14-50647251-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50647251
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 50647251
    reference: chr 14
allele count: 4072
allele frequency: 2.624387728796082e-1
allele num: 15516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl transcript: ENST00000555794
  gene symbol: SOS2
  hgvsc: ENST00000555794.1:n.83+39A>T
  variant of: http://identifiers.org/hgnc/11188
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl protein: ENSP00000216373
  ensembl transcript: ENST00000216373
  gene symbol: SOS2
  hgvsc: ENST00000216373.5:c.969+39A>T
  variant of: http://identifiers.org/hgnc/11188
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl protein: ENSP00000445328
  ensembl transcript: ENST00000543680
  gene symbol: SOS2
  hgvsc: ENST00000543680.1:c.969+39A>T
  variant of: http://identifiers.org/hgnc/11188
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 1.25e1
  variant carriers: 2326
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 7.5e0
  variant carriers: 8389
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 21374
  bin: 2.5e0
  variant carriers: 12014
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.75e1
  variant carriers: 855
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 407
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 238
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 324
genotype quality: GenotypeQuality
  all individuals: 6688
  bin: 1.25e1
  variant carriers: 4516
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 2.75e1
  variant carriers: 1296
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 12022
  bin: 2.5e0
  variant carriers: 5076
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 591
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 1.75e1
  variant carriers: 1979
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 1113
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 6.75e1
  variant carriers: 155
genotype quality: GenotypeQuality
  all individuals: 10113
  bin: 7.5e0
  variant carriers: 5527
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 795
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.25e1
  variant carriers: 1526
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 466
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 6.25e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 76
num of homozygotes: 643
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

14-50647251-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50647251
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 50647252
    reference: chr 14
allele count: 12
allele frequency: 7.733952049497294e-4
allele num: 15516
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl protein: ENSP00000445328
  ensembl transcript: ENST00000543680
  gene symbol: SOS2
  hgvsc: ENST00000543680.1:c.969+38dupT
  variant of: http://identifiers.org/hgnc/11188
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl protein: ENSP00000216373
  ensembl transcript: ENST00000216373
  gene symbol: SOS2
  hgvsc: ENST00000216373.5:c.969+38dupT
  variant of: http://identifiers.org/hgnc/11188
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl transcript: ENST00000555794
  gene symbol: SOS2
  hgvsc: ENST00000555794.1:n.83+38dupT
  variant of: http://identifiers.org/hgnc/11188
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 7.5e0
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21374
  bin: 2.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6688
  bin: 1.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 12022
  bin: 2.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10113
  bin: 7.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

14-50647251-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50647251
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 50647250
    reference: chr 14
allele count: 157
allele frequency: 1.011858726475896e-2
allele num: 15516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl transcript: ENST00000555794
  gene symbol: SOS2
  hgvsc: ENST00000555794.1:n.83+38delT
  variant of: http://identifiers.org/hgnc/11188
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl protein: ENSP00000216373
  ensembl transcript: ENST00000216373
  gene symbol: SOS2
  hgvsc: ENST00000216373.5:c.969+38delT
  variant of: http://identifiers.org/hgnc/11188
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100485
  ensembl protein: ENSP00000445328
  ensembl transcript: ENST00000543680
  gene symbol: SOS2
  hgvsc: ENST00000543680.1:c.969+38delT
  variant of: http://identifiers.org/hgnc/11188
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 7.5e0
  variant carriers: 406
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 1.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21374
  bin: 2.5e0
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 2.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 12022
  bin: 2.5e0
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6688
  bin: 1.25e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 10113
  bin: 7.5e0
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 4.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 1.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 43
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: TA
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

14-50647251-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50647251
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 50647249
    reference: chr 14
allele count: 109
allele frequency: 7.025006444960041e-3
allele num: 15516
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21374
  bin: 2.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 1.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 7.5e0
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 1.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 10113
  bin: 7.5e0
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 6688
  bin: 1.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 4.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 2.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 12022
  bin: 2.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 5.747126436781609e-3
  allele num: 174
  num of homozygotes: 0
population: African
  type: Population
  allele count: 5
  allele frequency: 3.61271676300578e-3
  allele num: 1384
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 4
  allele frequency: 7.874015748031496e-3
  allele num: 508
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 2.840909090909091e-3
  allele num: 1056
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: TAA
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

14-50647251-TAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50647251
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 50647248
    reference: chr 14
allele count: 16
allele frequency: 1.031193606599639e-3
allele num: 15516
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21374
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6688
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10113
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12022
  bin: 2.5e0
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1056
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 8
  allele frequency: 9.548818333731201e-4
  allele num: 8378
  num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 1.445086705202312e-3
  allele num: 1384
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 7.251631617113851e-4
  allele num: 2758
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
reference allele: TAAA
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

16-1716597-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716597
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716597
    reference: chr 16
allele count: 2
allele frequency: 1.670480931460167e-5
allele num: 119726
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3032T>C
  hgvsp: ENSP00000380559.2:p.Val1011Ala
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.399T>C
  hgvsp: ENSP00000399172.1:p.Val134Ala
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1428T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3032T>C
  hgvsp: ENSP00000293925.5:p.Val1011Ala
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.467T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.577T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3023T>C
  hgvsp: ENSP00000413634.3:p.Val1008Ala
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1166T>C
  hgvsp: ENSP00000262317.4:p.Val389Ala
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.499T>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val1011Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

16-1716598-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716598
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716598
    reference: chr 16
allele count: 76
allele frequency: 6.348357780079522e-4
allele num: 119716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.400G>C
  hgvsp: ENST00000415022.1:c.400G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3033G>C
  hgvsp: ENST00000293925.5:c.3033G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.500G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.578G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.468G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3033G>C
  hgvsp: ENST00000397412.3:c.3033G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1167G>C
  hgvsp: ENST00000262317.4:c.1167G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1429G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3024G>C
  hgvsp: ENST00000436138.3:c.3024G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38225
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1011Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum

16-1716598-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716598
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716598
    reference: chr 16
allele count: 1
allele frequency: 8.353102342209896e-6
allele num: 119716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.500G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1167G>T
  hgvsp: ENST00000262317.4:c.1167G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3033G>T
  hgvsp: ENST00000397412.3:c.3033G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.578G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3024G>T
  hgvsp: ENST00000436138.3:c.3024G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.400G>T
  hgvsp: ENST00000415022.1:c.400G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3033G>T
  hgvsp: ENST00000293925.5:c.3033G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.468G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1429G>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val1011Val
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

