12-7281324-GTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281324
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281321
    reference: chr 12
allele count: 102
allele frequency: 1.599698880210784e-3
allele num: 63762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.45_47delGAA
  hgvsp: ENSP00000438083.1:p.Lys15del
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.45_47delGAA
  hgvsp: ENSP00000445483.1:p.Lys15del
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.45_47delGAA
  hgvsp: ENSP00000266560.3:p.Lys15del
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26458
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 9.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29562
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8804
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys15del
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: GTTC
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

12-7281330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281330
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281330
    reference: chr 12
allele count: 1
allele frequency: 1.557632398753894e-5
allele num: 64200
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.42G>A
  hgvsp: ENST00000266560.3:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.42G>A
  hgvsp: ENST00000543045.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.42G>A
  hgvsp: ENST00000542370.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln14Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-7281333-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281333
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281333
    reference: chr 12
allele count: 1
allele frequency: 1.570993181889591e-5
allele num: 63654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.39G>A
  hgvsp: ENST00000543045.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.39G>A
  hgvsp: ENST00000266560.3:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.39G>A
  hgvsp: ENST00000542370.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29450
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 256
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser13Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

12-7281334-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281334
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281334
    reference: chr 12
allele count: 1
allele frequency: 1.559819060988925e-5
allele num: 64110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.38C>A
  hgvsp: ENSP00000438083.1:p.Ser13Ter
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.38C>A
  hgvsp: ENSP00000266560.3:p.Ser13Ter
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.38C>A
  hgvsp: ENSP00000445483.1:p.Ser13Ter
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8755
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser13Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

12-7281336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281336
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281336
    reference: chr 12
allele count: 9
allele frequency: 1.398384089496582e-4
allele num: 64360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.36C>T
  hgvsp: ENST00000542370.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.36C>T
  hgvsp: ENST00000543045.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.36C>T
  hgvsp: ENST00000266560.3:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26114
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8761
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Val12Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

12-7281343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281343
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281343
    reference: chr 12
allele count: 1
allele frequency: 1.576193178235924e-5
allele num: 63444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.29G>A
  hgvsp: ENSP00000438083.1:p.Arg10His
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.29G>A
  hgvsp: ENSP00000266560.3:p.Arg10His
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.29G>A
  hgvsp: ENSP00000445483.1:p.Arg10His
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8754
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg10His
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

12-7281348-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281348
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281348
    reference: chr 12
allele count: 7
allele frequency: 1.120932615936459e-4
allele num: 62448
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.24C>A
  hgvsp: ENSP00000266560.3:p.Tyr8Ter
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.24C>A
  hgvsp: ENSP00000445483.1:p.Tyr8Ter
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.24C>A
  hgvsp: ENSP00000438083.1:p.Tyr8Ter
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10064
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8649
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr8Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

12-7281360-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281360
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281360
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 61472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.12C>T
  hgvsp: ENST00000543045.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.12C>T
  hgvsp: ENST00000542370.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.12C>T
  hgvsp: ENST00000266560.3:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8752
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6497
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn4Asn
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

12-7281360-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281360
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281360
    reference: chr 12
allele count: 1
allele frequency: 1.626756897449245e-5
allele num: 61472
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.12C>A
  hgvsp: ENSP00000266560.3:p.Asn4Lys
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.12C>A
  hgvsp: ENSP00000445483.1:p.Asn4Lys
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.12C>A
  hgvsp: ENSP00000438083.1:p.Asn4Lys
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8752
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn4Lys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

12-7281370-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281370
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281370
    reference: chr 12
allele count: 1
allele frequency: 1.713032753186241e-5
allele num: 58376
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.2T>C
  hgvsp: ENSP00000266560.3:p.Met1?
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.2T>C
  hgvsp: ENSP00000438083.1:p.Met1?
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.2T>C
  hgvsp: ENSP00000445483.1:p.Met1?
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25595
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 544
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Met1?
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

12-7281375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281375
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281375
    reference: chr 12
allele count: 2
allele frequency: 3.544590954203885e-5
allele num: 56424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-4C>T
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8752
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

12-7281391-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281391
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281391
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 46586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-20C>A
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-20C>A
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-20C>A
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

12-7281393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281393
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281393
    reference: chr 12
allele count: 1
allele frequency: 2.142336861048031e-5
allele num: 46678
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-22T>C
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

12-7281402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281402
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281402
    reference: chr 12
allele count: 1
allele frequency: 2.490287877278613e-5
allele num: 40156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-31C>T
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 267
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genotype quality: GenotypeQuality
  all individuals: 8751
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

12-7281403-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281403
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281403
    reference: chr 12
allele count: 1
allele frequency: 2.481389578163772e-5
allele num: 40300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-32T>C
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-32T>C
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-32T>C
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 90
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genotype quality: GenotypeQuality
  all individuals: 4838
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/12-7281406-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281406
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281407
    reference: chr 12
allele count: 3
allele frequency: 7.574227428802263e-5
allele num: 39608
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-36dupT
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-36dupT
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-36dupT
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 267
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8490
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 273
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 66
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genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

12-7281408-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281408
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281408
    reference: chr 12
allele count: 1
allele frequency: 2.729257641921397e-5
allele num: 36640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-37C>G
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-37C>G
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-37C>G
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7235
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8749
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18534
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

