12-104714912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714912
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714912
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.739G>A
  hgvsp: ENSP00000373506.3:p.Val247Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1033G>A
  hgvsp: ENSP00000434516.1:p.Val345Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.880G>A
  hgvsp: ENSP00000367310.4:p.Val294Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.733G>A
  hgvsp: ENSP00000440978.1:p.Val245Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.715G>A
  hgvsp: ENSP00000380844.2:p.Val239Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.583G>A
  hgvsp: ENSP00000433935.1:p.Val195Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4203G>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.739G>A
  hgvsp: ENSP00000435929.1:p.Val247Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.715G>A
  hgvsp: ENSP00000435123.1:p.Val239Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.928G>A
  hgvsp: ENSP00000393328.1:p.Val310Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.583G>A
  hgvsp: ENSP00000421934.2:p.Val195Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.583G>A
  hgvsp: ENSP00000433425.1:p.Val195Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.469G>A
  hgvsp: ENSP00000434919.1:p.Val157Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1033G>A
  hgvsp: ENSP00000412045.2:p.Val345Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.583G>A
  hgvsp: ENSP00000347020.6:p.Val195Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.790G>A
  hgvsp: ENSP00000432812.1:p.Val264Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.469G>A
  hgvsp: ENSP00000442709.1:p.Val157Ile
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val345Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

12-104714913-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714913
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714913
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.716T>C
  hgvsp: ENSP00000380844.2:p.Val239Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.584T>C
  hgvsp: ENSP00000421934.2:p.Val195Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.791T>C
  hgvsp: ENSP00000432812.1:p.Val264Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.584T>C
  hgvsp: ENSP00000347020.6:p.Val195Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.929T>C
  hgvsp: ENSP00000393328.1:p.Val310Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1034T>C
  hgvsp: ENSP00000412045.2:p.Val345Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.584T>C
  hgvsp: ENSP00000433935.1:p.Val195Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.740T>C
  hgvsp: ENSP00000435929.1:p.Val247Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4202T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.881T>C
  hgvsp: ENSP00000367310.4:p.Val294Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.740T>C
  hgvsp: ENSP00000373506.3:p.Val247Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1034T>C
  hgvsp: ENSP00000434516.1:p.Val345Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.716T>C
  hgvsp: ENSP00000435123.1:p.Val239Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.470T>C
  hgvsp: ENSP00000434919.1:p.Val157Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.734T>C
  hgvsp: ENSP00000440978.1:p.Val245Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.584T>C
  hgvsp: ENSP00000433425.1:p.Val195Ala
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.470T>C
  hgvsp: ENSP00000442709.1:p.Val157Ala
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val345Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

12-104714932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714932
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714932
    reference: chr 12
allele count: 2
allele frequency: 1.65604040738594e-5
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.603C>T
  hgvsp: ENST00000524698.1:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.489C>T
  hgvsp: ENST00000540716.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.753C>T
  hgvsp: ENST00000542918.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.603C>T
  hgvsp: ENST00000503506.2:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.489C>T
  hgvsp: ENST00000529546.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.735C>T
  hgvsp: ENST00000397736.2:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.900C>T
  hgvsp: ENST00000378070.4:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.810C>T
  hgvsp: ENST00000526950.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1053C>T
  hgvsp: ENST00000525566.1:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4183C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1053C>T
  hgvsp: ENST00000429002.2:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.735C>T
  hgvsp: ENST00000526390.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.759C>T
  hgvsp: ENST00000388854.3:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.759C>T
  hgvsp: ENST00000526691.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.603C>T
  hgvsp: ENST00000527688.1:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.603C>T
  hgvsp: ENST00000354940.6:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.948C>T
  hgvsp: ENST00000427956.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val351Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

12-104714945-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714945
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714945
    reference: chr 12
allele count: 4
allele frequency: 3.31208081477188e-5
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.772G>A
  hgvsp: ENSP00000435929.1:p.Ala258Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.616G>A
  hgvsp: ENSP00000433425.1:p.Ala206Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1066G>A
  hgvsp: ENSP00000412045.2:p.Ala356Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.961G>A
  hgvsp: ENSP00000393328.1:p.Ala321Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.748G>A
  hgvsp: ENSP00000435123.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.616G>A
  hgvsp: ENSP00000347020.6:p.Ala206Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.772G>A
  hgvsp: ENSP00000373506.3:p.Ala258Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.823G>A
  hgvsp: ENSP00000432812.1:p.Ala275Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4170G>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.913G>A
  hgvsp: ENSP00000367310.4:p.Ala305Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.502G>A
  hgvsp: ENSP00000434919.1:p.Ala168Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.748G>A
  hgvsp: ENSP00000380844.2:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.766G>A
  hgvsp: ENSP00000440978.1:p.Ala256Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.616G>A
  hgvsp: ENSP00000421934.2:p.Ala206Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1066G>A
  hgvsp: ENSP00000434516.1:p.Ala356Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.616G>A
  hgvsp: ENSP00000433935.1:p.Ala206Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.502G>A
  hgvsp: ENSP00000442709.1:p.Ala168Thr
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala356Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-104714950-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714950
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714950
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.966A>G
  hgvsp: ENST00000427956.1:c.966A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.918A>G
  hgvsp: ENST00000378070.4:c.918A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.621A>G
  hgvsp: ENST00000527688.1:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.771A>G
  hgvsp: ENST00000542918.1:c.771A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.621A>G
  hgvsp: ENST00000354940.6:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.507A>G
  hgvsp: ENST00000529546.1:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4165A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.753A>G
  hgvsp: ENST00000397736.2:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.828A>G
  hgvsp: ENST00000526950.1:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.621A>G
  hgvsp: ENST00000503506.2:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.753A>G
  hgvsp: ENST00000526390.1:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1071A>G
  hgvsp: ENST00000525566.1:c.1071A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.621A>G
  hgvsp: ENST00000524698.1:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.777A>G
  hgvsp: ENST00000388854.3:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.507A>G
  hgvsp: ENST00000540716.1:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.777A>G
  hgvsp: ENST00000526691.1:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1071A>G
  hgvsp: ENST00000429002.2:c.1071A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly357Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

12-104714959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714959
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714959
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.786T>C
  hgvsp: ENST00000388854.3:c.786T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.762T>C
  hgvsp: ENST00000526390.1:c.762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.837T>C
  hgvsp: ENST00000526950.1:c.837T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.975T>C
  hgvsp: ENST00000427956.1:c.975T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.927T>C
  hgvsp: ENST00000378070.4:c.927T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.630T>C
  hgvsp: ENST00000524698.1:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.786T>C
  hgvsp: ENST00000526691.1:c.786T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.762T>C
  hgvsp: ENST00000397736.2:c.762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.516T>C
  hgvsp: ENST00000529546.1:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.630T>C
  hgvsp: ENST00000527688.1:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1080T>C
  hgvsp: ENST00000525566.1:c.1080T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.630T>C
  hgvsp: ENST00000503506.2:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.630T>C
  hgvsp: ENST00000354940.6:c.630T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4156T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1080T>C
  hgvsp: ENST00000429002.2:c.1080T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.516T>C
  hgvsp: ENST00000540716.1:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.780T>C
  hgvsp: ENST00000542918.1:c.780T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala360Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-104714967-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714967
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714967
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.935G>T
  hgvsp: ENSP00000367310.4:p.Gly312Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1088G>T
  hgvsp: ENSP00000412045.2:p.Gly363Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.638G>T
  hgvsp: ENSP00000421934.2:p.Gly213Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.524G>T
  hgvsp: ENSP00000434919.1:p.Gly175Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.794G>T
  hgvsp: ENSP00000373506.3:p.Gly265Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.770G>T
  hgvsp: ENSP00000380844.2:p.Gly257Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.638G>T
  hgvsp: ENSP00000433425.1:p.Gly213Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.845G>T
  hgvsp: ENSP00000432812.1:p.Gly282Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1088G>T
  hgvsp: ENSP00000434516.1:p.Gly363Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.638G>T
  hgvsp: ENSP00000347020.6:p.Gly213Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.770G>T
  hgvsp: ENSP00000435123.1:p.Gly257Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.638G>T
  hgvsp: ENSP00000433935.1:p.Gly213Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.788G>T
  hgvsp: ENSP00000440978.1:p.Gly263Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.524G>T
  hgvsp: ENSP00000442709.1:p.Gly175Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.794G>T
  hgvsp: ENSP00000435929.1:p.Gly265Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.983G>T
  hgvsp: ENSP00000393328.1:p.Gly328Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4148G>T
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly363Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-104714974-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714974
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714974
    reference: chr 12
allele count: 72
allele frequency: 5.961745466589385e-4
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.645C>A
  hgvsp: ENSP00000433935.1:p.Asp215Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.990C>A
  hgvsp: ENSP00000393328.1:p.Asp330Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.801C>A
  hgvsp: ENSP00000373506.3:p.Asp267Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1095C>A
  hgvsp: ENSP00000412045.2:p.Asp365Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.777C>A
  hgvsp: ENSP00000435123.1:p.Asp259Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.645C>A
  hgvsp: ENSP00000347020.6:p.Asp215Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.795C>A
  hgvsp: ENSP00000440978.1:p.Asp265Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4141C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.531C>A
  hgvsp: ENSP00000434919.1:p.Asp177Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.942C>A
  hgvsp: ENSP00000367310.4:p.Asp314Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.852C>A
  hgvsp: ENSP00000432812.1:p.Asp284Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1095C>A
  hgvsp: ENSP00000434516.1:p.Asp365Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.645C>A
  hgvsp: ENSP00000421934.2:p.Asp215Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.801C>A
  hgvsp: ENSP00000435929.1:p.Asp267Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.777C>A
  hgvsp: ENSP00000380844.2:p.Asp259Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.531C>A
  hgvsp: ENSP00000442709.1:p.Asp177Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.645C>A
  hgvsp: ENSP00000433425.1:p.Asp215Glu
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp365Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