16-1716601-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716601
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716601
    reference: chr 16
allele count: 1
allele frequency: 8.361903169161301e-6
allele num: 119590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3036G>A
  hgvsp: ENST00000397412.3:c.3036G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.581G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3036G>A
  hgvsp: ENST00000293925.5:c.3036G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.403G>A
  hgvsp: ENST00000415022.1:c.403G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.471G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1432G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1170G>A
  hgvsp: ENST00000262317.4:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.503G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3027G>A
  hgvsp: ENST00000436138.3:c.3027G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: c.*1432G>A
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

16-1716604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716604
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716604
    reference: chr 16
allele count: 1
allele frequency: 8.370021929457456e-6
allele num: 119474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.503+3G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.403+3G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.471+3G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.581+3G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3036+3G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3036+3G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3027+3G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1170+3G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1432+3G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47900
  bin: 6.25e1
  variant carriers: 0
hgvs: c.*1432+3G>A
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

16-1716618-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716618
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716618
    reference: chr 16
allele count: 7
allele frequency: 5.885518261922378e-5
allele num: 118936
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1432+17G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.581+17G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.471+17G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.403+17G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1170+17G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3036+17G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3036+17G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.503+17G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3027+17G>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14035
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

16-1716620-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716620
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716620
    reference: chr 16
allele count: 1
allele frequency: 8.409721638213775e-6
allele num: 118910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3036+19G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3027+19G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.403+19G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1432+19G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1170+19G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.581+19G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.471+19G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3036+19G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.503+19G>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

16-1716636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716636
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716636
    reference: chr 16
allele count: 36
allele frequency: 3.04491245876681e-4
allele num: 118230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1432+35A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.403+35A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3027+35A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.471+35A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1170+35A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3036+35A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.503+35A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3036+35A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.581+35A>G
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29614
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11508
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

16-1716645-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716645
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716645
    reference: chr 16
allele count: 8
allele frequency: 6.803762480651801e-5
allele num: 117582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3027+44T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3036+44T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.581+44T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1432+44T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1170+44T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3036+44T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.503+44T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.471+44T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.403+44T>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29447
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9551
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4984
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-1716649-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1716649
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1716649
    reference: chr 16
allele count: 1
allele frequency: 8.539417953272305e-6
allele num: 117104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1432+48G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.503+48G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.471+48G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3027+48G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3036+48G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1170+48G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.581+48G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.403+48G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3036+48G>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

16-1717290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717290
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717290
    reference: chr 16
allele count: 2
allele frequency: 1.688704257223433e-5
allele num: 118434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-46C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-673C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-46C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-46C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-46C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-673C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-46C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-46C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-46C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7089
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18572
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

16-1717293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717293
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717293
    reference: chr 16
allele count: 1
allele frequency: 8.442380751371886e-6
allele num: 118450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-43C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-43C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-670C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-43C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-43C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-670C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-43C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-43C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-43C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18797
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-1717299-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717299
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717299
    reference: chr 16
allele count: 1
allele frequency: 8.437964088024841e-6
allele num: 118512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-37C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-37C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-37C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-664C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-37C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-37C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-37C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-37C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-664C>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-1717301-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717301
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717301
    reference: chr 16
allele count: 1
allele frequency: 8.436540343535924e-6
allele num: 118532
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-35C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-35C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-35C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-35C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-35C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-35C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-662C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-662C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-35C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34751
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-1717306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717306
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717306
    reference: chr 16
allele count: 8
allele frequency: 6.750257353561605e-5
allele num: 118514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-30C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-30C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-30C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-30C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-30C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-30C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-30C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-657C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-657C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20568
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20221
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

16-1717318-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717318
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717318
    reference: chr 16
allele count: 1
allele frequency: 8.409155888931868e-6
allele num: 118918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-18G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-645G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-18G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-645G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-18G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-18G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-18G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-18G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-18G>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-1717320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717320
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717320
    reference: chr 16
allele count: 12
allele frequency: 1.008708516862244e-4
allele num: 118964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-16C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-643C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-643C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-16C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-16C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-16C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-16C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-16C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-16C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22335
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21414
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7459
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 12
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

16-1717321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717321
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717321
    reference: chr 16
allele count: 1
allele frequency: 8.404915194405689e-6
allele num: 118978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-15G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-15G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-15G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-642G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-642G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-15G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-15G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-15G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-15G>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22464
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

16-1717321-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717321
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717321
    reference: chr 16
allele count: 4
allele frequency: 3.361966077762275e-5
allele num: 118978
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-15G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-15G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-15G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-15G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-15G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-15G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-15G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-642G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-642G>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-1717326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717326
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717326
    reference: chr 16
allele count: 1
allele frequency: 8.391796180054379e-6
allele num: 119164
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-10C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-10C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-637C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-637C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-10C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-10C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-10C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-10C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-10C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/16-1717330-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717330
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717330
    reference: chr 16
allele count: 1
allele frequency: 8.384619254439656e-6
allele num: 119266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.504-6C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3037-6C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1171-6C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1433-6C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.582-6C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3028-6C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-633C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3037-6C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-633C>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 7.75e1
  variant carriers: 0
hgvs: c.3037-6C>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

16-1717341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717341
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717341
    reference: chr 16
allele count: 9
allele frequency: 7.53465943339361e-5
allele num: 119448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3042C>T
  hgvsp: ENST00000293925.5:c.3042C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3042C>T
  hgvsp: ENST00000397412.3:c.3042C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-622C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.587C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3033C>T
  hgvsp: ENST00000436138.3:c.3033C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1438C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.509C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1176C>T
  hgvsp: ENST00000262317.4:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-622C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7461
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1014Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-1717342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717342
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717342
    reference: chr 16
allele count: 1
allele frequency: 8.369181326682624e-6
allele num: 119486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3043G>A
  hgvsp: ENSP00000293925.5:p.Asp1015Asn
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1177G>A
  hgvsp: ENSP00000262317.4:p.Asp393Asn
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3043G>A
  hgvsp: ENSP00000380559.2:p.Asp1015Asn
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1439G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.588G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.510G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-621G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3034G>A
  hgvsp: ENSP00000413634.3:p.Asp1012Asn
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-621G>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp1015Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-1717363-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717363
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717363
    reference: chr 16
allele count: 1
allele frequency: 8.357430591538938e-6
allele num: 119654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.531T>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3064T>A
  hgvsp: ENSP00000380559.2:p.Ser1022Thr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1198T>A
  hgvsp: ENSP00000262317.4:p.Ser400Thr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.609T>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-600T>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1460T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-600T>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3055T>A
  hgvsp: ENSP00000413634.3:p.Ser1019Thr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3064T>A
  hgvsp: ENSP00000293925.5:p.Ser1022Thr
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1022Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