12-7281410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281410
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281410
    reference: chr 12
allele count: 1
allele frequency: 2.715472763808179e-5
allele num: 36826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-39C>T
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-39C>T
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

12-7281414-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281414
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281414
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 33720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-43C>G
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-43C>G
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-43C>G
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum

12-7281422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281422
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281422
    reference: chr 12
allele count: 19
allele frequency: 5.926018339467282e-4
allele num: 32062
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-51C>T
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18064
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24592
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 273
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

12-7281422-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7281422
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7281422
    reference: chr 12
allele count: 7
allele frequency: 2.183269914540578e-4
allele num: 32062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000445483
  ensembl transcript: ENST00000543045
  gene symbol: RBP5
  hgvsc: ENST00000543045.1:c.-51C>G
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000266560
  ensembl transcript: ENST00000266560
  gene symbol: RBP5
  hgvsc: ENST00000266560.3:c.-51C>G
  variant of: http://identifiers.org/hgnc/15847
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139194
  ensembl protein: ENSP00000438083
  ensembl transcript: ENST00000542370
  gene symbol: RBP5
  hgvsc: ENST00000542370.1:c.-51C>G
  variant of: http://identifiers.org/hgnc/15847
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 24592
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7381
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8736
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8542
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8761
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-7283238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283238
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283238
    reference: chr 12
allele count: 1
allele frequency: 4.104416351994746e-5
allele num: 24364
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.-7C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-269G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+158C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22367
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

12-7283248-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283248
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283248
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 25460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-279T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.4A>G
  hgvsp: ENSP00000266546.6:p.Thr2Ala
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+168A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.4A>G
  hgvsp: ENSP00000443959.1:p.Thr2Ala
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18835
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17946
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr2Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

12-7283250-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283250
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283250
    reference: chr 12
allele count: 1
allele frequency: 3.857727027235553e-5
allele num: 25922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+170C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.6C>T
  hgvsp: ENST00000266546.6:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-281G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.6C>T
  hgvsp: ENST00000541953.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28267
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4559
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr2Thr
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-7283255-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283255
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283255
    reference: chr 12
allele count: 54
allele frequency: 2.032061413411605e-3
allele num: 26574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-286A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+175T>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.11T>A
  hgvsp: ENSP00000266546.6:p.Leu4Gln
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.11T>A
  hgvsp: ENSP00000443959.1:p.Leu4Gln
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28971
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 17345
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16753
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 26740
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4799
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Leu4Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-7283265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283265
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283265
    reference: chr 12
allele count: 1
allele frequency: 3.631082062454612e-5
allele num: 27540
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.21C>T
  hgvsp: ENST00000266546.6:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-296G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.21C>T
  hgvsp: ENST00000541953.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+185C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29533
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro7Pro
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-7283272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283272
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283272
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 27934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-303G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+192C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.28C>T
  hgvsp: ENST00000266546.6:c.28C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.28C>T
  hgvsp: ENST00000541953.1:c.28C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29182
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu10Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

12-7283279-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283279
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283279
    reference: chr 12
allele count: 4
allele frequency: 1.416330288223214e-4
allele num: 28242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.35C>G
  hgvsp: ENSP00000443959.1:p.Ser12Cys
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.35C>G
  hgvsp: ENSP00000266546.6:p.Ser12Cys
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+199C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-310G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28962
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Ser12Cys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

12-7283281-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283281
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283281
    reference: chr 12
allele count: 1
allele frequency: 3.548867911136347e-5
allele num: 28178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-312G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.37C>G
  hgvsp: ENSP00000266546.6:p.Leu13Val
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.37C>G
  hgvsp: ENSP00000443959.1:p.Leu13Val
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+201C>G
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4945
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16777
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu13Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

12-7283287-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283287
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283287
    reference: chr 12
allele count: 276
allele frequency: 9.789316875931049e-3
allele num: 28194
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.43G>T
  hgvsp: ENSP00000266546.6:p.Ala15Ser
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.43G>T
  hgvsp: ENSP00000443959.1:p.Ala15Ser
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+207G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.175-318C>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 17578
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27698
  bin: 7.5e0
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 17462
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 9.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4851
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 26066
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 6.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.75e1
  variant carriers: 9
hgvs: p.Ala15Ser
num of homozygotes: 5
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-7283303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283303
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283303
    reference: chr 12
allele count: 2
allele frequency: 7.321180174244088e-5
allele num: 27318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.59A>G
  hgvsp: ENSP00000443959.1:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.174+318T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.59A>G
  hgvsp: ENSP00000266546.6:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+223A>G
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22922
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Asn20Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-7283306-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283306
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283306
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 26890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.62A>C
  hgvsp: ENSP00000443959.1:p.Lys21Thr
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+226A>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.62A>C
  hgvsp: ENSP00000266546.6:p.Lys21Thr
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.174+315T>G
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20713
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24844
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys21Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-7283314-T-TGAGGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283314
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283320
    reference: chr 12
allele count: 1
allele frequency: 3.896508728179551e-5
allele num: 25664
alternate allele: TGAGGTG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.64+8_64+13dupAGGTGG
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.174+301_174+306dupCACCTC
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.64+8_64+13dupAGGTGG
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+236_57+241dupAGGTGG
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27892
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15701
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
hgvs: c.64+8_64+13dupAGGTGG
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