12-104714974-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714974
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714974
    reference: chr 12
allele count: 5
allele frequency: 4.140101018464851e-5
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.795C>T
  hgvsp: ENST00000542918.1:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.645C>T
  hgvsp: ENST00000503506.2:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.942C>T
  hgvsp: ENST00000378070.4:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4141C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.801C>T
  hgvsp: ENST00000388854.3:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1095C>T
  hgvsp: ENST00000525566.1:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.645C>T
  hgvsp: ENST00000524698.1:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.777C>T
  hgvsp: ENST00000526390.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.852C>T
  hgvsp: ENST00000526950.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.531C>T
  hgvsp: ENST00000529546.1:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.777C>T
  hgvsp: ENST00000397736.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.531C>T
  hgvsp: ENST00000540716.1:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.801C>T
  hgvsp: ENST00000526691.1:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1095C>T
  hgvsp: ENST00000429002.2:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.645C>T
  hgvsp: ENST00000527688.1:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.990C>T
  hgvsp: ENST00000427956.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.645C>T
  hgvsp: ENST00000354940.6:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp365Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

12-104714975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714975
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714975
    reference: chr 12
allele count: 8
allele frequency: 6.624161629543761e-5
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.802G>A
  hgvsp: ENSP00000373506.3:p.Val268Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.802G>A
  hgvsp: ENSP00000435929.1:p.Val268Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.853G>A
  hgvsp: ENSP00000432812.1:p.Val285Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.646G>A
  hgvsp: ENSP00000347020.6:p.Val216Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.991G>A
  hgvsp: ENSP00000393328.1:p.Val331Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.778G>A
  hgvsp: ENSP00000435123.1:p.Val260Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4140G>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.646G>A
  hgvsp: ENSP00000433425.1:p.Val216Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1096G>A
  hgvsp: ENSP00000412045.2:p.Val366Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.943G>A
  hgvsp: ENSP00000367310.4:p.Val315Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.532G>A
  hgvsp: ENSP00000434919.1:p.Val178Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.646G>A
  hgvsp: ENSP00000421934.2:p.Val216Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.796G>A
  hgvsp: ENSP00000440978.1:p.Val266Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.532G>A
  hgvsp: ENSP00000442709.1:p.Val178Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.778G>A
  hgvsp: ENSP00000380844.2:p.Val260Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.646G>A
  hgvsp: ENSP00000433935.1:p.Val216Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1096G>A
  hgvsp: ENSP00000434516.1:p.Val366Ile
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val366Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

12-104714977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714977
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714977
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.855C>T
  hgvsp: ENST00000526950.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.534C>T
  hgvsp: ENST00000540716.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.945C>T
  hgvsp: ENST00000378070.4:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.780C>T
  hgvsp: ENST00000526390.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.804C>T
  hgvsp: ENST00000526691.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1098C>T
  hgvsp: ENST00000429002.2:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.993C>T
  hgvsp: ENST00000427956.1:c.993C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1098C>T
  hgvsp: ENST00000525566.1:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.534C>T
  hgvsp: ENST00000529546.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.804C>T
  hgvsp: ENST00000388854.3:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4138C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.780C>T
  hgvsp: ENST00000397736.2:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.648C>T
  hgvsp: ENST00000524698.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.798C>T
  hgvsp: ENST00000542918.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.648C>T
  hgvsp: ENST00000503506.2:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.648C>T
  hgvsp: ENST00000354940.6:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.648C>T
  hgvsp: ENST00000527688.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val366Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

12-104714985-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714985
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714985
    reference: chr 12
allele count: 3
allele frequency: 2.48406061107891e-5
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.656T>C
  hgvsp: ENSP00000433425.1:p.Met219Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.656T>C
  hgvsp: ENSP00000347020.6:p.Met219Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.788T>C
  hgvsp: ENSP00000435123.1:p.Met263Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.812T>C
  hgvsp: ENSP00000435929.1:p.Met271Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.542T>C
  hgvsp: ENSP00000442709.1:p.Met181Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.812T>C
  hgvsp: ENSP00000373506.3:p.Met271Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4130T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.953T>C
  hgvsp: ENSP00000367310.4:p.Met318Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.863T>C
  hgvsp: ENSP00000432812.1:p.Met288Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.788T>C
  hgvsp: ENSP00000380844.2:p.Met263Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.656T>C
  hgvsp: ENSP00000421934.2:p.Met219Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.542T>C
  hgvsp: ENSP00000434919.1:p.Met181Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1106T>C
  hgvsp: ENSP00000412045.2:p.Met369Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1106T>C
  hgvsp: ENSP00000434516.1:p.Met369Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.806T>C
  hgvsp: ENSP00000440978.1:p.Met269Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1001T>C
  hgvsp: ENSP00000393328.1:p.Met334Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.656T>C
  hgvsp: ENSP00000433935.1:p.Met219Thr
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met369Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

12-104714988-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104714988
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104714988
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1004T>A
  hgvsp: ENSP00000393328.1:p.Val335Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4127T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.815T>A
  hgvsp: ENSP00000435929.1:p.Val272Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.866T>A
  hgvsp: ENSP00000432812.1:p.Val289Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.815T>A
  hgvsp: ENSP00000373506.3:p.Val272Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1109T>A
  hgvsp: ENSP00000412045.2:p.Val370Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.545T>A
  hgvsp: ENSP00000442709.1:p.Val182Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1109T>A
  hgvsp: ENSP00000434516.1:p.Val370Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.791T>A
  hgvsp: ENSP00000435123.1:p.Val264Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.956T>A
  hgvsp: ENSP00000367310.4:p.Val319Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.545T>A
  hgvsp: ENSP00000434919.1:p.Val182Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.659T>A
  hgvsp: ENSP00000347020.6:p.Val220Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.791T>A
  hgvsp: ENSP00000380844.2:p.Val264Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.659T>A
  hgvsp: ENSP00000433935.1:p.Val220Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.659T>A
  hgvsp: ENSP00000421934.2:p.Val220Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.809T>A
  hgvsp: ENSP00000440978.1:p.Val270Asp
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.659T>A
  hgvsp: ENSP00000433425.1:p.Val220Asp
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val370Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

12-104715001-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715001
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715001
    reference: chr 12
allele count: 4
allele frequency: 3.312025966283576e-5
allele num: 120772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.828T>A
  hgvsp: ENST00000388854.3:c.828T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.672T>A
  hgvsp: ENST00000527688.1:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.879T>A
  hgvsp: ENST00000526950.1:c.879T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1017T>A
  hgvsp: ENST00000427956.1:c.1017T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.672T>A
  hgvsp: ENST00000354940.6:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.828T>A
  hgvsp: ENST00000526691.1:c.828T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4114T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.672T>A
  hgvsp: ENST00000503506.2:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1122T>A
  hgvsp: ENST00000525566.1:c.1122T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.822T>A
  hgvsp: ENST00000542918.1:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1122T>A
  hgvsp: ENST00000429002.2:c.1122T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.969T>A
  hgvsp: ENST00000378070.4:c.969T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.672T>A
  hgvsp: ENST00000524698.1:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.558T>A
  hgvsp: ENST00000529546.1:c.558T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.558T>A
  hgvsp: ENST00000540716.1:c.558T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.804T>A
  hgvsp: ENST00000526390.1:c.804T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.804T>A
  hgvsp: ENST00000397736.2:c.804T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu374Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

12-104715004-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715004
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715004
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.675T>C
  hgvsp: ENST00000354940.6:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1125T>C
  hgvsp: ENST00000429002.2:c.1125T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.561T>C
  hgvsp: ENST00000540716.1:c.561T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.675T>C
  hgvsp: ENST00000524698.1:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.831T>C
  hgvsp: ENST00000526691.1:c.831T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.825T>C
  hgvsp: ENST00000542918.1:c.825T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.807T>C
  hgvsp: ENST00000526390.1:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.675T>C
  hgvsp: ENST00000503506.2:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.972T>C
  hgvsp: ENST00000378070.4:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.675T>C
  hgvsp: ENST00000527688.1:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.831T>C
  hgvsp: ENST00000388854.3:c.831T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.882T>C
  hgvsp: ENST00000526950.1:c.882T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1020T>C
  hgvsp: ENST00000427956.1:c.1020T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4111T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.561T>C
  hgvsp: ENST00000529546.1:c.561T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1125T>C
  hgvsp: ENST00000525566.1:c.1125T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.807T>C
  hgvsp: ENST00000397736.2:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu375Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

12-104715005-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715005
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715005
    reference: chr 12
allele count: 4
allele frequency: 3.31208081477188e-5
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.808A>G
  hgvsp: ENSP00000380844.2:p.Arg270Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.676A>G
  hgvsp: ENSP00000433425.1:p.Arg226Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.883A>G
  hgvsp: ENSP00000432812.1:p.Arg295Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.973A>G
  hgvsp: ENSP00000367310.4:p.Arg325Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.832A>G
  hgvsp: ENSP00000435929.1:p.Arg278Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.562A>G
  hgvsp: ENSP00000434919.1:p.Arg188Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4110A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.826A>G
  hgvsp: ENSP00000440978.1:p.Arg276Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.832A>G
  hgvsp: ENSP00000373506.3:p.Arg278Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1126A>G
  hgvsp: ENSP00000434516.1:p.Arg376Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1126A>G
  hgvsp: ENSP00000412045.2:p.Arg376Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.676A>G
  hgvsp: ENSP00000433935.1:p.Arg226Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1021A>G
  hgvsp: ENSP00000393328.1:p.Arg341Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.808A>G
  hgvsp: ENSP00000435123.1:p.Arg270Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.676A>G
  hgvsp: ENSP00000421934.2:p.Arg226Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.562A>G
  hgvsp: ENSP00000442709.1:p.Arg188Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.676A>G
  hgvsp: ENSP00000347020.6:p.Arg226Gly
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg376Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-104715008-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715008
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715008
    reference: chr 12
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.679G>T
  hgvsp: ENSP00000421934.2:p.Gly227Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.976G>T
  hgvsp: ENSP00000367310.4:p.Gly326Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.886G>T
  hgvsp: ENSP00000432812.1:p.Gly296Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4107G>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.679G>T
  hgvsp: ENSP00000433425.1:p.Gly227Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.835G>T
  hgvsp: ENSP00000435929.1:p.Gly279Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1129G>T
  hgvsp: ENSP00000412045.2:p.Gly377Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.565G>T
  hgvsp: ENSP00000442709.1:p.Gly189Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.811G>T
  hgvsp: ENSP00000435123.1:p.Gly271Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.835G>T
  hgvsp: ENSP00000373506.3:p.Gly279Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.811G>T
  hgvsp: ENSP00000380844.2:p.Gly271Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.829G>T
  hgvsp: ENSP00000440978.1:p.Gly277Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1129G>T
  hgvsp: ENSP00000434516.1:p.Gly377Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.679G>T
  hgvsp: ENSP00000433935.1:p.Gly227Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1024G>T
  hgvsp: ENSP00000393328.1:p.Gly342Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.679G>T
  hgvsp: ENSP00000347020.6:p.Gly227Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.565G>T
  hgvsp: ENSP00000434919.1:p.Gly189Ter
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly377Ter
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff

12-104715017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715017
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715017
    reference: chr 12
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.688C>T
  hgvsp: ENSP00000421934.2:p.Gln230Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.985C>T
  hgvsp: ENSP00000367310.4:p.Gln329Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.844C>T
  hgvsp: ENSP00000373506.3:p.Gln282Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.574C>T
  hgvsp: ENSP00000442709.1:p.Gln192Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.688C>T
  hgvsp: ENSP00000347020.6:p.Gln230Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.688C>T
  hgvsp: ENSP00000433935.1:p.Gln230Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.688C>T
  hgvsp: ENSP00000433425.1:p.Gln230Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.574C>T
  hgvsp: ENSP00000434919.1:p.Gln192Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1138C>T
  hgvsp: ENSP00000412045.2:p.Gln380Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1033C>T
  hgvsp: ENSP00000393328.1:p.Gln345Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4098C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.844C>T
  hgvsp: ENSP00000435929.1:p.Gln282Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.838C>T
  hgvsp: ENSP00000440978.1:p.Gln280Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.895C>T
  hgvsp: ENSP00000432812.1:p.Gln299Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1138C>T
  hgvsp: ENSP00000434516.1:p.Gln380Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.820C>T
  hgvsp: ENSP00000435123.1:p.Gln274Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.820C>T
  hgvsp: ENSP00000380844.2:p.Gln274Ter
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln380Ter
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-104715023-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715023
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715023
    reference: chr 12
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.694A>C
  hgvsp: ENSP00000347020.6:p.Met232Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.580A>C
  hgvsp: ENSP00000442709.1:p.Met194Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.826A>C
  hgvsp: ENSP00000380844.2:p.Met276Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.901A>C
  hgvsp: ENSP00000432812.1:p.Met301Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.826A>C
  hgvsp: ENSP00000435123.1:p.Met276Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.850A>C
  hgvsp: ENSP00000373506.3:p.Met284Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.694A>C
  hgvsp: ENSP00000421934.2:p.Met232Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1039A>C
  hgvsp: ENSP00000393328.1:p.Met347Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.694A>C
  hgvsp: ENSP00000433935.1:p.Met232Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.580A>C
  hgvsp: ENSP00000434919.1:p.Met194Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.850A>C
  hgvsp: ENSP00000435929.1:p.Met284Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.694A>C
  hgvsp: ENSP00000433425.1:p.Met232Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.991A>C
  hgvsp: ENSP00000367310.4:p.Met331Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1144A>C
  hgvsp: ENSP00000412045.2:p.Met382Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.844A>C
  hgvsp: ENSP00000440978.1:p.Met282Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4092A>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1144A>C
  hgvsp: ENSP00000434516.1:p.Met382Leu
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met382Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

12-104715023-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715023
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715023
    reference: chr 12
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.850A>T
  hgvsp: ENSP00000435929.1:p.Met284Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.991A>T
  hgvsp: ENSP00000367310.4:p.Met331Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.694A>T
  hgvsp: ENSP00000433935.1:p.Met232Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.901A>T
  hgvsp: ENSP00000432812.1:p.Met301Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.580A>T
  hgvsp: ENSP00000434919.1:p.Met194Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.850A>T
  hgvsp: ENSP00000373506.3:p.Met284Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1144A>T
  hgvsp: ENSP00000412045.2:p.Met382Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1144A>T
  hgvsp: ENSP00000434516.1:p.Met382Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.826A>T
  hgvsp: ENSP00000380844.2:p.Met276Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1039A>T
  hgvsp: ENSP00000393328.1:p.Met347Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.694A>T
  hgvsp: ENSP00000433425.1:p.Met232Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.844A>T
  hgvsp: ENSP00000440978.1:p.Met282Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.694A>T
  hgvsp: ENSP00000421934.2:p.Met232Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.826A>T
  hgvsp: ENSP00000435123.1:p.Met276Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.580A>T
  hgvsp: ENSP00000442709.1:p.Met194Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.694A>T
  hgvsp: ENSP00000347020.6:p.Met232Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4092A>T
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13379
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met382Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

12-104715031-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715031
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715031
    reference: chr 12
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1047C>G
  hgvsp: ENSP00000393328.1:p.Asn349Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.702C>G
  hgvsp: ENSP00000347020.6:p.Asn234Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1152C>G
  hgvsp: ENSP00000412045.2:p.Asn384Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.588C>G
  hgvsp: ENSP00000434919.1:p.Asn196Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.702C>G
  hgvsp: ENSP00000433425.1:p.Asn234Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1152C>G
  hgvsp: ENSP00000434516.1:p.Asn384Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.702C>G
  hgvsp: ENSP00000421934.2:p.Asn234Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.999C>G
  hgvsp: ENSP00000367310.4:p.Asn333Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.834C>G
  hgvsp: ENSP00000435123.1:p.Asn278Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.588C>G
  hgvsp: ENSP00000442709.1:p.Asn196Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.852C>G
  hgvsp: ENSP00000440978.1:p.Asn284Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.834C>G
  hgvsp: ENSP00000380844.2:p.Asn278Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.858C>G
  hgvsp: ENSP00000373506.3:p.Asn286Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.858C>G
  hgvsp: ENSP00000435929.1:p.Asn286Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.702C>G
  hgvsp: ENSP00000433935.1:p.Asn234Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4084C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.909C>G
  hgvsp: ENSP00000432812.1:p.Asn303Lys
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn384Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

12-104715031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715031
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715031
    reference: chr 12
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1152C>T
  hgvsp: ENST00000429002.2:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.858C>T
  hgvsp: ENST00000388854.3:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1152C>T
  hgvsp: ENST00000525566.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.702C>T
  hgvsp: ENST00000527688.1:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.702C>T
  hgvsp: ENST00000503506.2:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.858C>T
  hgvsp: ENST00000526691.1:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.852C>T
  hgvsp: ENST00000542918.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.702C>T
  hgvsp: ENST00000524698.1:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.834C>T
  hgvsp: ENST00000397736.2:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.999C>T
  hgvsp: ENST00000378070.4:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4084C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.702C>T
  hgvsp: ENST00000354940.6:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.588C>T
  hgvsp: ENST00000529546.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1047C>T
  hgvsp: ENST00000427956.1:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.834C>T
  hgvsp: ENST00000526390.1:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.909C>T
  hgvsp: ENST00000526950.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.588C>T
  hgvsp: ENST00000540716.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn384Asn
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

12-104715040-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715040
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715040
    reference: chr 12
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.711T>A
  hgvsp: ENST00000354940.6:c.711T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1161T>A
  hgvsp: ENST00000525566.1:c.1161T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1056T>A
  hgvsp: ENST00000427956.1:c.1056T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1161T>A
  hgvsp: ENST00000429002.2:c.1161T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.861T>A
  hgvsp: ENST00000542918.1:c.861T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4075T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.711T>A
  hgvsp: ENST00000524698.1:c.711T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.867T>A
  hgvsp: ENST00000526691.1:c.867T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.843T>A
  hgvsp: ENST00000526390.1:c.843T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.867T>A
  hgvsp: ENST00000388854.3:c.867T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1008T>A
  hgvsp: ENST00000378070.4:c.1008T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.843T>A
  hgvsp: ENST00000397736.2:c.843T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.597T>A
  hgvsp: ENST00000529546.1:c.597T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.918T>A
  hgvsp: ENST00000526950.1:c.918T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.711T>A
  hgvsp: ENST00000527688.1:c.711T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.597T>A
  hgvsp: ENST00000540716.1:c.597T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.711T>A
  hgvsp: ENST00000503506.2:c.711T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly387Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS

12-104715042-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715042
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715042
    reference: chr 12
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1010A>G
  hgvsp: ENSP00000367310.4:p.Glu337Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.713A>G
  hgvsp: ENSP00000433935.1:p.Glu238Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.599A>G
  hgvsp: ENSP00000442709.1:p.Glu200Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.863A>G
  hgvsp: ENSP00000440978.1:p.Glu288Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.869A>G
  hgvsp: ENSP00000435929.1:p.Glu290Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.845A>G
  hgvsp: ENSP00000380844.2:p.Glu282Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.713A>G
  hgvsp: ENSP00000347020.6:p.Glu238Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.920A>G
  hgvsp: ENSP00000432812.1:p.Glu307Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1163A>G
  hgvsp: ENSP00000412045.2:p.Glu388Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.713A>G
  hgvsp: ENSP00000433425.1:p.Glu238Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1058A>G
  hgvsp: ENSP00000393328.1:p.Glu353Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.599A>G
  hgvsp: ENSP00000434919.1:p.Glu200Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1163A>G
  hgvsp: ENSP00000434516.1:p.Glu388Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.869A>G
  hgvsp: ENSP00000373506.3:p.Glu290Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.845A>G
  hgvsp: ENSP00000435123.1:p.Glu282Gly
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4073A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.713A>G
  hgvsp: ENSP00000421934.2:p.Glu238Gly
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu388Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

12-104715057-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715057
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715057
    reference: chr 12
allele count: 2
allele frequency: 1.656150113446283e-5
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1025A>G
  hgvsp: ENSP00000367310.4:p.His342Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.884A>G
  hgvsp: ENSP00000435929.1:p.His295Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1178A>G
  hgvsp: ENSP00000434516.1:p.His393Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.860A>G
  hgvsp: ENSP00000435123.1:p.His287Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1178A>G
  hgvsp: ENSP00000412045.2:p.His393Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.614A>G
  hgvsp: ENSP00000434919.1:p.His205Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.935A>G
  hgvsp: ENSP00000432812.1:p.His312Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.860A>G
  hgvsp: ENSP00000380844.2:p.His287Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.728A>G
  hgvsp: ENSP00000347020.6:p.His243Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.728A>G
  hgvsp: ENSP00000433425.1:p.His243Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1073A>G
  hgvsp: ENSP00000393328.1:p.His358Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.884A>G
  hgvsp: ENSP00000373506.3:p.His295Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4058A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.614A>G
  hgvsp: ENSP00000442709.1:p.His205Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.878A>G
  hgvsp: ENSP00000440978.1:p.His293Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.728A>G
  hgvsp: ENSP00000433935.1:p.His243Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.728A>G
  hgvsp: ENSP00000421934.2:p.His243Arg
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His393Arg
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