16-1717364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717364
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717364
    reference: chr 16
allele count: 1
allele frequency: 8.357570287166115e-6
allele num: 119652
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3065C>T
  hgvsp: ENSP00000380559.2:p.Ser1022Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3056C>T
  hgvsp: ENSP00000413634.3:p.Ser1019Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3065C>T
  hgvsp: ENSP00000293925.5:p.Ser1022Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-599C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1199C>T
  hgvsp: ENSP00000262317.4:p.Ser400Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-599C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.610C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.532C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1461C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser1022Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

16-1717365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717365
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717365
    reference: chr 16
allele count: 2
allele frequency: 1.671402306535183e-5
allele num: 119660
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3066G>A
  hgvsp: ENST00000397412.3:c.3066G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.611G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3057G>A
  hgvsp: ENST00000436138.3:c.3057G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-598G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1462G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3066G>A
  hgvsp: ENST00000293925.5:c.3066G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000466562
  gene symbol: CRAMP1L
  hgvsc: ENST00000466562.1:n.533G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-598G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1200G>A
  hgvsp: ENST00000262317.4:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser1022Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

16-1717382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717382
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717382
    reference: chr 16
allele count: 1
allele frequency: 8.37058242512514e-6
allele num: 119466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-581C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3083C>T
  hgvsp: ENSP00000380559.2:p.Pro1028Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.628C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3074C>T
  hgvsp: ENSP00000413634.3:p.Pro1025Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1217C>T
  hgvsp: ENSP00000262317.4:p.Pro406Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3083C>T
  hgvsp: ENSP00000293925.5:p.Pro1028Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-581C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1479C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro1028Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-1717383-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717383
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717383
    reference: chr 16
allele count: 1
allele frequency: 8.36946150884652e-6
allele num: 119482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-580A>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3084A>C
  hgvsp: ENST00000397412.3:c.3084A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3084A>C
  hgvsp: ENST00000293925.5:c.3084A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1218A>C
  hgvsp: ENST00000262317.4:c.1218A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.629A>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1480A>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3075A>C
  hgvsp: ENST00000436138.3:c.3075A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-580A>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7612
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro1028Pro
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-1717389-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717389
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717389
    reference: chr 16
allele count: 24
allele frequency: 2.00961264716226e-4
allele num: 119426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3090A>C
  hgvsp: ENST00000293925.5:c.3090A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3090A>C
  hgvsp: ENST00000397412.3:c.3090A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1486A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.635A>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-574A>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1224A>C
  hgvsp: ENST00000262317.4:c.1224A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3081A>C
  hgvsp: ENST00000436138.3:c.3081A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-574A>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22817
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7431
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala1030Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS

16-1717391-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717391
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717391
    reference: chr 16
allele count: 1
allele frequency: 8.377173876620983e-6
allele num: 119372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-572A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1226A>T
  hgvsp: ENSP00000262317.4:p.Asp409Val
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.637A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-572A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1488A>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3092A>T
  hgvsp: ENSP00000293925.5:p.Asp1031Val
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3083A>T
  hgvsp: ENSP00000413634.3:p.Asp1028Val
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3092A>T
  hgvsp: ENSP00000380559.2:p.Asp1031Val
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp1031Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

16-1717392-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717392
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717392
    reference: chr 16
allele count: 1
allele frequency: 8.379420144126027e-6
allele num: 119340
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3093C>T
  hgvsp: ENST00000397412.3:c.3093C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3084C>T
  hgvsp: ENST00000436138.3:c.3084C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.638C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1489C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3093C>T
  hgvsp: ENST00000293925.5:c.3093C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-571C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1227C>T
  hgvsp: ENST00000262317.4:c.1227C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-571C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp1031Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

16-1717393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717393
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717393
    reference: chr 16
allele count: 1
allele frequency: 8.381527114240214e-6
allele num: 119310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-570A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3094A>G
  hgvsp: ENSP00000380559.2:p.Ser1032Gly
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3085A>G
  hgvsp: ENSP00000413634.3:p.Ser1029Gly
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3094A>G
  hgvsp: ENSP00000293925.5:p.Ser1032Gly
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1490A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.639A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1228A>G
  hgvsp: ENSP00000262317.4:p.Ser410Gly
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-570A>G
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser1032Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-1717395-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717395
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717395
    reference: chr 16
allele count: 32
allele frequency: 2.683393150638983e-4
allele num: 119252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3087T>G
  hgvsp: ENSP00000413634.3:p.Ser1029Arg
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3096T>G
  hgvsp: ENSP00000293925.5:p.Ser1032Arg
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-568T>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1230T>G
  hgvsp: ENSP00000262317.4:p.Ser410Arg
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1492T>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3096T>G
  hgvsp: ENSP00000380559.2:p.Ser1032Arg
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.641T>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-568T>G
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1032Arg
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

16-1717395-TTTCCAGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717395
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717388
    reference: chr 16
allele count: 17
allele frequency: 1.42555261127696e-4
allele num: 119252
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3098_3102+2delTCCAGGT
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1494_*1498+2delTCCAGGT
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3098_3102+2delTCCAGGT
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3089_3093+2delTCCAGGT
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1232_1236+2delTCCAGGT
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.643_649delTCCAGGT
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22218
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22772
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7396
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41796
  bin: 6.25e1
  variant carriers: 0
hgvs: c.*1494_*1498+2delTCCAGGT
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: TTTCCAGG
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