12-7283318-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283318
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283318
    reference: chr 12
allele count: 5
allele frequency: 2.07090788601723e-4
allele num: 24144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+238G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.64+10G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.174+303C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.64+10G>C
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

12-7283338-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283338
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283338
    reference: chr 12
allele count: 18
allele frequency: 8.532423208191126e-4
allele num: 21096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.64+30A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.174+283T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+258A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.64+30A>G
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33215
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33712
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

12-7283340-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283340
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283341
    reference: chr 12
allele count: 1
allele frequency: 4.878048780487805e-5
allele num: 20500
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.174+280dupC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.64+36dupG
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.64+36dupG
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+264dupG
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32836
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32850
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

12-7283344-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7283344
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7283344
    reference: chr 12
allele count: 29
allele frequency: 1.536342445433354e-3
allele num: 18876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.64+36G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.64+36G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+264G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256967
  ensembl transcript: ENST00000538062
  gene symbol: RP11-273B20.1
  hgvsc: ENST00000538062.1:n.174+277C>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 31077
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28735
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5696
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 29
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

12-7284427-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7284427
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7284427
    reference: chr 12
allele count: 1
allele frequency: 9.107468123861566e-5
allele num: 10980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+1347G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.6G>T
  hgvsp: ENST00000539982.1:c.6G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-48+647G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-48+1018G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.64+1119G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.64+1119G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-48+476G>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5099
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val2Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

12-7284435-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7284435
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7284435
    reference: chr 12
allele count: 1
allele frequency: 9.107468123861566e-5
allele num: 10980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.13+1G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-48+1026G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.64+1127G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+1355G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-48+655G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.64+1127G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-48+484G>C
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: c.13+1G>C
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-7284459-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7284459
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7284459
    reference: chr 12
allele count: 5
allele frequency: 4.55622380171314e-4
allele num: 10974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.13+25G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.64+1151G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-48+1050G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-48+508G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-48+679G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+1379G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.64+1151G>C
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-7284484-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7284484
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7284484
    reference: chr 12
allele count: 11097
allele frequency: 9.972142343637671e-1
allele num: 11128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-1136A>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-48+704A>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-48+533A>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-48+1075A>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-1136A>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.13+50A>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.57+1404A>C
  variant of: http://identifiers.org/hgnc/18371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 7.5e0
  variant carriers: 979
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.75e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 9.75e1
  variant carriers: 858
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.75e1
  variant carriers: 517
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 2.5e0
  variant carriers: 1449
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.75e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 588
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.25e1
  variant carriers: 384
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.25e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 546
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 263
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 7.5e0
  variant carriers: 879
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.25e1
  variant carriers: 562
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 6.25e1
  variant carriers: 12
num of homozygotes: 5537
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

12-7285470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285470
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285470
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 19082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-150C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-150C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-150C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-150C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-150C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-842C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-150C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21914
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8087
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4431
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

12-7285472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285472
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285472
    reference: chr 12
allele count: 3
allele frequency: 1.569530187297269e-4
allele num: 19114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-840C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-148C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-148C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-148C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-148C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-148C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-148C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21920
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18817
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

12-7285474-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285474
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285474
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 19264
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-146A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-146A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-46A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-838A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-146A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-146A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-146A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-146A>G
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22003
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7995
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19530
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-7285475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285475
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285475
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 19216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-145C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-145C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-145C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-145C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-45C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-145C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-837C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-145C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22033
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7960
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10665
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-7285476-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285476
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285475
    reference: chr 12
allele count: 1
allele frequency: 5.178663904712584e-5
allele num: 19310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-835delA
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-143delA
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-143delA
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-143delA
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-43delA
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-143delA
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-143delA
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-143delA
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22152
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11706
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: CA
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

12-7285479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285479
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285479
    reference: chr 12
allele count: 1
allele frequency: 5.110906674844117e-5
allele num: 19566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-141C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-141C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-141C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-141C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-833C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-141C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-141C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13805
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

12-7285480-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285480
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285480
    reference: chr 12
allele count: 9
allele frequency: 4.590431500561053e-4
allele num: 19606
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-140C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-140C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-140C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-140C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-832C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-140C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-40C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-140C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22939
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26074
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6986
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-7285481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285481
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285481
    reference: chr 12
allele count: 4
allele frequency: 2.001000500250125e-4
allele num: 19990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-139G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-139G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-831G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-139G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-139G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-139G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-139G>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23553
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-7285482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285482
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285482
    reference: chr 12
allele count: 1542
allele frequency: 7.272898783133666e-2
allele num: 21202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-138C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-138C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-138C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-138C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-138C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-830C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-138C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 23783
  bin: 2.5e0
  variant carriers: 386
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 1.25e1
  variant carriers: 878
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 24256
  bin: 7.5e0
  variant carriers: 2298
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 9.75e1
  variant carriers: 1843
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 5585
  bin: 1.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.75e1
  variant carriers: 263
num of homozygotes: 61
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

12-7285490-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285490
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285490
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 22632
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-130A>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-130A>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-30A>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-130A>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-130A>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-130A>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-130A>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-822A>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27603
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4335
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-7285495-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285495
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285495
    reference: chr 12
allele count: 1
allele frequency: 4.133256179217988e-5
allele num: 24194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-125G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-125G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-125G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-817G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-125G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-25G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-125G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-125G>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

