-5
allele num: 63170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 8.718e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.677705e6

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 2100
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 475
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GenotypeQuality
all individuals: 3608
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.644e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 3.203e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.349e0

DP
type: SiteQuality
SIO_000300: 2.377819e6

GenotypeQuality
all individuals: 223
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variant carriers: 0

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3649
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29430
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
all individuals: 4223
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GenotypeQuality
all individuals: 289
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.392016e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.693e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 11
allele frequency: 1.058914131690412e-3
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.568e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.744e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 3.587e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 2.399722e6

GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.400684e6

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.542e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2386
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.54e0

QD
type: SiteQuality
SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 2.409251e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.81e-1

InbreedingCoeff
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SIO_000300: 4.7e-3

VQSLOD
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.415e1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.418337e6

ClippingRankSum
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SIO_000300: -1.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 5.639999999999999e-1

BaseQRankSum
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SIO_000300: -2.446e0

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

QD
type: SiteQuality
SIO_000300: 1.321e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 8.996311512279965e-5
allele num: 66694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
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SIO_000300: 1.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

BaseQRankSum
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SIO_000300: -2.446e0

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.418337e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
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MQ
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: 1.62e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 6.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66716
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

VQSLOD
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Latino
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DP
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VQSLOD
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FS
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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ReadPosRankSum
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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Latino
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East Asian
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South Asian
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QD
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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allele num: 8654
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African
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European (Finnish)
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Latino
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Other
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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Latino
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East Asian
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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East Asian
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Other
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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Other
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European (Finnish)
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MQRankSum
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VQSLOD
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DP
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SIO_000300: 2.420617e6

ClippingRankSum
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SIO_000300: 5.14e-1

QD
type: SiteQuality
SIO_000300: 1.128e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

FS
type: SiteQuality
SIO_000300: 5.02e-1

MQ
type: SiteQuality
SIO_000300: 5.886e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11578
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Other
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MQRankSum
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VQSLOD
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QD
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DP
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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Other
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FS
type: SiteQuality
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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SIO_000300: 2.420876e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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Other
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South Asian
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European (Finnish)
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Latino
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African
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Other
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European (Non-Finnish)
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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Other
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Other
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.972e1

VQSLOD
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ClippingRankSum
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SIO_000300: -5.97e-1

InbreedingCoeff
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FS
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SIO_000300: 3.577e0

QD
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BaseQRankSum
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SIO_000300: 3.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

DP
type: SiteQuality
SIO_000300: 2.420985e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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Other
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ClippingRankSum
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QD
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VQSLOD
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FS
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DP
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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MQRankSum
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FS
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QD
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.403e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
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SIO_000300: 4.4e0

InbreedingCoeff
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.420592e6

ClippingRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -1.665e0

FS
type: SiteQuality
SIO_000300: 1.456e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.006e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 2
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allele num: 16508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
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Latino
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.111722283339445e-5
allele num: 16362
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66528
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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African
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allele count: 0
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Other
type: Population
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66528
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African
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East Asian
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European (Finnish)
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Other
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Latino
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South Asian
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 1.215214485356665e-4
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European (Non-Finnish)
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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BaseQRankSum
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.863e1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

FS
type: SiteQuality
SIO_000300: 1.885e0

QD
type: SiteQuality
SIO_000300: 1.912e1

VQSLOD
type: SiteQuality
SIO_000300: -1.334e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

DP
type: SiteQuality
SIO_000300: 2.416458e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.51e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.416464e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

MQ
type: SiteQuality
SIO_000300: 5.099e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.502881844380403e-5
allele num: 66624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.527e0

MQ
type: SiteQuality
SIO_000300: 5.398e1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.238e0

FS
type: SiteQuality
SIO_000300: 4.671e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

QD
type: SiteQuality
SIO_000300: 7.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 2.416553e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.152e1

DP
type: SiteQuality
SIO_000300: 2.411183e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

FS
type: SiteQuality
SIO_000300: 1.897e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.851996397478235e-4
allele num: 66620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 2.404244e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.278178015338136e-3
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.393075e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1