16-1717401-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717401
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717401
    reference: chr 16
allele count: 1
allele frequency: 8.416799932665601e-6
allele num: 118810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-562G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102G>C
  hgvsp: ENSP00000293925.5:p.Gln1034His
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102G>C
  hgvsp: ENSP00000380559.2:p.Gln1034His
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093G>C
  hgvsp: ENSP00000413634.3:p.Gln1031His
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.647G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236G>C
  hgvsp: ENSP00000262317.4:p.Gln412His
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-562G>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22659
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln1034His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

16-1717402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717402
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717402
    reference: chr 16
allele count: 1
allele frequency: 8.415524960447032e-6
allele num: 118828
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+1G>A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+1G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-561G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-561G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+1G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+1G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.648G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+1G>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
hgvs: c.3102+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

16-1717406-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717406
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717406
    reference: chr 16
allele count: 1
allele frequency: 8.43397881384522e-6
allele num: 118568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.652A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+5A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+5A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-557A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+5A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-557A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+5A>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+5A>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 9.75e1
  variant carriers: 1
hgvs: c.3102+5A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

16-1717410-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717410
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717410
    reference: chr 16
allele count: 2
allele frequency: 1.69434090138936e-5
allele num: 118040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-553T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.656T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-553T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+9T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+9T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+9T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+9T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+9T>C
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38523
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7033
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-1717412-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717412
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717412
    reference: chr 16
allele count: 1
allele frequency: 8.49285750683675e-6
allele num: 117746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.658C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+11C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-551C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+11C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+11C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+11C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-551C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+11C>A
  variant of: http://identifiers.org/hgnc/14122
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6842
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-1717417-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717417
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717417
    reference: chr 16
allele count: 9
allele frequency: 7.67446619823999e-5
allele num: 117272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+16G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000467286
  gene symbol: CRAMP1L
  hgvsc: ENST00000467286.1:n.663G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-546G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+16G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-546G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+16G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+16G>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+16G>T
  variant of: http://identifiers.org/hgnc/14122
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34159
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

16-1717419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717419
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717419
    reference: chr 16
allele count: 5
allele frequency: 4.267522447168072e-5
allele num: 117164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+18G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+18G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+18G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+18G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-544G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+18G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-544G>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4644
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34062
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

16-1717422-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717422
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717422
    reference: chr 16
allele count: 1
allele frequency: 8.564576909900651e-6
allele num: 116760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+21G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+21G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+21G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+21G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-541G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+21G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-541G>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

16-1717440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717440
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717440
    reference: chr 16
allele count: 1
allele frequency: 8.715964159955375e-6
allele num: 114732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-523C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+39C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+39C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+39C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+39C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-523C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+39C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

16-1717442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717442
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717442
    reference: chr 16
allele count: 1
allele frequency: 8.726612678022898e-6
allele num: 114592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-521C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+41C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+41C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+41C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+41C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+41C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-521C>T
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7046
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-1717444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717444
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717444
    reference: chr 16
allele count: 2
allele frequency: 1.747518523696351e-5
allele num: 114448
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1498+43G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-519G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3102+43G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-519G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1236+43G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3102+43G>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3093+43G>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15833
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-1717933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717933
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717933
    reference: chr 16
allele count: 1
allele frequency: 3.300765777660417e-5
allele num: 30296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-30T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1499-30T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-30T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3094-30T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3103-30T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3103-30T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1237-30T>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27516
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14482
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-1717940-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717940
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717940
    reference: chr 16
allele count: 1
allele frequency: 3.110032966349443e-5
allele num: 32154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3103-23G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3094-23G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3103-23G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1237-23G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-23G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1499-23G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-23G>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11510
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-1717941-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717941
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717941
    reference: chr 16
allele count: 1
allele frequency: 3.067108330266225e-5
allele num: 32604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-22A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3103-22A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3094-22A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1499-22A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1237-22A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3103-22A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-22A>G
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11016
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-1717946-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717946
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717946
    reference: chr 16
allele count: 2
allele frequency: 5.812939603557519e-5
allele num: 34406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-17T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3103-17T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3094-17T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1237-17T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1499-17T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3103-17T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-17T>C
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32963
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8951
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30335
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

16-1717948-CCTGTCTCCCAGCAGGGCTCAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717948
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717927
    reference: chr 16
allele count: 1
allele frequency: 2.840424927569164e-5
allele num: 35206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 33441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: CCTGTCTCCCAGCAGGGCTCAT
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

16-1717953-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717953
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717953
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 39608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3094-10C>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1237-10C>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3103-10C>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1499-10C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.472-10C>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3103-10C>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.404-10C>G
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34034
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5739
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-1717964-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717964
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717964
    reference: chr 16
allele count: 1
allele frequency: 1.770099479590753e-5
allele num: 56494
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3104G>A
  hgvsp: ENSP00000380559.2:p.Gly1035Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1500G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.405G>A
  hgvsp: ENSP00000399172.1:p.Gly136Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3104G>A
  hgvsp: ENSP00000293925.5:p.Gly1035Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3095G>A
  hgvsp: ENSP00000413634.3:p.Gly1032Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1238G>A
  hgvsp: ENSP00000262317.4:p.Gly413Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.473G>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14918
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly1035Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/16-1717970-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717970
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717970
    reference: chr 16
allele count: 1
allele frequency: 1.51336299524804e-5
allele num: 66078
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1506C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1244C>A
  hgvsp: ENSP00000262317.4:p.Ser415Tyr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3101C>A
  hgvsp: ENSP00000413634.3:p.Ser1034Tyr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.411C>A
  hgvsp: ENSP00000399172.1:p.Ser138Tyr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.479C>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3110C>A
  hgvsp: ENSP00000293925.5:p.Ser1037Tyr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3110C>A
  hgvsp: ENSP00000380559.2:p.Ser1037Tyr
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser1037Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-1717972-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717972
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717972
    reference: chr 16
allele count: 1
allele frequency: 1.444752658344891e-5
allele num: 69216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.413G>C
  hgvsp: ENSP00000399172.1:p.Val139Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1246G>C
  hgvsp: ENSP00000262317.4:p.Val416Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3112G>C
  hgvsp: ENSP00000380559.2:p.Val1038Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3112G>C
  hgvsp: ENSP00000293925.5:p.Val1038Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.481G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3103G>C
  hgvsp: ENSP00000413634.3:p.Val1035Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1508G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val1038Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-1717980-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717980
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717980
    reference: chr 16
allele count: 1
allele frequency: 1.250187528129219e-5
allele num: 79988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.489C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3120C>T
  hgvsp: ENST00000293925.5:c.3120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.421C>T
  hgvsp: ENST00000415022.1:c.421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3120C>T
  hgvsp: ENST00000397412.3:c.3120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1516C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1254C>T
  hgvsp: ENST00000262317.4:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3111C>T
  hgvsp: ENST00000436138.3:c.3111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser1040Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