12-7285499-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285499
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285499
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 25096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-121C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-121C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-21C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-121C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-121C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-813C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-121C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-121C>G
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31671
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

12-7285504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285504
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285504
    reference: chr 12
allele count: 2
allele frequency: 7.28279076542131e-5
allele num: 27462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-116G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-116G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-116G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-116G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.4G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-116G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-116G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-808G>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

12-7285505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285505
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285505
    reference: chr 12
allele count: 1
allele frequency: 3.538570417551309e-5
allele num: 28260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-15G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.5G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-115G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-115G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-115G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-115G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-115G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-807G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-115G>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34635
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

12-7285505-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285505
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285505
    reference: chr 12
allele count: 1
allele frequency: 3.538570417551309e-5
allele num: 28260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-115G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-15G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-115G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-115G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-115G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-115G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.5G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-115G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-807G>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34635
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

12-7285516-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285516
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285516
    reference: chr 12
allele count: 2
allele frequency: 5.480052608505042e-5
allele num: 36496
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-104G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-796G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-104G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.-4G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-104G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-104G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.16G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-104G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-104G>C
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

12-7285525-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285525
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285525
    reference: chr 12
allele count: 1
allele frequency: 2.256826901376664e-5
allele num: 44310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-95G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.6G>T
  hgvsp: ENST00000537408.1:c.6G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-95G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.25G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-95G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-95G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-95G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-95G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-787G>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val2Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

12-7285526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285526
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285526
    reference: chr 12
allele count: 1
allele frequency: 2.210921954455008e-5
allele num: 45230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-94C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.26C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-94C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.7C>T
  hgvsp: ENST00000537408.1:c.7C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-94C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-94C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-94C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-786C>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-94C>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu3Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-7285527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285527
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285527
    reference: chr 12
allele count: 788
allele frequency: 1.648604544123185e-2
allele num: 47798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-93T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-93T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-93T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-93T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-785T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-93T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.27T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.8T>C
  hgvsp: ENSP00000440679.1:p.Leu3Pro
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-93T>C
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 1.25e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 33658
  bin: 7.5e0
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 11486
  bin: 2.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 2.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.25e1
  variant carriers: 5
hgvs: p.Leu3Pro
num of homozygotes: 24
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-7285530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285530
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285530
    reference: chr 12
allele count: 1
allele frequency: 1.967032534718124e-5
allele num: 50838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.11G>A
  hgvsp: ENSP00000440679.1:p.Gly4Glu
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-90G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-90G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.30G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-90G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-782G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-90G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-90G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-90G>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly4Glu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-7285531-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285531
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285531
    reference: chr 12
allele count: 2
allele frequency: 3.847781753818924e-5
allele num: 51978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-89G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-781G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-89G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-89G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.31G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-89G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-89G>T
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.12G>T
  hgvsp: ENST00000537408.1:c.12G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-89G>T
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly4Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

12-7285533-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285533
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285533
    reference: chr 12
allele count: 1
allele frequency: 1.84168845998011e-5
allele num: 54298
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-87G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.14G>C
  hgvsp: ENSP00000440679.1:p.Cys5Ser
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-87G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-779G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-87G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-87G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-87G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.33G>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-87G>C
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys5Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

12-7285549-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285549
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285549
    reference: chr 12
allele count: 1
allele frequency: 1.467652929435247e-5
allele num: 68136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-71A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-71A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-71A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.49A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-71A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.30A>G
  hgvsp: ENST00000537408.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-763A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-71A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-71A>G
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser10Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

12-7285552-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285552
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285552
    reference: chr 12
allele count: 4
allele frequency: 5.673597912115968e-5
allele num: 70502
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-68A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.52A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-760A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-68A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-68A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.33A>G
  hgvsp: ENST00000537408.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-68A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-68A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-68A>G
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20861
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25473
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr11Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

12-7285553-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285553
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285553
    reference: chr 12
allele count: 2
allele frequency: 2.809541201921726e-5
allele num: 71186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-67A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-67A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-67A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.34A>G
  hgvsp: ENSP00000440679.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.53A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-67A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-67A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-67A>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-759A>G
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21059
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg12Gly
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

12-7285555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285555
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285555
    reference: chr 12
allele count: 1
allele frequency: 1.382552191345223e-5
allele num: 72330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-65G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-65G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.36G>A
  hgvsp: ENST00000537408.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-65G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.55G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-65G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-65G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-65G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-757G>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg12Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

12-7285561-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285561
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285561
    reference: chr 12
allele count: 1
allele frequency: 1.315789473684211e-5
allele num: 76000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.61T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-59T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.42T>C
  hgvsp: ENST00000537408.1:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-751T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-59T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-59T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-59T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-59T>C
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-59T>C
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val14Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

12-7285566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285566
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285566
    reference: chr 12
allele count: 177
allele frequency: 2.240960194469766e-3
allele num: 78984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.66G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-54G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-54G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.47G>A
  hgvsp: ENSP00000440679.1:p.Gly16Glu
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-54G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-54G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-746G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-54G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-54G>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20408
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 23126
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Gly16Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-7285571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285571
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285571
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 82092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-741G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-49G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-49G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-49G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-49G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-49G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.71G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.52G>A
  hgvsp: ENSP00000440679.1:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-49G>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18959
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu18Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