12-104715071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715071
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715071
    reference: chr 12
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.874A>G
  hgvsp: ENSP00000380844.2:p.Ile292Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.742A>G
  hgvsp: ENSP00000433425.1:p.Ile248Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.742A>G
  hgvsp: ENSP00000433935.1:p.Ile248Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.628A>G
  hgvsp: ENSP00000434919.1:p.Ile210Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1039A>G
  hgvsp: ENSP00000367310.4:p.Ile347Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.898A>G
  hgvsp: ENSP00000373506.3:p.Ile300Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.874A>G
  hgvsp: ENSP00000435123.1:p.Ile292Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.949A>G
  hgvsp: ENSP00000432812.1:p.Ile317Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4044A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.898A>G
  hgvsp: ENSP00000435929.1:p.Ile300Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.892A>G
  hgvsp: ENSP00000440978.1:p.Ile298Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.742A>G
  hgvsp: ENSP00000347020.6:p.Ile248Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.742A>G
  hgvsp: ENSP00000421934.2:p.Ile248Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1192A>G
  hgvsp: ENSP00000412045.2:p.Ile398Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1087A>G
  hgvsp: ENSP00000393328.1:p.Ile363Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.628A>G
  hgvsp: ENSP00000442709.1:p.Ile210Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1192A>G
  hgvsp: ENSP00000434516.1:p.Ile398Val
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile398Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

12-104715082-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715082
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715082
    reference: chr 12
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.909C>G
  hgvsp: ENSP00000373506.3:p.Phe303Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1098C>G
  hgvsp: ENSP00000393328.1:p.Phe366Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.639C>G
  hgvsp: ENSP00000434919.1:p.Phe213Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.909C>G
  hgvsp: ENSP00000435929.1:p.Phe303Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1203C>G
  hgvsp: ENSP00000434516.1:p.Phe401Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1050C>G
  hgvsp: ENSP00000367310.4:p.Phe350Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.753C>G
  hgvsp: ENSP00000347020.6:p.Phe251Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.960C>G
  hgvsp: ENSP00000432812.1:p.Phe320Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.639C>G
  hgvsp: ENSP00000442709.1:p.Phe213Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.885C>G
  hgvsp: ENSP00000380844.2:p.Phe295Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.885C>G
  hgvsp: ENSP00000435123.1:p.Phe295Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.753C>G
  hgvsp: ENSP00000433425.1:p.Phe251Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1203C>G
  hgvsp: ENSP00000412045.2:p.Phe401Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.753C>G
  hgvsp: ENSP00000433935.1:p.Phe251Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.753C>G
  hgvsp: ENSP00000421934.2:p.Phe251Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.903C>G
  hgvsp: ENSP00000440978.1:p.Phe301Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4033C>G
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe401Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

12-104715082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715082
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715082
    reference: chr 12
allele count: 13
allele frequency: 1.080577859790867e-4
allele num: 120306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.903C>T
  hgvsp: ENST00000542918.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1203C>T
  hgvsp: ENST00000525566.1:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.960C>T
  hgvsp: ENST00000526950.1:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1050C>T
  hgvsp: ENST00000378070.4:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.753C>T
  hgvsp: ENST00000524698.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.753C>T
  hgvsp: ENST00000503506.2:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1203C>T
  hgvsp: ENST00000429002.2:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.909C>T
  hgvsp: ENST00000388854.3:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.639C>T
  hgvsp: ENST00000540716.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4033C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.639C>T
  hgvsp: ENST00000529546.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1098C>T
  hgvsp: ENST00000427956.1:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.753C>T
  hgvsp: ENST00000354940.6:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.885C>T
  hgvsp: ENST00000526390.1:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.909C>T
  hgvsp: ENST00000526691.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.753C>T
  hgvsp: ENST00000527688.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.885C>T
  hgvsp: ENST00000397736.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Phe401Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

12-104715083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715083
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715083
    reference: chr 12
allele count: 44
allele frequency: 3.659408839135714e-4
allele num: 120238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.910G>A
  hgvsp: ENSP00000373506.3:p.Val304Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.886G>A
  hgvsp: ENSP00000435123.1:p.Val296Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.754G>A
  hgvsp: ENSP00000433425.1:p.Val252Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.910G>A
  hgvsp: ENSP00000435929.1:p.Val304Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1204G>A
  hgvsp: ENSP00000412045.2:p.Val402Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4032G>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1051G>A
  hgvsp: ENSP00000367310.4:p.Val351Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.754G>A
  hgvsp: ENSP00000347020.6:p.Val252Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.886G>A
  hgvsp: ENSP00000380844.2:p.Val296Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.640G>A
  hgvsp: ENSP00000434919.1:p.Val214Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.754G>A
  hgvsp: ENSP00000421934.2:p.Val252Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.961G>A
  hgvsp: ENSP00000432812.1:p.Val321Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.640G>A
  hgvsp: ENSP00000442709.1:p.Val214Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1099G>A
  hgvsp: ENSP00000393328.1:p.Val367Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.904G>A
  hgvsp: ENSP00000440978.1:p.Val302Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1204G>A
  hgvsp: ENSP00000434516.1:p.Val402Ile
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.754G>A
  hgvsp: ENSP00000433935.1:p.Val252Ile
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Val402Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

12-104715109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715109
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715109
    reference: chr 12
allele count: 1
allele frequency: 8.674832575731289e-6
allele num: 115276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1110+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.897+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1062+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.765+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.651+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.921+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.972+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-4006C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.897+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.651+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1215+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1215+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.921+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.765+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.765+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.915+15C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.765+15C>T
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-104715128-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715128
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715128
    reference: chr 12
allele count: 1
allele frequency: 8.943743851176102e-6
allele num: 111810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.765+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1215+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.897+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.915+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.651+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.897+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.651+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.921+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.972+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1062+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.921+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.765+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-3987A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.765+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1215+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1110+34A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.765+34A>G
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

12-104715130-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104715130
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104715130
    reference: chr 12
allele count: 1
allele frequency: 9.006737039305401e-6
allele num: 111028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.972+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.765+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1215+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.921+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-3985A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1062+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.915+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1215+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.897+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.651+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.921+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.765+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.765+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1110+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.651+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.897+36A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.765+36A>G
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

12-104719068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719068
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719068
    reference: chr 12
allele count: 1
allele frequency: 1.459726155373252e-5
allele num: 68506
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-47C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-47C>T
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16236
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-104719076-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719076
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719075
    reference: chr 12
allele count: 2
allele frequency: 2.861066605630579e-5
allele num: 69904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-38delT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-38delT
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22094
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: AT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

12-104719078-G-GAGAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719078
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719082
    reference: chr 12
allele count: 2
allele frequency: 2.85926688397095e-5
allele num: 69948
alternate allele: GAGAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-37_898-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-37_766-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-37_973-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-37_652-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-37_922-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-37_1111-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-37_766-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-37_652-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-37_766-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-37_1063-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-37_898-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-37_1216-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-37_-96-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-37_922-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-37_916-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-37_1216-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-37_766-36insAGAA
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22223
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

12-104719080-CTTTATTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719080
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719073
    reference: chr 12
allele count: 2
allele frequency: 2.845759817871372e-5
allele num: 70280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-34_766-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-34_973-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-34_652-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-34_922-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-34_898-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-34_922-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-34_-96-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-34_652-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-34_916-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-34_766-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-34_1063-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-34_1216-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-34_766-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-34_1216-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-34_898-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-34_766-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-34_1111-28delTTTATTT
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22259
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: CTTTATTT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/12-104719088-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719088
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719089
    reference: chr 12
allele count: 2
allele frequency: 2.757555702625193e-5
allele num: 72528
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-26dupA
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-26dupA
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22236
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-104719090-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719090
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719090
    reference: chr 12
allele count: 2
allele frequency: 2.707385748321421e-5
allele num: 73872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-25C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-25C>A
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21895
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

12-104719093-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719093
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719094
    reference: chr 12
allele count: 2
allele frequency: 2.631232732535193e-5
allele num: 76010
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-22_922-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-22_766-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-22_922-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-22_766-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-22_1063-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-22_898-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-22_973-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-22_1216-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-22_916-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-22_652-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-22_1111-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-22_-96-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-22_898-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-22_766-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-22_652-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-22_1216-21insG
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-22_766-21insG
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

12-104719094-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719094
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719095
    reference: chr 12
allele count: 2
allele frequency: 2.598414966870209e-5
allele num: 76970
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-21_766-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-21_916-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-21_652-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-21_922-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-21_1216-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-21_1063-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-21_766-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-21_922-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-21_1111-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-21_-96-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-21_1216-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-21_898-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-21_973-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-21_898-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-21_766-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-21_652-20insT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-21_766-20insT
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10701
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

12-104719098-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719098
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719099
    reference: chr 12
allele count: 1
allele frequency: 1.260652513741112e-5
allele num: 79324
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-14dupT
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-14dupT
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17863
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

12-104719098-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719098
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719098
    reference: chr 12
allele count: 3
allele frequency: 3.781957541223337e-5
allele num: 79324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-17C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-17C>G
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9448
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

12-104719107-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719107
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719107
    reference: chr 12
allele count: 7
allele frequency: 7.978299026647519e-5
allele num: 87738
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1216-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.766-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1111-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.766-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.652-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1063-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.766-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.922-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.973-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.922-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.766-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.916-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.652-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.898-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.898-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1216-8T>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-96-8T>A
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1216-8T>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