16-1717981-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717981
    reference: chr 16
allele count: 1
allele frequency: 1.226091221186856e-5
allele num: 81560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3112T>A
  hgvsp: ENSP00000413634.3:p.Leu1038Ile
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.422T>A
  hgvsp: ENSP00000399172.1:p.Leu142Ile
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.490T>A
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3121T>A
  hgvsp: ENSP00000380559.2:p.Leu1041Ile
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1517T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3121T>A
  hgvsp: ENSP00000293925.5:p.Leu1041Ile
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1255T>A
  hgvsp: ENSP00000262317.4:p.Leu419Ile
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu1041Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

16-1717982-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717982
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717982
    reference: chr 16
allele count: 1
allele frequency: 1.199127035518143e-5
allele num: 83394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1256T>C
  hgvsp: ENSP00000262317.4:p.Leu419Ser
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1518T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3122T>C
  hgvsp: ENSP00000380559.2:p.Leu1041Ser
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.423T>C
  hgvsp: ENSP00000399172.1:p.Leu142Ser
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3113T>C
  hgvsp: ENSP00000413634.3:p.Leu1038Ser
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.491T>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3122T>C
  hgvsp: ENSP00000293925.5:p.Leu1041Ser
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27928
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu1041Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

16-1717989-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1717989
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1717989
    reference: chr 16
allele count: 3
allele frequency: 3.237782766361595e-5
allele num: 92656
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.430G>C
  hgvsp: ENSP00000399172.1:p.Glu144Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3120G>C
  hgvsp: ENSP00000413634.3:p.Glu1040Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1525G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3129G>C
  hgvsp: ENSP00000293925.5:p.Glu1043Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.498G>C
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1263G>C
  hgvsp: ENSP00000262317.4:p.Glu421Asp
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3129G>C
  hgvsp: ENSP00000380559.2:p.Glu1043Asp
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6413
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32233
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu1043Asp
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

16-1718000-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1718000
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1718000
    reference: chr 16
allele count: 2
allele frequency: 1.907268600637028e-5
allele num: 104862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3131C>G
  hgvsp: ENSP00000413634.3:p.Ala1044Gly
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1536C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.441C>G
  hgvsp: ENSP00000399172.1:p.Ala148Gly
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3140C>G
  hgvsp: ENSP00000380559.2:p.Ala1047Gly
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.509C>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3140C>G
  hgvsp: ENSP00000293925.5:p.Ala1047Gly
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1274C>G
  hgvsp: ENSP00000262317.4:p.Ala425Gly
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1047Gly
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

16-1718001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1718001
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1718001
    reference: chr 16
allele count: 1
allele frequency: 9.443048971651967e-6
allele num: 105898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1275C>T
  hgvsp: ENST00000262317.4:c.1275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3141C>T
  hgvsp: ENST00000293925.5:c.3141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.442C>T
  hgvsp: ENST00000415022.1:c.442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3141C>T
  hgvsp: ENST00000397412.3:c.3141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.510C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1537C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3132C>T
  hgvsp: ENST00000436138.3:c.3132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37284
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala1047Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

16-1718003-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1718003
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1718003
    reference: chr 16
allele count: 1
allele frequency: 9.309600059581441e-6
allele num: 107416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3134C>G
  hgvsp: ENSP00000413634.3:p.Pro1045Arg
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3143C>G
  hgvsp: ENSP00000380559.2:p.Pro1048Arg
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.512C>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3143C>G
  hgvsp: ENSP00000293925.5:p.Pro1048Arg
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.444C>G
  hgvsp: ENSP00000399172.1:p.Pro149Arg
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1539C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1277C>G
  hgvsp: ENSP00000262317.4:p.Pro426Arg
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8584
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro1048Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

16-1718003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1718003
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1718003
    reference: chr 16
allele count: 1
allele frequency: 9.309600059581441e-6
allele num: 107416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3134C>T
  hgvsp: ENSP00000413634.3:p.Pro1045Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3143C>T
  hgvsp: ENSP00000293925.5:p.Pro1048Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1277C>T
  hgvsp: ENSP00000262317.4:p.Pro426Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.512C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3143C>T
  hgvsp: ENSP00000380559.2:p.Pro1048Leu
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1539C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.444C>T
  hgvsp: ENSP00000399172.1:p.Pro149Leu
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37746
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1048Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

16-1718019-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1718019
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1718019
    reference: chr 16
allele count: 1
allele frequency: 8.716723906486986e-6
allele num: 114722
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3159C>G
  hgvsp: ENST00000397412.3:c.3159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.528C>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1293C>G
  hgvsp: ENST00000262317.4:c.1293C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3150C>G
  hgvsp: ENST00000436138.3:c.3150C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3159C>G
  hgvsp: ENST00000293925.5:c.3159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.460C>G
  hgvsp: ENST00000415022.1:c.460C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1555C>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu1053Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-1718023-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1718023
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1718023
    reference: chr 16
allele count: 8
allele frequency: 6.902621270427445e-5
allele num: 115898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1297A>G
  hgvsp: ENSP00000262317.4:p.Ile433Val
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.464A>G
  hgvsp: ENSP00000399172.1:p.Ile156Val
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3163A>G
  hgvsp: ENSP00000293925.5:p.Ile1055Val
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1559A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3163A>G
  hgvsp: ENSP00000380559.2:p.Ile1055Val
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.532A>G
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3154A>G
  hgvsp: ENSP00000413634.3:p.Ile1052Val
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40010
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile1055Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/16-1718026-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1718026
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1718026
    reference: chr 16
allele count: 3
allele frequency: 2.575991756826378e-5
allele num: 116460
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3166C>A
  hgvsp: ENSP00000380559.2:p.Pro1056Thr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3166C>A
  hgvsp: ENSP00000293925.5:p.Pro1056Thr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1300C>A
  hgvsp: ENSP00000262317.4:p.Pro434Thr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1562C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3157C>A
  hgvsp: ENSP00000413634.3:p.Pro1053Thr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.467C>A
  hgvsp: ENSP00000399172.1:p.Pro157Thr
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.535C>A
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10822
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro1056Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