12-7285577-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285577
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285577
    reference: chr 12
allele count: 3
allele frequency: 3.499195185107426e-5
allele num: 85734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.77C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-43C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-43C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.58C>G
  hgvsp: ENSP00000440679.1:p.Leu20Val
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-43C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-43C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-43C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-735C>G
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-43C>G
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu20Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/12-7285584-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285584
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285584
    reference: chr 12
allele count: 1
allele frequency: 1.122485632183908e-5
allele num: 89088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-36C>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-36C>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-36C>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-36C>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.65C>A
  hgvsp: ENSP00000440679.1:p.Thr22Lys
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-728C>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.84C>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-36C>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-36C>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr22Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

12-7285587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7285587
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 7285587
    reference: chr 12
allele count: 2
allele frequency: 2.203516812833282e-5
allele num: 90764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000538933
  gene symbol: CLSTN3
  hgvsc: ENST00000538933.1:n.87G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000440679
  ensembl transcript: ENST00000537408
  gene symbol: CLSTN3
  hgvsc: ENST00000537408.1:c.68G>A
  hgvsp: ENSP00000440679.1:p.Gly23Asp
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442612
  ensembl transcript: ENST00000545663
  gene symbol: CLSTN3
  hgvsc: ENST00000545663.1:c.-47-33G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000266546
  ensembl transcript: ENST00000266546
  gene symbol: CLSTN3
  hgvsc: ENST00000266546.6:c.65-33G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000442801
  ensembl transcript: ENST00000539982
  gene symbol: CLSTN3
  hgvsc: ENST00000539982.1:c.14-33G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443490
  ensembl transcript: ENST00000534830
  gene symbol: CLSTN3
  hgvsc: ENST00000534830.1:c.-47-33G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl transcript: ENST00000541667
  gene symbol: CLSTN3
  hgvsc: ENST00000541667.1:n.58-725G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443959
  ensembl transcript: ENST00000541953
  gene symbol: CLSTN3
  hgvsc: ENST00000541953.1:c.65-33G>A
  variant of: http://identifiers.org/hgnc/18371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139182
  ensembl protein: ENSP00000443468
  ensembl transcript: ENST00000535452
  gene symbol: CLSTN3
  hgvsc: ENST00000535452.1:c.-47-33G>A
  variant of: http://identifiers.org/hgnc/18371
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16597
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly23Asp
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 8807
bin: 9.75e1
variant carriers: 104

GenotypeQuality
all individuals: 759
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 4.539264639128461e-4
allele num: 4406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.202643171806168e-3
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 99
allele frequency: 9.502783643693608e-3
allele num: 10418
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 1.445e1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

FS
type: SiteQuality
SIO_000300: 1.142e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 1.392691e6

GenotypeQuality
all individuals: 619
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8756
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.835431552682318e-5
allele num: 35268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2124
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.391702e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.295e0

QD
type: SiteQuality
SIO_000300: 1.314e1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

FS
type: SiteQuality
SIO_000300: 1.295e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.76e-1

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.858613000971929e-5
allele num: 34982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.390132e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

GenotypeQuality
all individuals: 704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.534706331045004e-5
allele num: 10488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

QD
type: SiteQuality
SIO_000300: 1.076e1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 6.614e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 1.391302e6

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 4.564125969876769e-4
allele num: 4382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.972831294740995e-4
allele num: 35482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 1.391828e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 1.173e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.815e0

GenotypeQuality
all individuals: 8638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.955416503715291e-4
allele num: 5114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34974
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3919e1

VQSLOD
type: SiteQuality
SIO_000300: -2.216e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

QD
type: SiteQuality
SIO_000300: 1.024e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e0

DP
type: SiteQuality
SIO_000300: 1.383436e6

GenotypeQuality
all individuals: 236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.296610169491525e-4
allele num: 1888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.745911656870162e-4
allele num: 34366
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e0

QD
type: SiteQuality
SIO_000300: 5.9e-1

DP
type: SiteQuality
SIO_000300: 1.378328e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.019e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.21e0

FS
type: SiteQuality
SIO_000300: 1.52552e2

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: -1.093e2

GenotypeQuality
all individuals: 1051
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33840
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.101e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

DP
type: SiteQuality
SIO_000300: 1.341925e6

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.955082742316785e-5
allele num: 33840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

DP
type: SiteQuality
SIO_000300: 1.341925e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8751
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4442
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.725923369002416e-4
allele num: 5794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 3.881e0

QD
type: SiteQuality
SIO_000300: 1.379e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.299912e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3330
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.737091425864519e-4
allele num: 4222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.274214e6

QD
type: SiteQuality
SIO_000300: 1.029e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.533e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

FS
type: SiteQuality
SIO_000300: 6.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

GenotypeQuality
all individuals: 241
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.506e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.86e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.184111e6

GenotypeQuality
all individuals: 1016
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.932054105064485e-5
allele num: 25432
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 1.181796e6

GenotypeQuality
all individuals: 588
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.219263204616067e-4
allele num: 4506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.739e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.081e0

DP
type: SiteQuality
SIO_000300: 1.137877e6

FS
type: SiteQuality
SIO_000300: 6.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