12-104719125-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719125
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719125
    reference: chr 12
allele count: 1
allele frequency: 9.800078400627205e-6
allele num: 102040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.662T>C
  hgvsp: ENSP00000442709.1:p.Ile221Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.776T>C
  hgvsp: ENSP00000421934.2:p.Ile259Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-86T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.776T>C
  hgvsp: ENSP00000347020.6:p.Ile259Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1226T>C
  hgvsp: ENSP00000412045.2:p.Ile409Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.662T>C
  hgvsp: ENSP00000434919.1:p.Ile221Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1226T>C
  hgvsp: ENSP00000434516.1:p.Ile409Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.932T>C
  hgvsp: ENSP00000373506.3:p.Ile311Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1073T>C
  hgvsp: ENSP00000367310.4:p.Ile358Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1121T>C
  hgvsp: ENSP00000393328.1:p.Ile374Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.776T>C
  hgvsp: ENSP00000433425.1:p.Ile259Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.932T>C
  hgvsp: ENSP00000435929.1:p.Ile311Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.983T>C
  hgvsp: ENSP00000432812.1:p.Ile328Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.776T>C
  hgvsp: ENSP00000433935.1:p.Ile259Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.926T>C
  hgvsp: ENSP00000440978.1:p.Ile309Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.908T>C
  hgvsp: ENSP00000380844.2:p.Ile303Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.908T>C
  hgvsp: ENSP00000435123.1:p.Ile303Thr
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile409Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

12-104719130-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719130
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719130
    reference: chr 12
allele count: 1
allele frequency: 9.568828584004747e-6
allele num: 104506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.931G>A
  hgvsp: ENSP00000440978.1:p.Ala311Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.988G>A
  hgvsp: ENSP00000432812.1:p.Ala330Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1231G>A
  hgvsp: ENSP00000412045.2:p.Ala411Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.781G>A
  hgvsp: ENSP00000421934.2:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.667G>A
  hgvsp: ENSP00000434919.1:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.937G>A
  hgvsp: ENSP00000435929.1:p.Ala313Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.781G>A
  hgvsp: ENSP00000347020.6:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1078G>A
  hgvsp: ENSP00000367310.4:p.Ala360Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.781G>A
  hgvsp: ENSP00000433425.1:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.937G>A
  hgvsp: ENSP00000373506.3:p.Ala313Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.913G>A
  hgvsp: ENSP00000435123.1:p.Ala305Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1126G>A
  hgvsp: ENSP00000393328.1:p.Ala376Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1231G>A
  hgvsp: ENSP00000434516.1:p.Ala411Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-81G>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.913G>A
  hgvsp: ENSP00000380844.2:p.Ala305Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.781G>A
  hgvsp: ENSP00000433935.1:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.667G>A
  hgvsp: ENSP00000442709.1:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala411Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

12-104719131-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719131
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719131
    reference: chr 12
allele count: 1
allele frequency: 9.54653937947494e-6
allele num: 104750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1079C>T
  hgvsp: ENSP00000367310.4:p.Ala360Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.989C>T
  hgvsp: ENSP00000432812.1:p.Ala330Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.668C>T
  hgvsp: ENSP00000434919.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1127C>T
  hgvsp: ENSP00000393328.1:p.Ala376Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.938C>T
  hgvsp: ENSP00000373506.3:p.Ala313Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.782C>T
  hgvsp: ENSP00000421934.2:p.Ala261Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.782C>T
  hgvsp: ENSP00000433935.1:p.Ala261Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.938C>T
  hgvsp: ENSP00000435929.1:p.Ala313Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1232C>T
  hgvsp: ENSP00000434516.1:p.Ala411Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.914C>T
  hgvsp: ENSP00000435123.1:p.Ala305Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.782C>T
  hgvsp: ENSP00000433425.1:p.Ala261Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1232C>T
  hgvsp: ENSP00000412045.2:p.Ala411Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-80C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.782C>T
  hgvsp: ENSP00000347020.6:p.Ala261Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.932C>T
  hgvsp: ENSP00000440978.1:p.Ala311Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.914C>T
  hgvsp: ENSP00000380844.2:p.Ala305Val
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.668C>T
  hgvsp: ENSP00000442709.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala411Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

12-104719132-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719132
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719132
    reference: chr 12
allele count: 1
allele frequency: 9.503535315137231e-6
allele num: 105224
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1233A>G
  hgvsp: ENST00000525566.1:c.1233A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.939A>G
  hgvsp: ENST00000526691.1:c.939A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.669A>G
  hgvsp: ENST00000540716.1:c.669A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.990A>G
  hgvsp: ENST00000526950.1:c.990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1080A>G
  hgvsp: ENST00000378070.4:c.1080A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-79A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.783A>G
  hgvsp: ENST00000524698.1:c.783A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1128A>G
  hgvsp: ENST00000427956.1:c.1128A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.783A>G
  hgvsp: ENST00000503506.2:c.783A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.783A>G
  hgvsp: ENST00000354940.6:c.783A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1233A>G
  hgvsp: ENST00000429002.2:c.1233A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.915A>G
  hgvsp: ENST00000397736.2:c.915A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.669A>G
  hgvsp: ENST00000529546.1:c.669A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.915A>G
  hgvsp: ENST00000526390.1:c.915A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.939A>G
  hgvsp: ENST00000388854.3:c.939A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.933A>G
  hgvsp: ENST00000542918.1:c.933A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.783A>G
  hgvsp: ENST00000527688.1:c.783A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala411Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

12-104719140-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719140
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719140
    reference: chr 12
allele count: 2
allele frequency: 1.871012404812244e-5
allele num: 106894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.677C>G
  hgvsp: ENSP00000434919.1:p.Pro226Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1136C>G
  hgvsp: ENSP00000393328.1:p.Pro379Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.791C>G
  hgvsp: ENSP00000421934.2:p.Pro264Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.677C>G
  hgvsp: ENSP00000442709.1:p.Pro226Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1088C>G
  hgvsp: ENSP00000367310.4:p.Pro363Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.923C>G
  hgvsp: ENSP00000380844.2:p.Pro308Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1241C>G
  hgvsp: ENSP00000412045.2:p.Pro414Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-71C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.947C>G
  hgvsp: ENSP00000435929.1:p.Pro316Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.791C>G
  hgvsp: ENSP00000433425.1:p.Pro264Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.998C>G
  hgvsp: ENSP00000432812.1:p.Pro333Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1241C>G
  hgvsp: ENSP00000434516.1:p.Pro414Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.791C>G
  hgvsp: ENSP00000433935.1:p.Pro264Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.941C>G
  hgvsp: ENSP00000440978.1:p.Pro314Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.947C>G
  hgvsp: ENSP00000373506.3:p.Pro316Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.791C>G
  hgvsp: ENSP00000347020.6:p.Pro264Arg
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.923C>G
  hgvsp: ENSP00000435123.1:p.Pro308Arg
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro414Arg
num of homozygotes: 1
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

12-104719145-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719145
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719145
    reference: chr 12
allele count: 1
allele frequency: 9.268527787046306e-6
allele num: 107892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.928C>T
  hgvsp: ENSP00000380844.2:p.Arg310Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.682C>T
  hgvsp: ENSP00000442709.1:p.Arg228Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.946C>T
  hgvsp: ENSP00000440978.1:p.Arg316Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1093C>T
  hgvsp: ENSP00000367310.4:p.Arg365Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.952C>T
  hgvsp: ENSP00000373506.3:p.Arg318Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1246C>T
  hgvsp: ENSP00000434516.1:p.Arg416Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.796C>T
  hgvsp: ENSP00000433935.1:p.Arg266Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1003C>T
  hgvsp: ENSP00000432812.1:p.Arg335Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.682C>T
  hgvsp: ENSP00000434919.1:p.Arg228Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-66C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1246C>T
  hgvsp: ENSP00000412045.2:p.Arg416Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.952C>T
  hgvsp: ENSP00000435929.1:p.Arg318Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.796C>T
  hgvsp: ENSP00000421934.2:p.Arg266Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1141C>T
  hgvsp: ENSP00000393328.1:p.Arg381Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.796C>T
  hgvsp: ENSP00000433425.1:p.Arg266Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.796C>T
  hgvsp: ENSP00000347020.6:p.Arg266Ter
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.928C>T
  hgvsp: ENSP00000435123.1:p.Arg310Ter
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg416Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

12-104719146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719146
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719146
    reference: chr 12
allele count: 3
allele frequency: 2.774900103596271e-5
allele num: 108112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.683G>A
  hgvsp: ENSP00000442709.1:p.Arg228Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-65G>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.929G>A
  hgvsp: ENSP00000435123.1:p.Arg310Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1094G>A
  hgvsp: ENSP00000367310.4:p.Arg365Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.953G>A
  hgvsp: ENSP00000373506.3:p.Arg318Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1247G>A
  hgvsp: ENSP00000412045.2:p.Arg416Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.953G>A
  hgvsp: ENSP00000435929.1:p.Arg318Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1247G>A
  hgvsp: ENSP00000434516.1:p.Arg416Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.683G>A
  hgvsp: ENSP00000434919.1:p.Arg228Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1004G>A
  hgvsp: ENSP00000432812.1:p.Arg335Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.797G>A
  hgvsp: ENSP00000433935.1:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1142G>A
  hgvsp: ENSP00000393328.1:p.Arg381Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.947G>A
  hgvsp: ENSP00000440978.1:p.Arg316Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.929G>A
  hgvsp: ENSP00000380844.2:p.Arg310Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.797G>A
  hgvsp: ENSP00000421934.2:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.797G>A
  hgvsp: ENSP00000433425.1:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.797G>A
  hgvsp: ENSP00000347020.6:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35834
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg416Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