16-1718026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1718026
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 1718026
    reference: chr 16
allele count: 6
allele frequency: 5.151983513652757e-5
allele num: 116460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000399172
  ensembl transcript: ENST00000415022
  gene symbol: CRAMP1L
  hgvsc: ENST00000415022.1:c.467C>T
  hgvsp: ENSP00000399172.1:p.Pro157Ser
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000413634
  ensembl transcript: ENST00000436138
  gene symbol: CRAMP1L
  hgvsc: ENST00000436138.3:c.3157C>T
  hgvsp: ENSP00000413634.3:p.Pro1053Ser
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007545
  ensembl transcript: ENST00000492778
  gene symbol: CRAMP1L
  hgvsc: ENST00000492778.1:n.535C>T
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000262317
  ensembl transcript: ENST00000262317
  gene symbol: CRAMP1L
  hgvsc: ENST00000262317.4:c.1300C>T
  hgvsp: ENSP00000262317.4:p.Pro434Ser
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261732
  ensembl protein: ENSP00000399780
  ensembl transcript: ENST00000454337
  gene symbol: LA16c-431H6.6
  hgvsc: ENST00000454337.1:c.*1562C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000293925
  ensembl transcript: ENST00000293925
  gene symbol: CRAMP1L
  hgvsc: ENST00000293925.5:c.3166C>T
  hgvsp: ENSP00000293925.5:p.Pro1056Ser
  variant of: http://identifiers.org/hgnc/14122
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007545
  ensembl protein: ENSP00000380559
  ensembl transcript: ENST00000397412
  gene symbol: CRAMP1L
  hgvsc: ENST00000397412.3:c.3166C>T
  hgvsp: ENSP00000380559.2:p.Pro1056Ser
  variant of: http://identifiers.org/hgnc/14122
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10822
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro1056Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C

GenotypeQuality
all individuals: 832
bin: 4.75e1
variant carriers: 371

European (Non-Finnish)
type: Population
allele count: 1826
allele frequency: 2.179517784674146e-1
allele num: 8378
num of homozygotes: 235

Other
type: Population
allele count: 48
allele frequency: 2.758620689655172e-1
allele num: 174
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 262
allele frequency: 2.082670906200318e-1
allele num: 1258
num of homozygotes: 27

Latino
type: Population
allele count: 492
allele frequency: 4.659090909090909e-1
allele num: 1056
num of homozygotes: 145

African
type: Population
allele count: 603
allele frequency: 4.356936416184971e-1
allele num: 1384
num of homozygotes: 80

East Asian
type: Population
allele count: 146
allele frequency: 2.874015748031496e-1
allele num: 508
num of homozygotes: 27

South Asian
type: Population
allele count: 695
allele frequency: 2.519941986947063e-1
allele num: 2758
num of homozygotes: 120

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 4.05288e5

FS
type: SiteQuality
SIO_000300: 1.525e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.695e-1

MQ
type: SiteQuality
SIO_000300: 5.779e1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 8.1e0

GenotypeQuality
all individuals: 238
bin: 7.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1056
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.747126436781609e-3
allele num: 174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.22543352601156e-4
allele num: 1384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.3872045834328e-4
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 2.90065264684554e-3
allele num: 2758
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.695e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 8.1e0

FS
type: SiteQuality
SIO_000300: 1.525e0

DP
type: SiteQuality
SIO_000300: 4.05288e5

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 5.779e1

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 42
allele frequency: 1.522842639593909e-2
allele num: 2758
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.747126436781609e-3
allele num: 174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 80
allele frequency: 9.548818333731201e-3
allele num: 8378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 28
allele frequency: 2.225755166931637e-2
allele num: 1258
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.167630057803468e-3
allele num: 1384
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.46969696969697e-4
allele num: 1056
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.937007874015748e-3
allele num: 508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.525e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.695e-1

QD
type: SiteQuality
SIO_000300: 8.1e0

DP
type: SiteQuality
SIO_000300: 4.05288e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.779e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 7.042253521126761e-3
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 7.251631617113851e-3
allele num: 2758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 1.351351351351351e-2
allele num: 1258
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.695e-1

MQ
type: SiteQuality
SIO_000300: 5.779e1

QD
type: SiteQuality
SIO_000300: 8.1e0

FS
type: SiteQuality
SIO_000300: 1.525e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 4.05288e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

European (Finnish)
type: Population
allele count: 3
allele frequency: 2.384737678855326e-3
allele num: 1258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.968503937007874e-3
allele num: 508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.779e1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.695e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.525e0

DP
type: SiteQuality
SIO_000300: 4.05288e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 8.1e0

GenotypeQuality
all individuals: 968
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743375174337517e-4
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.27e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.459e0

DP
type: SiteQuality
SIO_000300: 1.451304e6

GenotypeQuality
all individuals: 666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 9.75e1
variant carriers: 76

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48359
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 62
allele frequency: 9.375756109363658e-4
allele num: 66128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.139072847682119e-4
allele num: 9664
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.230125523012552e-4
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.444390124663896e-4
allele num: 16364
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 1.453766e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.159e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e-1

QD
type: SiteQuality
SIO_000300: 1.151e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 2.057e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48359
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512218727316719e-5
allele num: 66128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

FS
type: SiteQuality
SIO_000300: 2.057e0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.159e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.151e1

DP
type: SiteQuality
SIO_000300: 1.453766e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 311
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48143
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513454611496201e-5
allele num: 66074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e0

FS
type: SiteQuality
SIO_000300: 1.5883e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.485e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.81e-1

DP
type: SiteQuality
SIO_000300: 1.447819e6

QD
type: SiteQuality
SIO_000300: 1.495e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514738404677512e-5
allele num: 66018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.582e0

FS
type: SiteQuality
SIO_000300: 1.272e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

DP
type: SiteQuality
SIO_000300: 1.443225e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: -7.01e-2

QD
type: SiteQuality
SIO_000300: 1.146e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e0