MQ
type: SiteQuality
SIO_000300: 5.809e1

GenotypeQuality
all individuals: 273
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.619791185438418e-5
allele num: 21646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.478e1

VQSLOD
type: SiteQuality
SIO_000300: -5.118e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.122e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.137028e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 3
allele frequency: 6.678539626001781e-4
allele num: 4492
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 1366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 9.689e0

QD
type: SiteQuality
SIO_000300: 1.53e1

DP
type: SiteQuality
SIO_000300: 1.131796e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.173841059602649e-5
allele num: 19328
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: -2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 4.07e0

FS
type: SiteQuality
SIO_000300: 1.1761e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.62e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.116844e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 4256
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.140859551717047e-5
allele num: 19452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1144
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.251e0

FS
type: SiteQuality
SIO_000300: 2.616e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.55e-2

QD
type: SiteQuality
SIO_000300: 3.53e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.11511e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 273
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

DP
type: SiteQuality
SIO_000300: 1.101677e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 8761
bin: 9.75e1
variant carriers: 26

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.441268316118184e-3
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 4.112808460634548e-3
allele num: 1702
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.098193e6

QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1702
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 8.407398510689407e-4
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

DP
type: SiteQuality
SIO_000300: 1.098193e6

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e0

QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.45e-2

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.28332714444857e-5
allele num: 10772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

FS
type: SiteQuality
SIO_000300: 3.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

VQSLOD
type: SiteQuality
SIO_000300: -2.423e0

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

DP
type: SiteQuality
SIO_000300: 6.46945e5

GenotypeQuality
all individuals: 1938
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

FS
type: SiteQuality
SIO_000300: 4.1045e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

DP
type: SiteQuality
SIO_000300: 6.68485e5

VQSLOD
type: SiteQuality
SIO_000300: -9.098000000000001e0

QD
type: SiteQuality
SIO_000300: 3.089e1

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.602890571231934e-5
allele num: 11624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.059e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.23e-2

DP
type: SiteQuality
SIO_000300: 6.74569e5

FS
type: SiteQuality
SIO_000300: 6.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 1202
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 9.75e1
variant carriers: 46

GenotypeQuality
all individuals: 1462
bin: 6.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3388
num of homozygotes: 0

East Asian
type: Population
allele count: 44
allele frequency: 2.660217654171705e-2
allele num: 1654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.375209380234506e-5
allele num: 11940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.626955475330926e-4
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.201680672268907e-3
allele num: 238
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

FS
type: SiteQuality
SIO_000300: 1.758e0

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

DP
type: SiteQuality
SIO_000300: 6.83706e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
all individuals: 1114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.971938775510203e-5
allele num: 12544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.93998e5

FS
type: SiteQuality
SIO_000300: 3.833e0

VQSLOD
type: SiteQuality
SIO_000300: -2.587e-1

QD
type: SiteQuality
SIO_000300: 8.470000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4983
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12788
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.02e-2

DP
type: SiteQuality
SIO_000300: 6.95314e5

QD
type: SiteQuality
SIO_000300: 6.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 538
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 3.080240258740182e-4
allele num: 12986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

QD
type: SiteQuality
SIO_000300: 6.72e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.96255e5

FS
type: SiteQuality
SIO_000300: 3.009e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.016e-1

GenotypeQuality
all individuals: 610
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.187648456057007e-4
allele num: 8420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1844
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.652e0

DP
type: SiteQuality
SIO_000300: 6.9337e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 1.637e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 5.836e1

QD
type: SiteQuality
SIO_000300: 8.6e0

GenotypeQuality
all individuals: 2025
bin: 9.75e1
variant carriers: 257

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.294820717131474e-2
allele num: 1004
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 1.031518624641834e-2
allele num: 3490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.209677419354839e-2
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 149
allele frequency: 1.759149940968123e-2
allele num: 8470
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 75
allele frequency: 5.804953560371517e-3
allele num: 12920
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

FS
type: SiteQuality
SIO_000300: 1.222e0

DP
type: SiteQuality
SIO_000300: 6.94648e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.386065378191362e-4
allele num: 8382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 6.37583e5

FS
type: SiteQuality
SIO_000300: 1.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -2.668e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

QD
type: SiteQuality
SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

GenotypeQuality
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GenotypeQuality
all individuals: 727
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 444
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.22022e5

QD
type: SiteQuality
SIO_000300: 1.274e1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.55e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.208605269518975e-4
allele num: 8274
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.59e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.95354e5

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.11396429444852e-4
allele num: 8178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1330
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.92e-2

DP
type: SiteQuality
SIO_000300: 5.66423e5

FS
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 1.331e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e-1

GenotypeQuality
all individuals: 436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 2.0e-3
allele num: 8000
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.127659574468085e-3
allele num: 470
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.10204081632653e-3
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.31e-2

DP
type: SiteQuality
SIO_000300: 4.91126e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 2.581e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4318
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variant carriers: 1

GenotypeQuality
all individuals: 1158
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.52e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

DP
type: SiteQuality
SIO_000300: 4.79223e5

GenotypeQuality
all individuals: 592
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 3.593292520628161e-3
allele num: 7514
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.73224043715847e-3
allele num: 366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2270
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.263157894736842e-3
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.44352e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.969999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeQuality
all individuals: 463
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2864
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 3.80917e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.27e-2