12-104719152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719152
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719152
    reference: chr 12
allele count: 1
allele frequency: 9.183242419233382e-6
allele num: 108894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.803G>A
  hgvsp: ENSP00000347020.6:p.Arg268Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.935G>A
  hgvsp: ENSP00000380844.2:p.Arg312Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.959G>A
  hgvsp: ENSP00000435929.1:p.Arg320Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-59G>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.803G>A
  hgvsp: ENSP00000421934.2:p.Arg268Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.689G>A
  hgvsp: ENSP00000434919.1:p.Arg230Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1010G>A
  hgvsp: ENSP00000432812.1:p.Arg337Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.953G>A
  hgvsp: ENSP00000440978.1:p.Arg318Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.803G>A
  hgvsp: ENSP00000433425.1:p.Arg268Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1100G>A
  hgvsp: ENSP00000367310.4:p.Arg367Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1148G>A
  hgvsp: ENSP00000393328.1:p.Arg383Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.959G>A
  hgvsp: ENSP00000373506.3:p.Arg320Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1253G>A
  hgvsp: ENSP00000434516.1:p.Arg418Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.935G>A
  hgvsp: ENSP00000435123.1:p.Arg312Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1253G>A
  hgvsp: ENSP00000412045.2:p.Arg418Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.689G>A
  hgvsp: ENSP00000442709.1:p.Arg230Lys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.803G>A
  hgvsp: ENSP00000433935.1:p.Arg268Lys
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg418Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

12-104719154-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719154
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719154
    reference: chr 12
allele count: 1
allele frequency: 9.18526683200147e-6
allele num: 108870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1150G>C
  hgvsp: ENSP00000393328.1:p.Val384Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.961G>C
  hgvsp: ENSP00000373506.3:p.Val321Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.805G>C
  hgvsp: ENSP00000421934.2:p.Val269Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.961G>C
  hgvsp: ENSP00000435929.1:p.Val321Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.955G>C
  hgvsp: ENSP00000440978.1:p.Val319Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.691G>C
  hgvsp: ENSP00000434919.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1255G>C
  hgvsp: ENSP00000412045.2:p.Val419Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.937G>C
  hgvsp: ENSP00000380844.2:p.Val313Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.937G>C
  hgvsp: ENSP00000435123.1:p.Val313Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1012G>C
  hgvsp: ENSP00000432812.1:p.Val338Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.691G>C
  hgvsp: ENSP00000442709.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1255G>C
  hgvsp: ENSP00000434516.1:p.Val419Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1102G>C
  hgvsp: ENSP00000367310.4:p.Val368Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.805G>C
  hgvsp: ENSP00000433935.1:p.Val269Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-57G>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.805G>C
  hgvsp: ENSP00000347020.6:p.Val269Leu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.805G>C
  hgvsp: ENSP00000433425.1:p.Val269Leu
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val419Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

12-104719163-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719163
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719163
    reference: chr 12
allele count: 9
allele frequency: 8.308408109006314e-5
allele num: 108324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1021C>G
  hgvsp: ENSP00000432812.1:p.Gln341Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.700C>G
  hgvsp: ENSP00000434919.1:p.Gln234Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-48C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.946C>G
  hgvsp: ENSP00000380844.2:p.Gln316Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1264C>G
  hgvsp: ENSP00000412045.2:p.Gln422Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.970C>G
  hgvsp: ENSP00000435929.1:p.Gln324Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.970C>G
  hgvsp: ENSP00000373506.3:p.Gln324Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.964C>G
  hgvsp: ENSP00000440978.1:p.Gln322Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.814C>G
  hgvsp: ENSP00000433425.1:p.Gln272Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.946C>G
  hgvsp: ENSP00000435123.1:p.Gln316Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1264C>G
  hgvsp: ENSP00000434516.1:p.Gln422Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.700C>G
  hgvsp: ENSP00000442709.1:p.Gln234Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1159C>G
  hgvsp: ENSP00000393328.1:p.Gln387Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1111C>G
  hgvsp: ENSP00000367310.4:p.Gln371Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.814C>G
  hgvsp: ENSP00000421934.2:p.Gln272Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.814C>G
  hgvsp: ENSP00000347020.6:p.Gln272Glu
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.814C>G
  hgvsp: ENSP00000433935.1:p.Gln272Glu
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34736
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln422Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-104719173-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719173
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719173
    reference: chr 12
allele count: 1
allele frequency: 9.409285082519431e-6
allele num: 106278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1121A>C
  hgvsp: ENSP00000367310.4:p.Asn374Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.980A>C
  hgvsp: ENSP00000435929.1:p.Asn327Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1274A>C
  hgvsp: ENSP00000434516.1:p.Asn425Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.974A>C
  hgvsp: ENSP00000440978.1:p.Asn325Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.824A>C
  hgvsp: ENSP00000433935.1:p.Asn275Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1274A>C
  hgvsp: ENSP00000412045.2:p.Asn425Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-38A>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.824A>C
  hgvsp: ENSP00000433425.1:p.Asn275Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.980A>C
  hgvsp: ENSP00000373506.3:p.Asn327Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1031A>C
  hgvsp: ENSP00000432812.1:p.Asn344Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.710A>C
  hgvsp: ENSP00000434919.1:p.Asn237Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.956A>C
  hgvsp: ENSP00000435123.1:p.Asn319Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1169A>C
  hgvsp: ENSP00000393328.1:p.Asn390Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.710A>C
  hgvsp: ENSP00000442709.1:p.Asn237Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.824A>C
  hgvsp: ENSP00000347020.6:p.Asn275Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.956A>C
  hgvsp: ENSP00000380844.2:p.Asn319Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.824A>C
  hgvsp: ENSP00000421934.2:p.Asn275Thr
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn425Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

12-104719188-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719188
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719188
    reference: chr 12
allele count: 1
allele frequency: 9.816818172893802e-6
allele num: 101866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1046T>C
  hgvsp: ENSP00000432812.1:p.Ile349Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1184T>C
  hgvsp: ENSP00000393328.1:p.Ile395Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.971T>C
  hgvsp: ENSP00000380844.2:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1289T>C
  hgvsp: ENSP00000412045.2:p.Ile430Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.839T>C
  hgvsp: ENSP00000347020.6:p.Ile280Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-23T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.725T>C
  hgvsp: ENSP00000442709.1:p.Ile242Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.725T>C
  hgvsp: ENSP00000434919.1:p.Ile242Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.839T>C
  hgvsp: ENSP00000421934.2:p.Ile280Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.839T>C
  hgvsp: ENSP00000433935.1:p.Ile280Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1136T>C
  hgvsp: ENSP00000367310.4:p.Ile379Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.971T>C
  hgvsp: ENSP00000435123.1:p.Ile324Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.995T>C
  hgvsp: ENSP00000373506.3:p.Ile332Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.995T>C
  hgvsp: ENSP00000435929.1:p.Ile332Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.839T>C
  hgvsp: ENSP00000433425.1:p.Ile280Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1289T>C
  hgvsp: ENSP00000434516.1:p.Ile430Thr
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.989T>C
  hgvsp: ENSP00000440978.1:p.Ile330Thr
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile430Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP

12-104719200-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719200
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719200
    reference: chr 12
allele count: 1
allele frequency: 1.04110273601799e-5
allele num: 96052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.1007A>G
  hgvsp: ENSP00000435929.1:p.Tyr336Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.983A>G
  hgvsp: ENSP00000380844.2:p.Tyr328Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1148A>G
  hgvsp: ENSP00000367310.4:p.Tyr383Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1196A>G
  hgvsp: ENSP00000393328.1:p.Tyr399Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.851A>G
  hgvsp: ENSP00000433425.1:p.Tyr284Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.737A>G
  hgvsp: ENSP00000434919.1:p.Tyr246Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.1001A>G
  hgvsp: ENSP00000440978.1:p.Tyr334Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.1007A>G
  hgvsp: ENSP00000373506.3:p.Tyr336Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1058A>G
  hgvsp: ENSP00000432812.1:p.Tyr353Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1301A>G
  hgvsp: ENSP00000434516.1:p.Tyr434Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1301A>G
  hgvsp: ENSP00000412045.2:p.Tyr434Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.737A>G
  hgvsp: ENSP00000442709.1:p.Tyr246Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-11A>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.983A>G
  hgvsp: ENSP00000435123.1:p.Tyr328Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.851A>G
  hgvsp: ENSP00000421934.2:p.Tyr284Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.851A>G
  hgvsp: ENSP00000347020.6:p.Tyr284Cys
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.851A>G
  hgvsp: ENSP00000433935.1:p.Tyr284Cys
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr434Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

12-104719206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719206
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719206
    reference: chr 12
allele count: 14
allele frequency: 1.502242633645943e-4
allele num: 93194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.857C>T
  hgvsp: ENSP00000433935.1:p.Thr286Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.1007C>T
  hgvsp: ENSP00000440978.1:p.Thr336Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.989C>T
  hgvsp: ENSP00000380844.2:p.Thr330Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1154C>T
  hgvsp: ENSP00000367310.4:p.Thr385Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.743C>T
  hgvsp: ENSP00000442709.1:p.Thr248Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.857C>T
  hgvsp: ENSP00000421934.2:p.Thr286Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.1013C>T
  hgvsp: ENSP00000373506.3:p.Thr338Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1307C>T
  hgvsp: ENSP00000412045.2:p.Thr436Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.989C>T
  hgvsp: ENSP00000435123.1:p.Thr330Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.857C>T
  hgvsp: ENSP00000433425.1:p.Thr286Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1064C>T
  hgvsp: ENSP00000432812.1:p.Thr355Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1202C>T
  hgvsp: ENSP00000393328.1:p.Thr401Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.743C>T
  hgvsp: ENSP00000434919.1:p.Thr248Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1307C>T
  hgvsp: ENSP00000434516.1:p.Thr436Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.857C>T
  hgvsp: ENSP00000347020.6:p.Thr286Met
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.1013C>T
  hgvsp: ENSP00000435929.1:p.Thr338Met
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr436Met
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

12-104719207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719207
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719207
    reference: chr 12
allele count: 1
allele frequency: 1.092609588741751e-5
allele num: 91524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.858G>A
  hgvsp: ENST00000527688.1:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.744G>A
  hgvsp: ENST00000540716.1:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1065G>A
  hgvsp: ENST00000526950.1:c.1065G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.990G>A
  hgvsp: ENST00000397736.2:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1308G>A
  hgvsp: ENST00000525566.1:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1155G>A
  hgvsp: ENST00000378070.4:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1308G>A
  hgvsp: ENST00000429002.2:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.858G>A
  hgvsp: ENST00000524698.1:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.1014G>A
  hgvsp: ENST00000388854.3:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1203G>A
  hgvsp: ENST00000427956.1:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.1014G>A
  hgvsp: ENST00000526691.1:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.1008G>A
  hgvsp: ENST00000542918.1:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.744G>A
  hgvsp: ENST00000529546.1:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.858G>A
  hgvsp: ENST00000503506.2:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.990G>A
  hgvsp: ENST00000526390.1:c.990G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.858G>A
  hgvsp: ENST00000354940.6:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.1308G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