GenotypeQuality
all individuals: 4690
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.065092358723106e-4
allele num: 65722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.428e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 5.781e0

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.568e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

DP
type: SiteQuality
SIO_000300: 1.408352e6

GenotypeQuality
all individuals: 44146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-5
allele num: 65700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.315e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.788e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.125e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 1.40401e6

GenotypeQuality
all individuals: 656
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 36
allele frequency: 4.207573632538569e-3
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.334927e6

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.03e0

QD
type: SiteQuality
SIO_000300: 1.476e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

GenotypeQuality
all individuals: 382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5376
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 624
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.231034376634968e-4
allele num: 64986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15856
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 1.308114e6

FS
type: SiteQuality
SIO_000300: 3.699e0

QD
type: SiteQuality
SIO_000300: 1.319e1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.267e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

GenotypeQuality
all individuals: 3098
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4628
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.366993505666624e-5
allele num: 15706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.312413e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.454e1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7296
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1437
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
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variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29289
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variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.106149957877001e-4
allele num: 9496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.589e0

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 8.76e0

FS
type: SiteQuality
SIO_000300: 6.352e0

DP
type: SiteQuality
SIO_000300: 1.530512e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.113e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

GenotypeQuality
all individuals: 2020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
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variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30779
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7340
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.784258608573436e-5
allele num: 11384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.53839e6

VQSLOD
type: SiteQuality
SIO_000300: -4.183e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.601e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.32e0

FS
type: SiteQuality
SIO_000300: 3.485e0

QD
type: SiteQuality
SIO_000300: 1.185e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

GenotypeQuality
all individuals: 574
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 9.25e1
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GenotypeQuality
all individuals: 1232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 1621
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1946
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variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33407
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.144770800049158e-5
allele num: 16274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.271e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.025e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 2.045e0

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.266e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.79e-1

DP
type: SiteQuality
SIO_000300: 1.554309e6

GenotypeQuality
all individuals: 1095
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 603
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variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
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variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529285823520416e-5
allele num: 65390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.195e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 1.758e0

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.63e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.561134e6

GenotypeQuality
all individuals: 601
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
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GenotypeQuality
all individuals: 382
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GenotypeQuality
all individuals: 741
bin: 4.25e1
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GenotypeQuality
all individuals: 777
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GenotypeQuality
all individuals: 183
bin: 7.5e0
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GenotypeQuality
all individuals: 1177
bin: 8.25e1
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GenotypeQuality
all individuals: 934
bin: 4.75e1
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GenotypeQuality
all individuals: 1361
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GenotypeQuality
all individuals: 36064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 9.75e1
variant carriers: 8

African
type: Population
allele count: 1
allele frequency: 1.0530749789385e-4
allele num: 9496
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.508771929824561e-4
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.059975520195839e-5
allele num: 65360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.228350325512836e-4
allele num: 16282
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.327e0

QD
type: SiteQuality
SIO_000300: 1.202e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

DP
type: SiteQuality
SIO_000300: 1.578303e6

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

GenotypeQuality
all individuals: 1182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 193
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 9.25e1
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GenotypeQuality
all individuals: 511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
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GenotypeQuality
all individuals: 1290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39874
bin: 6.25e1
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GenotypeQuality
all individuals: 726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.308e1

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

FS
type: SiteQuality
SIO_000300: 3.064e0

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
type: SiteQuality
SIO_000300: 1.601791e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.776e0

GenotypeQuality
all individuals: 777
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.747030048916841e-4
allele num: 11448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.371825747645033e-4
allele num: 65606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.077e0

FS
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

DP
type: SiteQuality
SIO_000300: 1.604416e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 40351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 2.685e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 1.606546e6

QD
type: SiteQuality
SIO_000300: 1.157e1

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40351
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.620545073375262e-4
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524204365321302e-5
allele num: 65608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 1.606546e6

FS
type: SiteQuality
SIO_000300: 2.685e0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

GenotypeQuality
all individuals: 1932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521329033043267e-5
allele num: 65732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.613857e6

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.67e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

FS
type: SiteQuality
SIO_000300: 3.523e0

GenotypeQuality
all individuals: 981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 778
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65784
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.043405676126878e-4
allele num: 9584
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 1.261e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.789e0

QD
type: SiteQuality
SIO_000300: 1.289e1

MQ
type: SiteQuality
SIO_000300: 5.391e1

VQSLOD
type: SiteQuality
SIO_000300: -5.773e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

DP
type: SiteQuality
SIO_000300: 1.617623e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.656577415599534e-4
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.829045238385563e-4
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.035085589413621e-5
allele num: 65896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.626317e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

FS
type: SiteQuality
SIO_000300: 8.609999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.036e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65920
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041449697979588e-4
allele num: 9602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
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VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

FS
type: SiteQuality
SIO_000300: 3.252e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e0

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

DP
type: SiteQuality
SIO_000300: 1.626934e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 106
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.037990450487856e-4
allele num: 9634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66006
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.521e1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.36e0

FS
type: SiteQuality
SIO_000300: 3.224e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

DP
type: SiteQuality
SIO_000300: 1.631318e6

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66002
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.62e-1

DP
type: SiteQuality
SIO_000300: 1.631446e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.54e-2

QD
type: SiteQuality
SIO_000300: 1.106e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 7493
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42400
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515059693351918e-5
allele num: 66004
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.533e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.631583e6

VQSLOD
type: SiteQuality
SIO_000300: -1.429e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
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variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 1162
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
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variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42023
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 1.628744e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

FS
type: SiteQuality
SIO_000300: 3.034e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.353e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.13e0

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
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variant carriers: 0

GenotypeQuality
all individuals: 162
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 772
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 1917
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variant carriers: 0

GenotypeQuality
all individuals: 42099
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variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041016031646887e-4
allele num: 9606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65916
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.186e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.233e0

FS
type: SiteQuality
SIO_000300: 3.192e0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.628572e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.048e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42140
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 170
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variant carriers: 0

GenotypeQuality
all individuals: 577
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GenotypeQuality
all individuals: 2886
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.642434360297465e-4
allele num: 65890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 1.628064e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

QD
type: SiteQuality
SIO_000300: 1.075e1

FS
type: SiteQuality
SIO_000300: 2.634e0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518418415378542e-5
allele num: 65858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.439e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