QD
type: SiteQuality
SIO_000300: 1.074e1

MQ
type: SiteQuality
SIO_000300: 5.866e1

MQRankSum
type: SiteQuality
SIO_000300: 2.42e0

FS
type: SiteQuality
SIO_000300: 4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.023e0

GenotypeQuality
all individuals: 3479
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.75e1
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GenotypeQuality
all individuals: 5099
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

FS
type: SiteQuality
SIO_000300: 9.507e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.498e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.17e-2

DP
type: SiteQuality
SIO_000300: 3.80771e5

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 9.73e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5099
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 6.75e1
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.661337596589396e-4
allele num: 7506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

DP
type: SiteQuality
SIO_000300: 3.80635e5

FS
type: SiteQuality
SIO_000300: 1.183e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.985e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.78e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: -9.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.79e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeQuality
all individuals: 10
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 37

GenotypeQuality
all individuals: 5334
bin: 9.75e1
variant carriers: 5331

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 16

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 81

GenotypeQuality
all individuals: 627
bin: 1.75e1
variant carriers: 626

GenotypeQuality
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bin: 9.25e1
variant carriers: 13

GenotypeQuality
all individuals: 9
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 15
bin: 8.25e1
variant carriers: 15

European (Finnish)
type: Population
allele count: 14
allele frequency: 1.0e0
allele num: 14
num of homozygotes: 7

African
type: Population
allele count: 231
allele frequency: 8.884615384615384e-1
allele num: 260
num of homozygotes: 105

Latino
type: Population
allele count: 92
allele frequency: 1.0e0
allele num: 92
num of homozygotes: 46

Other
type: Population
allele count: 120
allele frequency: 1.0e0
allele num: 120
num of homozygotes: 60

East Asian
type: Population
allele count: 158
allele frequency: 1.0e0
allele num: 158
num of homozygotes: 79

European (Non-Finnish)
type: Population
allele count: 2976
allele frequency: 9.993284083277367e-1
allele num: 2978
num of homozygotes: 1487

South Asian
type: Population
allele count: 7506
allele frequency: 1.0e0
allele num: 7506
num of homozygotes: 3753

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.129e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 4.27651e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.795e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 3.277e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

GenotypeQuality
all individuals: 506
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 3.25e1
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 731
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GenotypeQuality
all individuals: 18269
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GenotypeQuality
all individuals: 10523
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GenotypeQuality
all individuals: 8184
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GenotypeQuality
all individuals: 185
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GenotypeQuality
all individuals: 626
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GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.103e0

DP
type: SiteQuality
SIO_000300: 4.03891e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.2441e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.42e-2

QD
type: SiteQuality
SIO_000300: 1.005e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 3.25e1
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GenotypeQuality
all individuals: 630
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GenotypeQuality
all individuals: 8090
bin: 1.25e1
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GenotypeQuality
all individuals: 9442
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GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 3950
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.849660523763337e-4
allele num: 6186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.007e0

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.86e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

DP
type: SiteQuality
SIO_000300: 4.06193e5

GenotypeQuality
all individuals: 627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7969
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10758
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.29e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 4.10753e5

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.096e0

GenotypeQuality
all individuals: 661
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19512
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.626e-1

DP
type: SiteQuality
SIO_000300: 4.12184e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

QD
type: SiteQuality
SIO_000300: 1.654e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 7241
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19844
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7763
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.108401684770561e-4
allele num: 9022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 4.15568e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 2.528e1

GenotypeQuality
all individuals: 2342
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20318
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5895
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.065856129685917e-4
allele num: 1974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 4.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.477e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.06e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 4.24988e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1979
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5522
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 8.697542944118286e-4
allele num: 9198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.580278128950695e-4
allele num: 6328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

QD
type: SiteQuality
SIO_000300: 1.245e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

DP
type: SiteQuality
SIO_000300: 4.29126e5

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4753
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 6.148170919151552e-4
allele num: 6506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

FS
type: SiteQuality
SIO_000300: 1.791e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.92e-2

QD
type: SiteQuality
SIO_000300: 1.249e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 4.36774e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

GenotypeQuality
all individuals: 18369
bin: 7.5e0
variant carriers: 106

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 149

GenotypeQuality
all individuals: 3952
bin: 1.75e1
variant carriers: 156

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 83

GenotypeQuality
all individuals: 1963
bin: 2.75e1
variant carriers: 206

GenotypeQuality
all individuals: 1890
bin: 3.25e1
variant carriers: 111

GenotypeQuality
all individuals: 1030
bin: 3.75e1
variant carriers: 23

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 271

GenotypeQuality
all individuals: 14931
bin: 2.25e1
variant carriers: 175

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 166

GenotypeQuality
all individuals: 2206
bin: 6.25e1
variant carriers: 194

GenotypeQuality
all individuals: 502
bin: 6.75e1
variant carriers: 135

South Asian
type: Population
allele count: 111
allele frequency: 1.69672882910425e-2
allele num: 6542
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 134
allele frequency: 1.976401179941003e-1
allele num: 678
num of homozygotes: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 1.762977473065622e-2
allele num: 2042
num of homozygotes: 1