12-104719216-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719216
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719216
    reference: chr 12
allele count: 1
allele frequency: 1.146894210478026e-5
allele num: 87192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1065+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.858+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-4+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.1014+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.1008+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.744+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1308+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.990+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1203+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.858+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1308+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.990+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.858+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.1014+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1155+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.858+9T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.744+9T>C
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-104719221-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719221
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719221
    reference: chr 12
allele count: 1
allele frequency: 1.184020459873547e-5
allele num: 84458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1308+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.990+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1155+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.744+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1203+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.1014+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.858+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.744+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-4+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.1014+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.990+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.858+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1065+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.858+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.858+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.1008+14C>A
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1308+14C>A
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

12-104719226-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719226
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719226
    reference: chr 12
allele count: 4
allele frequency: 4.910988336402701e-5
allele num: 81450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.990+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1308+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.858+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-4+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.990+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1065+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1155+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.1008+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.1014+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.858+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.858+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.744+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1203+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.1014+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.744+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.858+19T>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1308+19T>G
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20938
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

12-104719232-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719232
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719232
    reference: chr 12
allele count: 1
allele frequency: 1.283960762159108e-5
allele num: 77884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.744+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.858+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1308+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.990+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.858+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.858+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-4+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.1008+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1308+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1155+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.1014+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.858+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1203+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1065+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.1014+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.990+25C>G
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.744+25C>G
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

12-104719234-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 104719234
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 104719234
    reference: chr 12
allele count: 40
allele frequency: 5.20697734964853e-4
allele num: 76820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433425
  ensembl transcript: ENST00000524698
  gene symbol: TXNRD1
  hgvsc: ENST00000524698.1:c.858+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000440978
  ensembl transcript: ENST00000542918
  gene symbol: TXNRD1
  hgvsc: ENST00000542918.1:c.1008+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435929
  ensembl transcript: ENST00000526691
  gene symbol: TXNRD1
  hgvsc: ENST00000526691.1:c.1014+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432812
  ensembl transcript: ENST00000526950
  gene symbol: TXNRD1
  hgvsc: ENST00000526950.1:c.1065+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000367310
  ensembl transcript: ENST00000378070
  gene symbol: TXNRD1
  hgvsc: ENST00000378070.4:c.1155+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000380844
  ensembl transcript: ENST00000397736
  gene symbol: TXNRD1
  hgvsc: ENST00000397736.2:c.990+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000412045
  ensembl transcript: ENST00000429002
  gene symbol: TXNRD1
  hgvsc: ENST00000429002.2:c.1308+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000435123
  ensembl transcript: ENST00000526390
  gene symbol: TXNRD1
  hgvsc: ENST00000526390.1:c.990+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434919
  ensembl transcript: ENST00000529546
  gene symbol: TXNRD1
  hgvsc: ENST00000529546.1:c.744+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000393328
  ensembl transcript: ENST00000427956
  gene symbol: TXNRD1
  hgvsc: ENST00000427956.1:c.1203+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000442709
  ensembl transcript: ENST00000540716
  gene symbol: TXNRD1
  hgvsc: ENST00000540716.1:c.744+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000421934
  ensembl transcript: ENST00000503506
  gene symbol: TXNRD1
  hgvsc: ENST00000503506.2:c.858+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000432273
  ensembl transcript: ENST00000529751
  gene symbol: TXNRD1
  hgvsc: ENST00000529751.1:c.-4+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000373506
  ensembl transcript: ENST00000388854
  gene symbol: TXNRD1
  hgvsc: ENST00000388854.3:c.1014+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000433935
  ensembl transcript: ENST00000527688
  gene symbol: TXNRD1
  hgvsc: ENST00000527688.1:c.858+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000434516
  ensembl transcript: ENST00000525566
  gene symbol: TXNRD1
  hgvsc: ENST00000525566.1:c.1308+27T>C
  variant of: http://identifiers.org/hgnc/12437
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198431
  ensembl protein: ENSP00000347020
  ensembl transcript: ENST00000354940
  gene symbol: TXNRD1
  hgvsc: ENST00000354940.6:c.858+27T>C
  variant of: http://identifiers.org/hgnc/12437
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17507
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30426
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13361
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1864
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8369
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 285
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.761e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

DP
type: SiteQuality
SIO_000300: 2.003522e6

QD
type: SiteQuality
SIO_000300: 1.261e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e-1

GenotypeDepth
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13361
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8370
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30426
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1864
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4565
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

FS
type: SiteQuality
SIO_000300: 2.753e0

QD
type: SiteQuality
SIO_000300: 1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.596e0

DP
type: SiteQuality
SIO_000300: 2.003443e6

GenotypeDepth
all individuals: 30428
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8370
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13360
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 285
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2542
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1863
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4565
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.101e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.325e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.74e-1

DP
type: SiteQuality
SIO_000300: 2.003606e6

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 221
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30431
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1863
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8369
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4563
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41835
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.003655e6

MQ
type: SiteQuality
SIO_000300: 5.923e1

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 3.194e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 1.416e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeDepth
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30431
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13361
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2542
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1861
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4561
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

FS
type: SiteQuality
SIO_000300: 2.799e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 2.003071e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.566e0

QD
type: SiteQuality
SIO_000300: 1.304e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30432
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2542
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1861
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4561
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.835e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

FS
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 2.003041e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.207e0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8370
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30432
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2542
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1860
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 13362
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4560
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.254e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 7.606e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.879e0

DP
type: SiteQuality
SIO_000300: 2.002992e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 318
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8371
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1870
bin: 9.75e1
variant carriers: 66

GenotypeDepth
all individuals: 256
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30429
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 9.75e1
variant carriers: 72

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 67
allele frequency: 6.835339726586411e-3
allele num: 9802
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.92e0

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 2.007753e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13359
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2540
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8371
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1870
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 532
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 927
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.007753e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.92e0

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 1.343e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2543
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 930
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30461
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8380
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13373
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1805
bin: 9.75e1
variant carriers: 7

GenotypeDepth
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4510
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.11500115928588e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

DP
type: SiteQuality
SIO_000300: 1.997053e6

MQ
type: SiteQuality
SIO_000300: 5.882e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.858e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.67e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.76e-1

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13374
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8381
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1798
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 3.297e0

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.255e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

VQSLOD
type: SiteQuality
SIO_000300: -4.195e-1

DP
type: SiteQuality
SIO_000300: 1.995657e6

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8381
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13375
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1797
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4503
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.236e1

FS
type: SiteQuality
SIO_000300: 1.243e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

DP
type: SiteQuality
SIO_000300: 1.995795e6

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30464
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8381
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4500
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.867e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.992e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

QD
type: SiteQuality
SIO_000300: 1.456e1

FS
type: SiteQuality
SIO_000300: 2.058e0

DP
type: SiteQuality
SIO_000300: 1.99527e6

VQSLOD
type: SiteQuality
SIO_000300: -1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1797
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8380
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4501
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.995499e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30469
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8379
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4497
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41887
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.351e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

DP
type: SiteQuality
SIO_000300: 1.995135e6

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 4.919e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: -3.48e-2

GenotypeDepth
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30469
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13377
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1796
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8379
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41887
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 2.211e0

DP
type: SiteQuality
SIO_000300: 1.995112e6

VQSLOD
type: SiteQuality
SIO_000300: -1.518e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

QD
type: SiteQuality
SIO_000300: 1.512e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeDepth
all individuals: 216
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30472
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8379
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13377
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1792
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4494
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e0

QD
type: SiteQuality
SIO_000300: 1.393e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.166e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 1.994594e6

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeDepth
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13378
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30472
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8379
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4494
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41891
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

QD
type: SiteQuality
SIO_000300: 1.455e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

DP
type: SiteQuality
SIO_000300: 1.99452e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

FS
type: SiteQuality
SIO_000300: 2.154e0

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.717e0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30471
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 13379
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1791
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 1.315e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.994443e6

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

GenotypeDepth
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1791
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8379
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30471
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4493
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 1.994443e6

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 1.315e0

QD
type: SiteQuality
SIO_000300: 1.337e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8378
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13382
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30471
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1789
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4490
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.879e1

DP
type: SiteQuality
SIO_000300: 1.994217e6

QD
type: SiteQuality
SIO_000300: 1.331e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8378
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13382
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30471
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1789
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4490
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

FS
type: SiteQuality
SIO_000300: 4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.879e1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

DP
type: SiteQuality
SIO_000300: 1.994217e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeDepth
all individuals: 2545
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13380
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1788
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30473
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8378
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4489
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -1.338e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

DP
type: SiteQuality
SIO_000300: 1.994081e6

QD
type: SiteQuality
SIO_000300: 1.521e1

FS
type: SiteQuality
SIO_000300: 6.54e0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13380
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8377
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30473
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1788
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4489
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

QD
type: SiteQuality
SIO_000300: 1.653e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.99404e6

FS
type: SiteQuality
SIO_000300: 1.615e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.479e0

GenotypeDepth
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 324
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8382
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13378
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1787
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2542
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4487
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 3.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
type: SiteQuality
SIO_000300: -1.689e-1

DP
type: SiteQuality
SIO_000300: 1.993755e6

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeDepth
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 387
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 531
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2537
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13347
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1784
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8383
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 923
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.049e0

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

DP
type: SiteQuality
SIO_000300: 1.991577e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.941e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

QD
type: SiteQuality
SIO_000300: 1.251e1

GenotypeDepth
all individuals: 30304
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 899
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 315
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 255
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8422
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 227
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2445
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13075
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 385
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 526
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1043
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02291325695581e-4
allele num: 9776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

DP
type: SiteQuality
SIO_000300: 1.980193e6

GenotypeDepth
all individuals: 216
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 899
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 385
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 227
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30304
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 315
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 526
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1784
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2445
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 255
bin: 6.25e1
variant carriers: 3

GenotypeDepth
all individuals: 13075
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 12
allele frequency: 1.040763226366002e-3
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505298651252408e-5
allele num: 66432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