DP
type: SiteQuality
SIO_000300: 1.626329e6

MQRankSum
type: SiteQuality
SIO_000300: -7.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 2862
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7416
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
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GenotypeQuality
all individuals: 1825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-5
allele num: 65840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.009e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 1.625929e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.32e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 8.65e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 41940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519202722411279e-5
allele num: 65824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.603e0

QD
type: SiteQuality
SIO_000300: 1.268e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 1.625108e6

GenotypeQuality
all individuals: 41796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1888
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variant carriers: 0

GenotypeQuality
all individuals: 7396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 32
allele frequency: 2.787942150200383e-3
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

DP
type: SiteQuality
SIO_000300: 1.624672e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 1197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1888
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.599477155971669e-5
allele num: 65794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.583551141313818e-4
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 1.624672e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.049317943336831e-4
allele num: 9530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.98e-1

DP
type: SiteQuality
SIO_000300: 1.614292e6

VQSLOD
type: SiteQuality
SIO_000300: -4.299e-1

FS
type: SiteQuality
SIO_000300: 7.147e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.77e1

QD
type: SiteQuality
SIO_000300: 1.64e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.750437521876094e-5
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.026e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

FS
type: SiteQuality
SIO_000300: 4.554e0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: -4.427e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.614609e6

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 264
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 9.49e0

MQ
type: SiteQuality
SIO_000300: 5.861e1

VQSLOD
type: SiteQuality
SIO_000300: -1.636e0

FS
type: SiteQuality
SIO_000300: 4.794e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

DP
type: SiteQuality
SIO_000300: 1.606124e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.852e0

GenotypeQuality
all individuals: 1850
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variant carriers: 0

GenotypeQuality
all individuals: 501
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variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65200
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.241619071268935e-4
allele num: 16108
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.323e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

DP
type: SiteQuality
SIO_000300: 1.584987e6

MQRankSum
type: SiteQuality
SIO_000300: -6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 1008
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537562655678219e-5
allele num: 65038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.887e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-2

FS
type: SiteQuality
SIO_000300: 3.002e0

QD
type: SiteQuality
SIO_000300: 1.267e1

VQSLOD
type: SiteQuality
SIO_000300: -1.534e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.573583e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.088516894187411e-5
allele num: 64756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.188118811881188e-4
allele num: 11312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

DP
type: SiteQuality
SIO_000300: 1.541818e6

QD
type: SiteQuality
SIO_000300: 1.513e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

FS
type: SiteQuality
SIO_000300: 2.302e0

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1702
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.727497527200791e-5
allele num: 64704
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.852e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.442e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.532742e6

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 2.888e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2853
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.078050884001725e-4
allele num: 9276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.649e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.497468e6

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 3933
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15708
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.203369434416366e-4
allele num: 8310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.414e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.692e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.026e0

DP
type: SiteQuality
SIO_000300: 1.33238e6

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

GenotypeQuality
all individuals: 3105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63288
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11038
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.365372374283896e-5
allele num: 15710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.032e-1

DP
type: SiteQuality
SIO_000300: 1.330122e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.439e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e0

QD
type: SiteQuality
SIO_000300: 1.461e1

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.163555836760519e-5
allele num: 63220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.758e0

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.320243e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 913
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15066
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.288327750579748e-4
allele num: 7762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1036
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

DP
type: SiteQuality
SIO_000300: 5.79914e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.206554121151936e-5
allele num: 16112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3004
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.49e-2

DP
type: SiteQuality
SIO_000300: 6.20994e5

QD
type: SiteQuality
SIO_000300: 6.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.784e0

VQSLOD
type: SiteQuality
SIO_000300: -3.459e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.114e0

FS
type: SiteQuality
SIO_000300: 6.004e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

GenotypeQuality
all individuals: 2060
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1211
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 199
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 181
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GenotypeQuality
all individuals: 6849
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.311258278145695e-3
allele num: 302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.386e0

DP
type: SiteQuality
SIO_000300: 6.26682e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

QD
type: SiteQuality
SIO_000300: 2.001e1

VQSLOD
type: SiteQuality
SIO_000300: -2.335e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1348
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3152
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.362948960302458e-4
allele num: 8464
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17390
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.54161e5

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.064e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.823e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 6.67779e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 9036
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MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

DP
type: SiteQuality
SIO_000300: 7.11235e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 7.48e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 421
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GenotypeQuality
all individuals: 16348
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.840909090909091e-4
allele num: 3520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10424
num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 2.150537634408602e-4
allele num: 4650
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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QD
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 534
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South Asian
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allele frequency: 8.791981712678038e-5
allele num: 11374
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Latino
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 44988
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 2.247191011235955e-4
allele num: 4450
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 12352
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QD
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MQ
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DP
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5368
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.998720204767237e-5
allele num: 12502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45844
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.47e-1

DP
type: SiteQuality
SIO_000300: 1.063241e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.133469875405359e-5
allele num: 46872
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
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ClippingRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.455e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.07823e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.850893407270487e-5
allele num: 51936
num of homozygotes: 0

Latino
type: Population
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allele frequency: 1.2306177701206e-4
allele num: 8126
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South Asian
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East Asian
type: Population
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allele frequency: 0.0e0
allele num: 6370
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
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ClippingRankSum
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QD
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
type: Population
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East Asian
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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VQSLOD
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MQ
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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South Asian
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QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
type: Population
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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DP
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SIO_000300: 1.302161e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

GenotypeQuality
all individuals: 237
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38781
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.239464551313832e-4
allele num: 8068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59830
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.257e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.936e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

DP
type: SiteQuality
SIO_000300: 1.302161e6

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5777
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.177679882525697e-5
allele num: 10896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 2.222e0

DP
type: SiteQuality
SIO_000300: 1.382315e6

VQSLOD
type: SiteQuality
SIO_000300: 5.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.566e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42416
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5922
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.36626746506986e-4
allele num: 16032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64206
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.064539521392314e-5
allele num: 11032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.061e0

FS
type: SiteQuality
SIO_000300: 3.619e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 1.397148e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.55366027007818e-4
allele num: 8442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

DP
type: SiteQuality
SIO_000300: 1.404783e6

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.684e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.301171947665406e-5
allele num: 64508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0