Other
type: Population
allele count: 10
allele frequency: 4.672897196261682e-2
allele num: 214
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 4.498269896193772e-2
allele num: 578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1225
allele frequency: 1.191866121813582e-1
allele num: 10278
num of homozygotes: 51

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 4.50294e5

QD
type: SiteQuality
SIO_000300: 1.541e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17882
bin: 7.5e0
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GenotypeQuality
all individuals: 3174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
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GenotypeQuality
all individuals: 582
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GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22381
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GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

QD
type: SiteQuality
SIO_000300: 1.401e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 4.8574e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
all individuals: 3429
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15864
bin: 7.5e0
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GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.465966813410092e-5
allele num: 11812
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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ReadPosRankSum
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QD
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MQRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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DP
type: SiteQuality
SIO_000300: 5.13312e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1208
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 12262
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.85e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.473839351510685e-4
allele num: 13570
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
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FS
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SIO_000300: 3.289e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.128599942971201e-5
allele num: 14028
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.48e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.128599942971201e-5
allele num: 14028
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 974
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

QD
type: SiteQuality
SIO_000300: 8.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 8674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.058873358746294e-4
allele num: 18888
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
type: SiteQuality
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 23594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 2.439024390243902e-3
allele num: 410
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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East Asian
type: Population
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allele frequency: 0.0e0
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QD
type: SiteQuality
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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East Asian
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African
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South Asian
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Other
type: Population
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 2
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allele num: 428
num of homozygotes: 0

European (Finnish)
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Latino
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allele frequency: 1.578137028483449e-2
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South Asian
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allele frequency: 1.258389261744966e-3
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African
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allele frequency: 1.255352277150642e-1
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East Asian
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allele count: 79
allele frequency: 2.617627567925779e-2
allele num: 3018
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European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.568313377210372e-4
allele num: 25222
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.681614019586187e-5
allele num: 27162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.327e0

DP
type: SiteQuality
SIO_000300: 7.78035e5

FS
type: SiteQuality
SIO_000300: 5.013e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

QD
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

GenotypeQuality
all individuals: 504
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.178750897343863e-5
allele num: 27860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2960
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.8593e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 2746
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.413202266366305e-5
allele num: 29298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 3.256e0

DP
type: SiteQuality
SIO_000300: 8.03815e5

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 490
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 520
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variant carriers: 0

GenotypeQuality
all individuals: 19619
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variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 545
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6744
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.092925910422771e-4
allele num: 4778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 3.245e0

MQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

DP
type: SiteQuality
SIO_000300: 9.10777e5

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
all individuals: 793
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 2014
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GenotypeQuality
all individuals: 566
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GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 2559
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GenotypeQuality
all individuals: 1371
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variant carriers: 0

GenotypeQuality
all individuals: 720
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variant carriers: 0

GenotypeQuality
all individuals: 526
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variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.021085413794864e-4
allele num: 39174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 9.30264e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.801e0

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

GenotypeQuality
all individuals: 355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 826
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variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
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variant carriers: 0

GenotypeQuality
all individuals: 25098
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 533
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variant carriers: 0

GenotypeQuality
all individuals: 405
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.436368859523126e-4
allele num: 6962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.527167045741723e-5
allele num: 39570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5038
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

VQSLOD
type: SiteQuality
SIO_000300: -1.186e0

QD
type: SiteQuality
SIO_000300: 1.643e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 9.3662e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.79e-1

MQ
type: SiteQuality
SIO_000300: 5.748e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

GenotypeQuality
all individuals: 623
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 221
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variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.931247585940518e-4
allele num: 5178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

DP
type: SiteQuality
SIO_000300: 9.44244e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.621e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 1.481e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 3.58e0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22261
bin: 6.25e1
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GenotypeQuality
all individuals: 181
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GenotypeQuality
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GenotypeQuality
all individuals: 891
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 616
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GenotypeQuality
all individuals: 130
bin: 9.25e1
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GenotypeQuality
all individuals: 587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.372872048325096e-4
allele num: 7284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.458e1

DP
type: SiteQuality
SIO_000300: 9.71698e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1200
bin: 5.25e1
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GenotypeQuality
all individuals: 21651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 322
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variant carriers: 3

GenotypeQuality
all individuals: 649
bin: 4.25e1
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GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
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variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2539
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 786
bin: 9.75e1
variant carriers: 168

GenotypeQuality
all individuals: 22709
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1032
bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 5.434044287460942e-4
allele num: 44166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

African
type: Population
allele count: 135
allele frequency: 1.789501590668081e-2
allele num: 7544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3272
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 3.029283069673511e-3
allele num: 5942
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.972e5

QD
type: SiteQuality
SIO_000300: 1.322e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 208
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 670
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3428
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.16e-1

QD
type: SiteQuality
SIO_000300: 8.0e0

DP
type: SiteQuality
SIO_000300: 1.021078e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.609e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

GenotypeQuality
all individuals: 347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24678
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12356
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.898758981058132e-4
allele num: 6124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

QD
type: SiteQuality
SIO_000300: 1.68e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.310999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

FS
type: SiteQuality
SIO_000300: 2.125e0

DP
type: SiteQuality
SIO_000300: 1.051812e6

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.239157372986369e-4
allele num: 8070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50162
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 2.726e0

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.193e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.09e-1

DP
type: SiteQuality
SIO_000300: 1.082061e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0