DP
type: SiteQuality
SIO_000300: 1.980193e6

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeDepth
all individuals: 1785
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 283
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 513
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 13004
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 905
bin: 4.25e1
variant carriers: 10

GenotypeDepth
all individuals: 2422
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 8437
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 379
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.25e1
variant carriers: 5

GenotypeDepth
all individuals: 279
bin: 6.75e1
variant carriers: 3

GenotypeDepth
all individuals: 30296
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4474
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41350
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023541453428864e-4
allele num: 9770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.504434455108735e-4
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.367996144113749e-4
allele num: 66392
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 1.977607e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 8.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.957e0

GenotypeDepth
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 212
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23393
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2262
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1730
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1783
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7519
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4391
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.046901172529313e-4
allele num: 9552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8054
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.154e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

DP
type: SiteQuality
SIO_000300: 1.752328e6

VQSLOD
type: SiteQuality
SIO_000300: -2.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.165e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.109e0

GenotypeDepth
all individuals: 212
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 710
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 473
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14851
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1414
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11540
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4635
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5965
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6811
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.625963383304608e-5
allele num: 61502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.651e1

DP
type: SiteQuality
SIO_000300: 1.519628e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

GenotypeDepth
all individuals: 3792
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4194
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10452
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14206
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1783
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5575
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6097
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9813
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637089908977801e-5
allele num: 61084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.486869e6

QD
type: SiteQuality
SIO_000300: 2.339e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeDepth
all individuals: 4094
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2212
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3337
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5399
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 479
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5065
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5075
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15086
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4669
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7003
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4590
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.462528387585163e-5
allele num: 10568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.146e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.165e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

DP
type: SiteQuality
SIO_000300: 9.13456e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.468e0

QD
type: SiteQuality
SIO_000300: 1.284e1

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3553
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 480
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5683
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1379
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4365
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7277
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6992
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38976
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.241491085899514e-4
allele num: 6170
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

DP
type: SiteQuality
SIO_000300: 9.40776e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.123e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.844e1

MQ
type: SiteQuality
SIO_000300: 5.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

GenotypeDepth
all individuals: 2260
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6333
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 764
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6901
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5084
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 2
allele frequency: 3.257328990228013e-4
allele num: 6140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 4.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 9.49248e5

QD
type: SiteQuality
SIO_000300: 1.339e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6996
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 766
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3219
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1381
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15590
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2272
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2946
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6794
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4002
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20047
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39174
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.232062055591467e-4
allele num: 6188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.253e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 9.59086e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.976e1

QD
type: SiteQuality
SIO_000300: 6.43e0

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1975
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2301
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11386
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3478
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1383
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4623
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 915
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5680
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21562
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40554
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.147623544224111e-4
allele num: 6354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.464e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.5e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.184e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

DP
type: SiteQuality
SIO_000300: 1.011974e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

GenotypeDepth
all individuals: 1388
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1855
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 769
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2318
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12125
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21560
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.088326127239037e-4
allele num: 6476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4664
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.389e1

FS
type: SiteQuality
SIO_000300: 1.812e0

DP
type: SiteQuality
SIO_000300: 1.031986e6

MQ
type: SiteQuality
SIO_000300: 5.065e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.112e0

MQRankSum
type: SiteQuality
SIO_000300: -3.287e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

GenotypeDepth
all individuals: 21159
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 766
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11149
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14616
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1384
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2326
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1674
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20873
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4714
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.011141222523336e-4
allele num: 6642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.501e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 1.057827e6

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

MQ
type: SiteQuality
SIO_000300: 5.096e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 1.308e1

MQRankSum
type: SiteQuality
SIO_000300: -3.317e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2327
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 20919
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1384
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4540
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17040
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 670
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43118
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.975304968759298e-4
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

FS
type: SiteQuality
SIO_000300: 1.493e0

MQRankSum
type: SiteQuality
SIO_000300: -3.317e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

DP
type: SiteQuality
SIO_000300: 1.067914e6

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9448
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1388
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4144
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 768
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 483
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18628
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3898
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.805706031058144e-4
allele num: 5538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 1.192e1

MQ
type: SiteQuality
SIO_000300: 5.257e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.393e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.102706e6

GenotypeDepth
all individuals: 619
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1624
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1388
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2361
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 768
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18628
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.350348027842227e-4
allele num: 6896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.192e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 1.102706e6

MQRankSum
type: SiteQuality
SIO_000300: -3.393e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

MQ
type: SiteQuality
SIO_000300: 5.257e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 24576
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1390
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2398
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6382
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 483
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 766
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16105
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16589
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 26225
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11928
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.098556183301946e-3
allele num: 6372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49272
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.196797e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.599e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 483
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2808
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9212
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1395
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33905
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 891
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36979
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747396379394702e-5
allele num: 57228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.343145e6

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.741e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.087e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.359e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6721
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1406
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 885
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2590
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2363
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.368147e6

QD
type: SiteQuality
SIO_000300: 9.41e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.349e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.686e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 1401
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7852
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6908
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35029
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2349
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2623
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.394262052647145e-5
allele num: 13524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58700
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

FS
type: SiteQuality
SIO_000300: 7.408e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.65e-1

DP
type: SiteQuality
SIO_000300: 1.371495e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 7.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 85
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 973
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6987
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7640
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2274
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1402
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2612
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38422
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 491
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.659475605708596e-4
allele num: 6026
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 1.375871e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

GenotypeDepth
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35509
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1411
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2664
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 767
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 486
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.341910904655282e-5
allele num: 59846
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.011e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.59e-1

FS
type: SiteQuality
SIO_000300: 1.544e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

QD
type: SiteQuality
SIO_000300: 2.557e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.951e0

DP
type: SiteQuality
SIO_000300: 1.395482e6

GenotypeDepth
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1404
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35851
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 985
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6314
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8000
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 875
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.656726308813784e-5
allele num: 60360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

FS
type: SiteQuality
SIO_000300: 1.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.063e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.711e1

VQSLOD
type: SiteQuality
SIO_000300: -9.982e-1

DP
type: SiteQuality
SIO_000300: 1.407219e6

GenotypeDepth
all individuals: 768
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 986
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8121
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2739
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1887
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 355
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.95998941868924e-5
allele num: 60484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.40997e6

FS
type: SiteQuality
SIO_000300: 1.789e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8369
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2719
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5853
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1892
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36064
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 768
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 869
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6891
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.114399544678429e-5
allele num: 14056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.417254e6

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.228e0

FS
type: SiteQuality
SIO_000300: 4.292e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.971e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.119e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

GenotypeDepth
all individuals: 1401
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 766
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8448
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 918
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1984
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.641874363773684e-5
allele num: 60906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14046
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

FS
type: SiteQuality
SIO_000300: 1.164e0

DP
type: SiteQuality
SIO_000300: 1.41606e6

VQSLOD
type: SiteQuality
SIO_000300: -3.24e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

GenotypeDepth
all individuals: 8680
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6094
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2718
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 223
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1047
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7656
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 849
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.014427412082958e-3
allele num: 8872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.410355e6

QD
type: SiteQuality
SIO_000300: 1.057e1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

FS
type: SiteQuality
SIO_000300: 3.269e0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8693
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1251
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7133
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2639
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 219
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3907
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9803
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37041
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683445001851789e-5
allele num: 59402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13780
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.380617e6

VQSLOD
type: SiteQuality
SIO_000300: -1.053e0

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.304e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

QD
type: SiteQuality
SIO_000300: 1.474e1

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1393
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7897
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1581
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 219
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27599
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14049
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.754016698238967e-5
allele num: 57012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5856
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

QD
type: SiteQuality
SIO_000300: 1.538e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 3.297e0

VQSLOD
type: SiteQuality
SIO_000300: -7.455000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.31521e6

GenotypeDepth
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11005
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 219
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6919
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 350
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11939
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2522
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2033
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19942
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 594
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.843137254901961e-5
allele num: 12750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.223665e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.963e0

QD
type: SiteQuality
SIO_000300: 1.768e1

GenotypeDepth
all individuals: 13033
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 2273
bin: 1.75e1
variant carriers: 4

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2519
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18206
bin: 2.25e1
variant carriers: 3

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 219
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 468
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6385
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 12962
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 80
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1396
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2044
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.598752598752599e-4
allele num: 7696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5470
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.480604086467279e-4
allele num: 6754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.917619084145125e-4
allele num: 52148
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.362397820163488e-3
allele num: 734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.182553e6

QD
type: SiteQuality
SIO_000300: 1.159e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6104
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14234
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16315
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1400
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 223
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2503
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 599
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13663
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 769
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 218
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2415
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23930
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.437e-1

FS
type: SiteQuality
SIO_000300: 1.243e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

QD
type: SiteQuality
SIO_000300: 5.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

DP
type: SiteQuality
SIO_000300: 1.155907e6

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15243
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1387
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2605
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2413
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 219
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 380
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.05752849676968e-5
allele num: 48602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.073482e6

FS
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.269e0

GenotypeDepth
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1700
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1387
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2474
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2401
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 768
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 218
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11850
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47038
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.385041551246538e-4
allele num: 7220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

FS
type: SiteQuality
SIO_000300: 7.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

QD
type: SiteQuality
SIO_000300: 1.449e1

DP
type: SiteQuality
SIO_000300: 1.03695e6

GenotypeDepth
all individuals: 6534
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2599
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16752
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2333
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 218
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.830022075055188e-5
allele num: 45300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

DP
type: SiteQuality
SIO_000300: 9.91956e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

FS
type: SiteQuality
SIO_000300: 2.235e0

VQSLOD
type: SiteQuality
SIO_000300: 9.82e-1

GenotypeDepth
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1387
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 223
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3592
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3053
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3611
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 218
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7261
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3708
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.764290755116443e-4
allele num: 5668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43274
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: -2.438e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.723e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.60006e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.77e-1

GenotypeDepth
all individuals: 226
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4041
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3260
bin: 1.75e1
variant carriers: 7

GenotypeDepth
all individuals: 223
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 486
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0